Wall clock time and date at job start Tue Mar 31 2020 19:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99873 * 2 1 4 4 H 1.48504 * 109.47355 * 90.00363 * 3 2 1 5 5 H 1.48503 * 109.47320 * 209.99752 * 3 2 1 6 6 H 1.48498 * 109.47676 * 330.00062 * 3 2 1 7 7 C 1.38808 * 119.99924 * 180.27607 * 2 1 3 8 8 H 1.08000 * 119.99884 * 359.72570 * 7 2 1 9 9 N 1.36937 * 120.00117 * 179.72677 * 7 2 1 10 10 C 1.46497 * 119.99885 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.47542 * 324.99420 * 10 9 7 12 12 C 1.52997 * 109.47111 * 85.00269 * 10 9 7 13 13 O 1.42898 * 109.47531 * 64.99620 * 12 10 9 14 14 C 1.53004 * 109.47191 * 204.99663 * 10 9 7 15 15 N 1.46510 * 109.46798 * 54.99770 * 14 10 9 16 16 C 1.34769 * 119.99720 * 179.97438 * 15 14 10 17 17 O 1.21752 * 120.00282 * 0.02562 * 16 15 14 18 18 C 1.46212 * 119.99879 * 180.02562 * 16 15 14 19 19 S 1.75816 * 125.47750 * 354.59096 * 18 16 15 20 20 C 1.70564 * 91.67509 * 180.02562 * 19 18 16 21 21 C 1.33592 * 111.16786 * 359.97438 * 20 19 18 22 22 C 1.37333 * 125.48003 * 174.29121 * 18 16 15 23 23 N 1.39965 * 123.47890 * 359.97438 * 22 18 16 24 24 C 1.36161 * 125.93950 * 131.02737 * 23 22 18 25 25 C 1.35362 * 106.04526 * 179.97438 * 24 23 22 26 26 N 1.33795 * 106.53790 * 0.02562 * 25 24 23 27 27 N 1.28602 * 109.06674 * 359.73311 * 26 25 24 28 28 H 0.96994 * 119.99753 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99636 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47135 * 185.00091 * 12 10 9 31 31 H 1.09000 * 109.46999 * 304.99412 * 12 10 9 32 32 H 0.96706 * 114.00051 * 179.97438 * 13 12 10 33 33 H 1.08992 * 109.47179 * 175.00077 * 14 10 9 34 34 H 1.08998 * 109.47011 * 295.00664 * 14 10 9 35 35 H 0.96996 * 119.99975 * 0.02562 * 15 14 10 36 36 H 1.08000 * 124.42119 * 179.97438 * 20 19 18 37 37 H 1.08000 * 122.45929 * 180.02562 * 21 20 19 38 38 H 1.07996 * 126.97960 * 0.02562 * 24 23 22 39 39 H 1.07999 * 126.73405 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4477 2.6527 -0.7000 7 6 2.0103 -1.2021 -0.0058 8 1 1.4703 -2.1374 -0.0058 9 7 3.3796 -1.2021 -0.0114 10 6 4.1121 -2.4709 -0.0170 11 1 3.5672 -3.2075 0.5733 12 6 4.2523 -2.9725 -1.4556 13 8 5.0654 -2.0633 -2.2000 14 6 5.5018 -2.2601 0.5873 15 7 5.3698 -1.6675 1.9206 16 6 6.4707 -1.3918 2.6475 17 8 7.5750 -1.6348 2.1959 18 6 6.3390 -0.8010 3.9784 19 16 4.8334 -0.2693 4.7143 20 6 5.6427 0.2251 6.1320 21 6 6.9561 -0.0019 6.0418 22 6 7.3706 -0.5774 4.8569 23 7 8.7047 -0.8960 4.5784 24 6 9.7749 -0.0707 4.7443 25 6 10.8594 -0.7816 4.3558 26 7 10.4110 -1.9840 3.9773 27 7 9.1341 -2.0220 4.1257 28 1 -0.4849 0.8400 -0.0004 29 1 3.8646 -0.3620 -0.0118 30 1 4.7180 -3.9580 -1.4530 31 1 3.2661 -3.0380 -1.9152 32 1 5.1976 -2.3193 -3.1232 33 1 6.0135 -3.2193 0.6649 34 1 6.0783 -1.5914 -0.0520 35 1 4.4901 -1.4743 2.2806 36 1 5.1568 0.6644 6.9907 37 1 7.6427 0.2424 6.8388 38 1 9.7614 0.9446 5.1121 39 1 11.8852 -0.4440 4.3512 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331738350.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:44 Heat of formation + Delta-G solvation = 55.721991 kcal Electronic energy + Delta-G solvation = -26640.764065 eV Core-core repulsion = 22712.794572 eV Total energy + Delta-G solvation = -3927.969493 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.32329 -41.00130 -39.34203 -38.58311 -36.50864 -35.34048 -34.57432 -33.49020 -32.08127 -31.36818 -30.24604 -27.43275 -26.10873 -25.27112 -23.86564 -23.32800 -22.50120 -21.80258 -20.84231 -20.19841 -19.47540 -18.48077 -18.28164 -17.37313 -17.10882 -16.76395 -16.59624 -16.28812 -16.00880 -15.77422 -15.51920 -15.09263 -15.01793 -14.87470 -14.64919 -14.53204 -14.37825 -14.03294 -13.67375 -13.21289 -12.86009 -12.67558 -12.63705 -12.42797 -12.20510 -12.07266 -11.91038 -11.79753 -11.65035 -11.33319 -11.02792 -10.79403 -10.39029 -10.29760 -10.00860 -9.72134 -9.35371 -8.00737 -5.34061 -0.96775 0.02551 0.48275 0.68218 1.16979 1.35929 1.41911 1.47122 1.48946 1.63760 1.91647 1.98945 2.48335 3.29439 3.40144 3.51462 3.61978 3.66241 3.70909 3.85990 4.03133 4.16818 4.25949 4.30600 4.45421 4.46983 4.56090 4.66610 4.73111 4.81126 4.90325 4.92672 5.09832 5.24447 5.28945 5.72935 5.77763 6.22196 6.31472 6.97050 7.00494 7.07230 7.50070 7.81086 8.01065 9.20016 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012713 B = 0.003969 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.922661 B = 7053.112018 C = 8493.738571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.047 4.047 3 Si 0.933 3.067 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.300 1.300 7 C -0.225 4.225 8 H 0.069 0.931 9 N -0.740 5.740 10 C 0.167 3.833 11 H 0.084 0.916 12 C 0.065 3.935 13 O -0.585 6.585 14 C 0.130 3.870 15 N -0.710 5.710 16 C 0.574 3.426 17 O -0.551 6.551 18 C -0.293 4.293 19 S 0.307 5.693 20 C -0.193 4.193 21 C -0.144 4.144 22 C 0.157 3.843 23 N -0.237 5.237 24 C -0.039 4.039 25 C -0.056 4.056 26 N -0.311 5.311 27 N -0.082 5.082 28 H 0.257 0.743 29 H 0.362 0.638 30 H 0.068 0.932 31 H 0.039 0.961 32 H 0.388 0.612 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.408 0.592 36 H 0.227 0.773 37 H 0.188 0.812 38 H 0.236 0.764 39 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.784 2.280 14.917 21.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.239 4.239 3 Si 0.762 3.238 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.227 1.227 7 C -0.355 4.355 8 H 0.087 0.913 9 N -0.384 5.384 10 C 0.058 3.942 11 H 0.102 0.898 12 C -0.015 4.015 13 O -0.392 6.392 14 C 0.006 3.994 15 N -0.362 5.362 16 C 0.360 3.640 17 O -0.430 6.430 18 C -0.416 4.416 19 S 0.575 5.425 20 C -0.331 4.331 21 C -0.174 4.174 22 C 0.048 3.952 23 N -0.026 5.026 24 C -0.187 4.187 25 C -0.212 4.212 26 N -0.178 5.178 27 N -0.060 5.060 28 H 0.066 0.934 29 H 0.195 0.805 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.237 0.763 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.244 0.756 36 H 0.244 0.756 37 H 0.205 0.795 38 H 0.252 0.748 39 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 13.452 0.905 14.231 19.603 hybrid contribution 1.362 1.783 -0.220 2.255 sum 14.813 2.688 14.011 20.566 Atomic orbital electron populations 1.69841 1.06734 1.26450 1.59652 1.25222 0.95712 1.00195 1.02813 0.85745 0.78138 0.81221 0.78730 1.18907 1.19784 1.22736 1.19016 0.81904 0.93664 1.40949 0.91276 1.42723 1.02582 1.03186 1.89870 1.20814 0.90361 0.89112 0.93933 0.89791 1.22799 0.93678 0.91920 0.93123 1.86467 1.72371 1.52637 1.27681 1.21463 0.97563 0.98668 0.81704 1.45849 1.08652 1.63504 1.18180 1.17115 0.84616 0.78364 0.83905 1.90899 1.26414 1.53955 1.71771 1.24750 1.00698 1.15974 1.00164 1.83850 1.02480 1.50797 1.05398 1.25701 0.97440 1.05046 1.04957 1.19824 0.97445 1.03923 0.96216 1.17211 0.79968 1.02870 0.95155 1.44275 1.06272 1.10350 1.41689 1.24626 0.84728 1.01288 1.08054 1.24303 1.02464 0.90587 1.03800 1.75053 1.01622 1.22417 1.18726 1.78554 1.06393 1.06281 1.14794 0.93362 0.80480 0.91442 0.94273 0.76343 0.90212 0.92273 0.75583 0.75626 0.79499 0.74785 0.75614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -58.97 13.97 21.65 0.30 -58.67 16 2 C -0.05 -2.60 5.50 84.86 0.47 -2.14 16 3 Si 0.93 43.73 27.74 68.60 1.90 45.63 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.27 -12.52 6.51 99.48 0.65 -11.88 16 6 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 7 C -0.22 -11.71 10.41 84.03 0.87 -10.83 16 8 H 0.07 3.88 8.06 -2.91 -0.02 3.86 16 9 N -0.74 -32.29 4.31 -322.95 -1.39 -33.69 16 10 C 0.17 5.91 2.84 44.99 0.13 6.04 16 11 H 0.08 2.86 8.08 -2.39 -0.02 2.84 16 12 C 0.07 2.09 6.85 71.98 0.49 2.58 16 13 O -0.58 -19.07 12.64 -148.98 -1.88 -20.95 16 14 C 0.13 4.45 5.12 86.38 0.44 4.89 16 15 N -0.71 -23.76 5.38 -467.51 -2.52 -26.28 16 16 C 0.57 20.19 7.74 86.32 0.67 20.85 16 17 O -0.55 -23.32 14.17 -4.51 -0.06 -23.39 16 18 C -0.29 -8.07 6.46 24.13 0.16 -7.92 16 19 S 0.31 5.83 22.15 -56.49 -1.25 4.58 16 20 C -0.19 -2.15 10.90 66.77 0.73 -1.42 16 21 C -0.14 -2.03 9.95 21.18 0.21 -1.82 16 22 C 0.16 3.81 6.21 37.59 0.23 4.04 16 23 N -0.24 -6.65 3.05 -188.91 -0.58 -7.23 16 24 C -0.04 -0.78 11.45 83.36 0.95 0.17 16 25 C -0.06 -1.28 12.05 83.73 1.01 -0.27 16 26 N -0.31 -10.49 12.40 -58.24 -0.72 -11.21 16 27 N -0.08 -2.95 10.79 37.02 0.40 -2.55 16 28 H 0.26 14.95 8.31 -92.71 -0.77 14.17 16 29 H 0.36 16.34 5.65 -92.71 -0.52 15.82 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.39 8.77 9.12 -74.05 -0.68 8.10 16 33 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.06 2.27 7.39 -2.39 -0.02 2.26 16 35 H 0.41 13.06 7.26 -92.71 -0.67 12.38 16 36 H 0.23 0.57 8.06 -2.91 -0.02 0.54 16 37 H 0.19 1.40 8.06 -2.91 -0.02 1.37 16 38 H 0.24 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.23 2.97 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -83.77 353.33 -0.23 -84.00 By element: Atomic # 1 Polarization: 36.36 SS G_CDS: -0.79 Total: 35.57 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 6.36 Total: 14.18 kcal Atomic # 7 Polarization: -135.12 SS G_CDS: -4.50 Total: -139.62 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -1.95 Total: -44.34 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.90 Total: 45.63 kcal Atomic # 16 Polarization: 5.83 SS G_CDS: -1.25 Total: 4.58 kcal Total: -83.77 -0.23 -84.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331738350.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.726 kcal (2) G-P(sol) polarization free energy of solvation -83.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds