Wall clock time and date at job start Tue Mar 31 2020 19:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99873 * 2 1 4 4 H 1.48504 * 109.47355 * 90.00363 * 3 2 1 5 5 H 1.48503 * 109.47320 * 209.99752 * 3 2 1 6 6 H 1.48498 * 109.47676 * 330.00062 * 3 2 1 7 7 C 1.38808 * 119.99924 * 180.27607 * 2 1 3 8 8 H 1.08000 * 119.99884 * 359.72570 * 7 2 1 9 9 N 1.36937 * 120.00117 * 179.72677 * 7 2 1 10 10 C 1.46497 * 119.99885 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.47542 * 324.99420 * 10 9 7 12 12 C 1.52997 * 109.47111 * 85.00269 * 10 9 7 13 13 O 1.42898 * 109.47531 * 64.99620 * 12 10 9 14 14 C 1.53004 * 109.47191 * 204.99663 * 10 9 7 15 15 N 1.46510 * 109.46798 * 54.99770 * 14 10 9 16 16 C 1.34769 * 119.99720 * 179.97438 * 15 14 10 17 17 O 1.21752 * 120.00282 * 0.02562 * 16 15 14 18 18 C 1.46212 * 119.99879 * 180.02562 * 16 15 14 19 19 S 1.75816 * 125.47750 * 354.59096 * 18 16 15 20 20 C 1.70564 * 91.67509 * 180.02562 * 19 18 16 21 21 C 1.33592 * 111.16786 * 359.97438 * 20 19 18 22 22 C 1.37333 * 125.48003 * 174.29121 * 18 16 15 23 23 N 1.39965 * 123.47890 * 359.97438 * 22 18 16 24 24 C 1.36161 * 125.93950 * 131.02737 * 23 22 18 25 25 C 1.35362 * 106.04526 * 179.97438 * 24 23 22 26 26 N 1.33795 * 106.53790 * 0.02562 * 25 24 23 27 27 N 1.28602 * 109.06674 * 359.73311 * 26 25 24 28 28 H 0.96994 * 119.99753 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99636 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47135 * 185.00091 * 12 10 9 31 31 H 1.09000 * 109.46999 * 304.99412 * 12 10 9 32 32 H 0.96706 * 114.00051 * 179.97438 * 13 12 10 33 33 H 1.08992 * 109.47179 * 175.00077 * 14 10 9 34 34 H 1.08998 * 109.47011 * 295.00664 * 14 10 9 35 35 H 0.96996 * 119.99975 * 0.02562 * 15 14 10 36 36 H 1.08000 * 124.42119 * 179.97438 * 20 19 18 37 37 H 1.08000 * 122.45929 * 180.02562 * 21 20 19 38 38 H 1.07996 * 126.97960 * 0.02562 * 24 23 22 39 39 H 1.07999 * 126.73405 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4477 2.6527 -0.7000 7 6 2.0103 -1.2021 -0.0058 8 1 1.4703 -2.1374 -0.0058 9 7 3.3796 -1.2021 -0.0114 10 6 4.1121 -2.4709 -0.0170 11 1 3.5672 -3.2075 0.5733 12 6 4.2523 -2.9725 -1.4556 13 8 5.0654 -2.0633 -2.2000 14 6 5.5018 -2.2601 0.5873 15 7 5.3698 -1.6675 1.9206 16 6 6.4707 -1.3918 2.6475 17 8 7.5750 -1.6348 2.1959 18 6 6.3390 -0.8010 3.9784 19 16 4.8334 -0.2693 4.7143 20 6 5.6427 0.2251 6.1320 21 6 6.9561 -0.0019 6.0418 22 6 7.3706 -0.5774 4.8569 23 7 8.7047 -0.8960 4.5784 24 6 9.7749 -0.0707 4.7443 25 6 10.8594 -0.7816 4.3558 26 7 10.4110 -1.9840 3.9773 27 7 9.1341 -2.0220 4.1257 28 1 -0.4849 0.8400 -0.0004 29 1 3.8646 -0.3620 -0.0118 30 1 4.7180 -3.9580 -1.4530 31 1 3.2661 -3.0380 -1.9152 32 1 5.1976 -2.3193 -3.1232 33 1 6.0135 -3.2193 0.6649 34 1 6.0783 -1.5914 -0.0520 35 1 4.4901 -1.4743 2.2806 36 1 5.1568 0.6644 6.9907 37 1 7.6427 0.2424 6.8388 38 1 9.7614 0.9446 5.1121 39 1 11.8852 -0.4440 4.3512 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331738350.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:45 Heat of formation + Delta-G solvation = 86.380034 kcal Electronic energy + Delta-G solvation = -26639.434632 eV Core-core repulsion = 22712.794572 eV Total energy + Delta-G solvation = -3926.640060 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.33450 -39.78288 -38.32908 -37.20376 -35.07266 -33.74433 -33.56848 -31.69333 -31.10977 -30.14840 -28.80653 -26.34092 -24.93619 -23.37191 -22.97417 -22.35033 -21.39274 -20.29926 -19.88258 -18.85054 -17.86621 -17.40568 -16.91629 -16.29246 -15.79252 -15.66170 -15.33041 -15.04157 -14.90652 -14.61049 -14.23151 -14.13225 -13.67386 -13.56961 -13.31748 -13.11542 -12.88057 -12.82321 -12.42237 -11.66309 -11.63273 -11.43792 -11.07982 -11.05841 -10.93848 -10.77006 -10.65372 -10.18710 -9.99794 -9.70956 -9.49796 -9.39928 -9.29744 -9.07477 -8.88489 -8.81082 -7.42029 -5.89245 -3.25995 -0.05760 0.88525 1.28711 1.43882 2.02385 2.37915 2.62901 3.12883 3.18863 3.27805 3.37865 3.39336 4.29653 4.49121 4.54838 4.55901 4.77304 4.81535 4.92328 5.11944 5.14663 5.16880 5.29138 5.38770 5.40655 5.45385 5.73503 5.77563 5.86860 5.88916 6.09537 6.15691 6.33134 6.54528 6.63516 6.64919 7.60123 7.84210 8.08380 8.25459 8.29690 8.52270 9.07107 9.79713 9.99777 11.28336 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012713 B = 0.003969 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.922661 B = 7053.112018 C = 8493.738571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.013 3.987 3 Si 0.875 3.125 4 H -0.282 1.282 5 H -0.274 1.274 6 H -0.290 1.290 7 C -0.251 4.251 8 H 0.092 0.908 9 N -0.740 5.740 10 C 0.171 3.829 11 H 0.076 0.924 12 C 0.060 3.940 13 O -0.565 6.565 14 C 0.117 3.883 15 N -0.710 5.710 16 C 0.576 3.424 17 O -0.509 6.509 18 C -0.245 4.245 19 S 0.305 5.695 20 C -0.230 4.230 21 C -0.142 4.142 22 C 0.160 3.840 23 N -0.229 5.229 24 C -0.052 4.052 25 C -0.048 4.048 26 N -0.272 5.272 27 N -0.027 5.027 28 H 0.261 0.739 29 H 0.365 0.635 30 H 0.032 0.968 31 H 0.055 0.945 32 H 0.367 0.633 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.405 0.595 36 H 0.183 0.817 37 H 0.155 0.845 38 H 0.189 0.811 39 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.497 0.620 12.651 18.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.184 4.184 3 Si 0.705 3.295 4 H -0.209 1.209 5 H -0.199 1.199 6 H -0.216 1.216 7 C -0.381 4.381 8 H 0.110 0.890 9 N -0.383 5.383 10 C 0.060 3.940 11 H 0.094 0.906 12 C -0.021 4.021 13 O -0.369 6.369 14 C -0.006 4.006 15 N -0.362 5.362 16 C 0.360 3.640 17 O -0.386 6.386 18 C -0.369 4.369 19 S 0.572 5.428 20 C -0.369 4.369 21 C -0.174 4.174 22 C 0.052 3.948 23 N -0.019 5.019 24 C -0.200 4.200 25 C -0.203 4.203 26 N -0.140 5.140 27 N -0.006 5.006 28 H 0.071 0.929 29 H 0.199 0.801 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.212 0.788 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.241 0.759 36 H 0.201 0.799 37 H 0.172 0.828 38 H 0.206 0.794 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 12.142 -0.704 11.972 17.066 hybrid contribution 1.706 2.334 0.430 2.923 sum 13.847 1.631 12.402 18.661 Atomic orbital electron populations 1.69695 1.05082 1.25977 1.56871 1.24620 0.95118 0.97077 1.01585 0.86689 0.79718 0.85165 0.77965 1.20893 1.19945 1.21627 1.19056 0.80358 0.94765 1.43879 0.89040 1.42768 1.03944 1.01785 1.89782 1.20591 0.90285 0.90654 0.92441 0.90572 1.22973 0.93980 0.90462 0.94728 1.86521 1.72535 1.51981 1.25844 1.21677 0.98656 0.98696 0.81615 1.45872 1.08460 1.63439 1.18435 1.16678 0.85374 0.79138 0.82817 1.90930 1.25163 1.52077 1.70417 1.24981 0.98388 1.12784 1.00727 1.83846 1.03784 1.51014 1.04106 1.25189 0.98209 1.07942 1.05552 1.19566 0.96455 1.04330 0.97005 1.16611 0.80662 1.03405 0.94085 1.44021 1.05123 1.10432 1.42280 1.23807 0.86087 1.00098 1.10032 1.23564 1.00367 0.91835 1.04571 1.75138 1.01382 1.19855 1.17595 1.78603 1.05823 1.04170 1.12023 0.92937 0.80123 0.94981 0.92674 0.78800 0.91110 0.90316 0.75870 0.79924 0.82778 0.79401 0.79220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.56 13.97 55.49 0.78 -26.79 16 2 C 0.01 0.35 5.50 -17.43 -0.10 0.25 16 3 Si 0.87 21.15 27.74 -169.99 -4.72 16.43 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.27 -6.56 6.51 56.52 0.37 -6.19 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.25 -6.50 10.41 -15.06 -0.16 -6.65 16 8 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 9 N -0.74 -16.22 4.31 -53.43 -0.23 -16.45 16 10 C 0.17 3.06 2.84 -67.93 -0.19 2.87 16 11 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 12 C 0.06 0.98 6.85 37.16 0.25 1.24 16 13 O -0.57 -9.50 12.64 -35.23 -0.45 -9.95 16 14 C 0.12 2.00 5.12 -4.03 -0.02 1.98 16 15 N -0.71 -11.77 5.38 -61.76 -0.33 -12.10 16 16 C 0.58 9.96 7.74 -13.06 -0.10 9.85 16 17 O -0.51 -10.41 14.17 5.14 0.07 -10.34 16 18 C -0.24 -3.46 6.46 -36.71 -0.24 -3.70 16 19 S 0.30 3.22 22.15 -107.50 -2.38 0.84 16 20 C -0.23 -1.80 10.90 29.11 0.32 -1.49 16 21 C -0.14 -1.28 9.95 -41.26 -0.41 -1.69 16 22 C 0.16 2.08 6.21 -84.53 -0.52 1.56 16 23 N -0.23 -3.34 3.05 -11.06 -0.03 -3.38 16 24 C -0.05 -0.59 11.45 -16.66 -0.19 -0.78 16 25 C -0.05 -0.59 12.05 -17.72 -0.21 -0.80 16 26 N -0.27 -4.53 12.40 30.24 0.37 -4.16 16 27 N -0.03 -0.47 10.79 60.35 0.65 0.18 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.37 8.35 5.65 -40.82 -0.23 8.12 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.37 4.40 9.12 45.56 0.42 4.82 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.08 1.50 7.39 -51.93 -0.38 1.11 16 35 H 0.41 6.48 7.26 -40.82 -0.30 6.18 16 36 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.19 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.19 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 353.33 15.07 5.32 5.32 Total: -1.00 -36.43 353.33 -5.98 -42.41 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -3.47 Total: 15.36 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -1.57 Total: 2.64 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: 1.20 Total: -62.70 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.37 Total: -20.29 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.72 Total: 16.43 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -2.38 Total: 0.84 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.43 -5.98 -42.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331738350.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.788 kcal (2) G-P(sol) polarization free energy of solvation -36.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds