Wall clock time and date at job start Tue Mar 31 2020 20:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36890 * 127.04125 * 2 1 4 4 C 1.47906 * 126.52323 * 0.23758 * 3 2 1 5 5 C 1.39656 * 120.12296 * 179.72924 * 4 3 2 6 6 N 1.31947 * 119.84993 * 179.73469 * 5 4 3 7 7 C 1.32243 * 120.10566 * 0.51757 * 6 5 4 8 8 C 1.38442 * 120.25122 * 359.75495 * 7 6 5 9 9 N 1.31997 * 120.14948 * 359.97438 * 8 7 6 10 10 N 1.31473 * 106.95481 * 180.26417 * 3 2 1 11 11 N 1.28568 * 109.56619 * 359.97438 * 10 3 2 12 12 C 1.30680 * 110.01338 * 0.02562 * 11 10 3 13 13 S 1.76202 * 126.22260 * 179.97438 * 12 11 10 14 14 O 1.42100 * 104.27438 * 26.09890 * 13 12 11 15 15 O 1.42107 * 104.27545 * 153.95562 * 13 12 11 16 16 C 1.81392 * 104.44905 * 270.02562 * 13 12 11 17 17 C 1.53002 * 109.47103 * 179.97438 * 16 13 12 18 18 C 1.53005 * 109.47187 * 180.02562 * 17 16 13 19 19 C 1.50703 * 109.46883 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00210 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99624 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99965 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99599 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47103 * 90.00000 * 23 21 19 25 25 H 1.48500 * 109.46969 * 209.99581 * 23 21 19 26 26 H 1.48494 * 109.47243 * 329.99739 * 23 21 19 27 27 H 1.08993 * 109.47066 * 269.68256 * 1 2 3 28 28 H 1.08998 * 109.47186 * 29.69170 * 1 2 3 29 29 H 1.09006 * 109.46540 * 149.68623 * 1 2 3 30 30 H 1.08006 * 120.07198 * 359.97165 * 5 4 3 31 31 H 1.08004 * 119.87339 * 179.73348 * 7 6 5 32 32 H 1.08002 * 119.93067 * 179.97438 * 8 7 6 33 33 H 1.09000 * 109.47551 * 299.99959 * 16 13 12 34 34 H 1.09002 * 109.47424 * 60.00082 * 16 13 12 35 35 H 1.08998 * 109.47677 * 300.00757 * 17 16 13 36 36 H 1.09005 * 109.47029 * 60.00578 * 17 16 13 37 37 H 1.09004 * 109.46682 * 300.00226 * 18 17 16 38 38 H 1.08993 * 109.47049 * 59.99978 * 18 17 16 39 39 H 0.97006 * 119.99855 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2896 1.0927 0.0000 4 6 1.8712 2.5113 0.0049 5 6 2.8315 3.5253 0.0100 6 7 2.4521 4.7890 0.0091 7 6 1.1657 5.0955 0.0137 8 6 0.2101 4.0937 0.0144 9 7 0.5784 2.8262 0.0100 10 7 3.5244 0.6411 -0.0058 11 7 3.5127 -0.6445 -0.0088 12 6 2.2808 -1.0806 -0.0056 13 16 1.7736 -2.7680 -0.0085 14 8 2.8592 -3.4612 0.5915 15 8 0.4899 -2.7491 0.6007 16 6 1.6379 -3.1968 -1.7658 17 6 1.1993 -4.6563 -1.9022 18 6 1.0854 -5.0182 -3.3845 19 6 0.6529 -6.4555 -3.5188 20 1 0.4772 -7.0514 -2.6354 21 6 0.4824 -7.0101 -4.7696 22 7 0.6968 -6.2846 -5.8453 23 14 -0.0530 -8.7919 -4.9361 24 1 -1.5359 -8.8615 -4.9759 25 1 0.5030 -9.3608 -6.1900 26 1 0.4480 -9.5699 -3.7747 27 1 -0.3633 -0.0057 1.0276 28 1 -0.3633 0.8927 -0.5090 29 1 -0.3633 -0.8872 -0.5187 30 1 3.8822 3.2755 0.0108 31 1 0.8594 6.1312 0.0173 32 1 -0.8391 4.3499 0.0186 33 1 0.9012 -2.5497 -2.2419 34 1 2.6058 -3.0620 -2.2486 35 1 1.9362 -5.3032 -1.4262 36 1 0.2314 -4.7915 -1.4195 37 1 0.3487 -4.3713 -3.8608 38 1 2.0534 -4.8831 -3.8669 39 1 0.5765 -6.6747 -6.7253 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320978432.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:41 Heat of formation + Delta-G solvation = 30.587893 kcal Electronic energy + Delta-G solvation = -25864.007109 eV Core-core repulsion = 21934.947720 eV Total energy + Delta-G solvation = -3929.059389 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.56193 -42.10066 -38.58264 -37.37011 -36.58860 -36.51100 -35.47814 -34.19393 -34.06481 -31.28807 -29.73590 -28.94817 -26.38967 -25.98664 -25.67087 -24.34356 -22.95504 -22.29017 -20.47358 -19.25404 -18.74522 -18.63990 -18.21645 -18.09686 -17.68715 -17.43681 -17.03665 -16.98513 -16.45875 -15.89502 -15.84942 -15.39105 -14.67167 -14.50421 -14.42330 -14.13380 -13.96052 -13.62916 -13.51622 -13.43485 -13.28142 -13.08530 -12.93816 -12.75823 -12.72384 -12.67220 -12.64254 -12.22229 -12.12952 -11.74103 -11.71157 -11.65645 -11.35868 -11.08507 -10.54670 -10.37453 -10.16761 -8.20351 -6.30598 -1.42203 -0.98092 -0.13934 0.15218 0.89816 1.17821 1.42651 1.43336 1.44159 1.55010 2.17733 2.41278 2.49028 2.54647 2.72123 2.98226 3.14245 3.19799 3.30823 3.43346 3.60528 3.68031 3.84364 4.01628 4.13510 4.15956 4.26665 4.34274 4.47237 4.54578 4.60390 4.64282 4.85358 5.06504 5.09826 5.22474 5.49308 5.65124 5.82215 5.97143 6.21236 6.49058 6.85682 6.86761 7.38838 8.91105 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020339 B = 0.002402 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.327841 B =11653.253625 C =12163.514375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.399 5.399 3 C 0.248 3.752 4 C 0.113 3.887 5 C 0.102 3.898 6 N -0.452 5.452 7 C 0.083 3.917 8 C 0.072 3.928 9 N -0.441 5.441 10 N -0.286 5.286 11 N -0.217 5.217 12 C -0.354 4.354 13 S 2.532 3.468 14 O -0.933 6.933 15 O -0.927 6.927 16 C -0.568 4.568 17 C -0.107 4.107 18 C 0.029 3.971 19 C -0.548 4.548 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.931 5.931 23 Si 0.961 3.039 24 H -0.271 1.271 25 H -0.284 1.284 26 H -0.264 1.264 27 H 0.109 0.891 28 H 0.135 0.865 29 H 0.113 0.887 30 H 0.181 0.819 31 H 0.222 0.778 32 H 0.226 0.774 33 H 0.161 0.839 34 H 0.151 0.849 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.009 0.991 38 H 0.003 0.997 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.874 25.155 12.094 28.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.085 5.085 3 C -0.019 4.019 4 C -0.025 4.025 5 C -0.058 4.058 6 N -0.166 5.166 7 C -0.079 4.079 8 C -0.091 4.091 9 N -0.158 5.158 10 N -0.134 5.134 11 N -0.064 5.064 12 C -0.696 4.696 13 S 2.705 3.295 14 O -0.930 6.930 15 O -0.924 6.924 16 C -0.702 4.702 17 C -0.147 4.147 18 C -0.009 4.009 19 C -0.586 4.586 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.571 5.571 23 Si 0.786 3.214 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.188 1.188 27 H 0.128 0.872 28 H 0.153 0.847 29 H 0.131 0.869 30 H 0.198 0.802 31 H 0.239 0.761 32 H 0.243 0.757 33 H 0.179 0.821 34 H 0.169 0.831 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.028 0.972 38 H 0.021 0.979 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.556 24.678 12.719 27.990 hybrid contribution -0.988 -0.447 -0.945 1.438 sum -4.544 24.232 11.774 27.321 Atomic orbital electron populations 1.23137 0.70732 1.08260 1.07533 1.46336 1.11031 1.03379 1.47741 1.23060 0.86821 0.89389 1.02584 1.18853 0.92030 0.87729 1.03933 1.23790 1.01683 0.87546 0.92800 1.68711 1.20145 1.18425 1.09347 1.24880 0.87917 1.04332 0.90758 1.24633 1.04530 0.86253 0.93721 1.68231 1.15205 1.23464 1.08860 1.74480 1.17089 1.02781 1.19003 1.74234 1.16971 1.03563 1.11629 1.38434 0.94626 1.17504 1.19077 1.05495 0.73922 0.70535 0.79506 1.93576 1.55431 1.68750 1.75212 1.93563 1.39611 1.84400 1.74784 1.30142 1.13753 1.07584 1.18734 1.21457 1.02292 0.89803 1.01104 1.18990 0.96166 0.95441 0.90332 1.21736 1.45917 0.98163 0.92762 0.91674 1.25914 0.95465 1.02534 0.95695 1.70071 1.50337 1.38399 0.98309 0.85503 0.78678 0.79514 0.77733 1.19646 1.21009 1.18819 0.87217 0.84677 0.86896 0.80162 0.76143 0.75747 0.82136 0.83071 0.90733 0.89725 0.97234 0.97885 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.70 127.77 1.24 1.97 16 2 N -0.40 -9.79 3.18 -540.26 -1.72 -11.51 16 3 C 0.25 6.30 7.82 136.39 1.07 7.37 16 4 C 0.11 2.15 6.75 41.86 0.28 2.43 16 5 C 0.10 1.74 10.88 85.02 0.93 2.66 16 6 N -0.45 -6.25 10.49 -194.19 -2.04 -8.29 16 7 C 0.08 0.48 11.22 84.68 0.95 1.43 16 8 C 0.07 0.40 11.22 84.72 0.95 1.35 16 9 N -0.44 -6.09 7.98 -184.45 -1.47 -7.56 16 10 N -0.29 -8.78 11.92 -51.05 -0.61 -9.38 16 11 N -0.22 -7.28 12.19 -57.87 -0.71 -7.99 16 12 C -0.35 -10.31 7.67 180.10 1.38 -8.93 16 13 S 2.53 72.62 5.16 -56.49 -0.29 72.33 16 14 O -0.93 -33.36 17.94 -127.65 -2.29 -35.65 16 15 O -0.93 -26.65 15.80 -127.65 -2.02 -28.67 16 16 C -0.57 -15.82 5.98 71.98 0.43 -15.39 16 17 C -0.11 -3.92 5.16 30.60 0.16 -3.76 16 18 C 0.03 1.42 4.97 29.85 0.15 1.57 16 19 C -0.55 -29.69 9.11 25.60 0.23 -29.46 16 20 H 0.07 3.36 7.74 -2.91 -0.02 3.34 16 21 C 0.00 0.11 5.46 84.66 0.46 0.58 16 22 N -0.93 -54.63 13.29 21.45 0.28 -54.35 16 23 Si 0.96 43.01 29.54 68.60 2.03 45.04 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 26 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 27 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.14 1.76 6.26 -2.39 -0.01 1.74 16 29 H 0.11 1.71 6.89 -2.38 -0.02 1.70 16 30 H 0.18 3.05 7.87 -2.91 -0.02 3.03 16 31 H 0.22 -0.72 8.06 -2.91 -0.02 -0.74 16 32 H 0.23 -0.83 8.06 -2.91 -0.02 -0.85 16 33 H 0.16 3.54 8.14 -2.39 -0.02 3.52 16 34 H 0.15 3.98 8.14 -2.39 -0.02 3.96 16 35 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.08 2.84 8.14 -2.38 -0.02 2.82 16 37 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 38 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.26 14.60 8.31 -92.70 -0.77 13.83 16 Total: -1.00 -80.97 354.93 0.49 -80.49 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: 1.09 Total: 3.73 kcal Atomic # 6 Polarization: -46.40 SS G_CDS: 8.23 Total: -38.17 kcal Atomic # 7 Polarization: -92.83 SS G_CDS: -6.26 Total: -99.08 kcal Atomic # 8 Polarization: -60.02 SS G_CDS: -4.31 Total: -64.33 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 72.62 SS G_CDS: -0.29 Total: 72.33 kcal Total: -80.97 0.49 -80.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320978432.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.076 kcal (2) G-P(sol) polarization free energy of solvation -80.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds