Wall clock time and date at job start Tue Mar 31 2020 19:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00368 * 2 1 4 4 H 1.48496 * 109.47124 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47414 * 300.00603 * 3 2 1 6 6 H 1.48507 * 109.47084 * 60.00404 * 3 2 1 7 7 C 1.38811 * 119.99602 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99887 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00125 * 0.27476 * 7 2 1 10 10 C 1.46507 * 119.99998 * 179.72908 * 9 7 2 11 11 H 1.08995 * 109.47326 * 34.99696 * 10 9 7 12 12 C 1.53004 * 109.46571 * 274.99491 * 10 9 7 13 13 O 1.42900 * 109.47400 * 294.99867 * 12 10 9 14 14 C 1.52999 * 109.47116 * 154.99828 * 10 9 7 15 15 N 1.46497 * 109.47037 * 304.99628 * 14 10 9 16 16 C 1.34774 * 120.00099 * 180.02562 * 15 14 10 17 17 O 1.21754 * 119.99952 * 0.02562 * 16 15 14 18 18 C 1.46212 * 120.00521 * 180.02562 * 16 15 14 19 19 S 1.75815 * 125.47302 * 354.58980 * 18 16 15 20 20 C 1.70569 * 91.67488 * 180.02562 * 19 18 16 21 21 C 1.33591 * 111.16407 * 0.02562 * 20 19 18 22 22 C 1.37326 * 125.48169 * 174.29023 * 18 16 15 23 23 N 1.39966 * 123.47997 * 359.97438 * 22 18 16 24 24 C 1.36157 * 125.94023 * 131.03054 * 23 22 18 25 25 C 1.35364 * 106.04495 * 179.97438 * 24 23 22 26 26 N 1.33790 * 106.53732 * 359.97438 * 25 24 23 27 27 N 1.28601 * 109.06851 * 359.73464 * 26 25 24 28 28 H 0.97006 * 119.99700 * 359.97438 * 1 2 3 29 29 H 0.97006 * 120.00502 * 359.72329 * 9 7 2 30 30 H 1.08993 * 109.47319 * 55.00234 * 12 10 9 31 31 H 1.09001 * 109.46825 * 175.00128 * 12 10 9 32 32 H 0.96696 * 114.00266 * 180.02562 * 13 12 10 33 33 H 1.09004 * 109.47030 * 64.99635 * 14 10 9 34 34 H 1.08996 * 109.47191 * 184.99553 * 14 10 9 35 35 H 0.97001 * 120.00113 * 0.02562 * 15 14 10 36 36 H 1.08000 * 124.41971 * 179.97438 * 20 19 18 37 37 H 1.08007 * 122.45858 * 180.02562 * 21 20 19 38 38 H 1.07997 * 126.97665 * 359.97438 * 24 23 22 39 39 H 1.08004 * 126.72901 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0133 11 1 2.9686 -3.5537 0.5766 12 6 2.4217 -4.0281 -1.4524 13 8 1.2275 -4.2771 -2.1965 14 6 1.1807 -4.7552 0.5906 15 7 0.7342 -4.3455 1.9243 16 6 -0.0549 -5.1615 2.6510 17 8 -0.3962 -6.2393 2.1992 18 6 -0.5011 -4.7524 3.9819 19 16 0.0095 -3.2975 4.8268 20 6 -0.9671 -3.6762 6.1729 21 6 -1.6256 -4.8231 5.9837 22 6 -1.3906 -5.4397 4.7706 23 7 -1.9928 -6.6435 4.3868 24 6 -2.0633 -7.7769 5.1380 25 6 -2.7256 -8.6851 4.3837 26 7 -3.0236 -8.0770 3.2298 27 7 -2.5823 -6.8696 3.2650 28 1 -0.4850 0.8401 0.0004 29 1 0.3554 -2.3880 -0.0067 30 1 2.9714 -3.2066 -1.9117 31 1 3.0422 -4.9242 -1.4505 32 1 1.3826 -4.5190 -3.1198 33 1 0.3131 -4.9198 -0.0485 34 1 1.7555 -5.6781 0.6675 35 1 1.0064 -3.4869 2.2844 36 1 -1.0426 -3.0687 7.0626 37 1 -2.2973 -5.2346 6.7226 38 1 -1.6707 -7.9219 6.1336 39 1 -2.9661 -9.7013 4.6593 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331738351.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:48 Heat of formation + Delta-G solvation = 83.306655 kcal Electronic energy + Delta-G solvation = -26538.767507 eV Core-core repulsion = 22611.994175 eV Total energy + Delta-G solvation = -3926.773332 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.24165 -39.64805 -38.20472 -37.03892 -34.91320 -33.63034 -33.46196 -31.53992 -31.01432 -29.93468 -28.28645 -26.21606 -24.82895 -23.66046 -22.88567 -22.26113 -21.28053 -20.20211 -19.77595 -18.62698 -17.61405 -17.28699 -16.62308 -16.18021 -15.67246 -15.62005 -15.08862 -15.07405 -14.81479 -14.49884 -14.06225 -14.02153 -13.67680 -13.42138 -13.27349 -13.01185 -12.79861 -12.77555 -12.00891 -11.54230 -11.42673 -11.34045 -10.96844 -10.92890 -10.88812 -10.60029 -10.56455 -10.10985 -9.90371 -9.79926 -9.37856 -9.30805 -9.19206 -9.02373 -8.77555 -8.65273 -7.07670 -5.84453 -3.15541 0.05095 0.99324 1.37301 1.54973 2.11552 2.48088 2.72240 3.20595 3.35308 3.39769 3.41763 3.44286 4.38393 4.48934 4.64551 4.65762 4.90195 4.92463 5.00453 5.20721 5.25623 5.37729 5.47008 5.48432 5.52977 5.55266 5.83537 5.87516 5.99250 6.02180 6.17915 6.31169 6.48067 6.70847 6.74372 6.78386 7.59560 7.75919 8.20715 8.31926 8.40190 8.62587 9.44310 9.99118 10.36000 11.36840 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012883 B = 0.003663 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.872780 B = 7642.689510 C = 9201.851455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.006 4.006 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.071 0.929 9 N -0.714 5.714 10 C 0.165 3.835 11 H 0.066 0.934 12 C 0.060 3.940 13 O -0.560 6.560 14 C 0.120 3.880 15 N -0.704 5.704 16 C 0.576 3.424 17 O -0.513 6.513 18 C -0.240 4.240 19 S 0.307 5.693 20 C -0.234 4.234 21 C -0.141 4.141 22 C 0.157 3.843 23 N -0.228 5.228 24 C -0.055 4.055 25 C -0.050 4.050 26 N -0.273 5.273 27 N -0.023 5.023 28 H 0.256 0.744 29 H 0.389 0.611 30 H 0.049 0.951 31 H 0.027 0.973 32 H 0.364 0.636 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.406 0.594 36 H 0.182 0.818 37 H 0.154 0.846 38 H 0.188 0.812 39 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.423 -10.893 14.797 18.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.735 3.265 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.381 4.381 8 H 0.089 0.911 9 N -0.356 5.356 10 C 0.054 3.946 11 H 0.084 0.916 12 C -0.021 4.021 13 O -0.363 6.363 14 C -0.003 4.003 15 N -0.356 5.356 16 C 0.360 3.640 17 O -0.390 6.390 18 C -0.364 4.364 19 S 0.575 5.425 20 C -0.372 4.372 21 C -0.173 4.173 22 C 0.049 3.951 23 N -0.018 5.018 24 C -0.203 4.203 25 C -0.205 4.205 26 N -0.140 5.140 27 N -0.002 5.002 28 H 0.066 0.934 29 H 0.224 0.776 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.209 0.791 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.242 0.758 36 H 0.199 0.801 37 H 0.171 0.829 38 H 0.205 0.795 39 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 1.605 -9.595 13.340 16.511 hybrid contribution -0.027 -0.242 1.096 1.123 sum 1.578 -9.837 14.436 17.540 Atomic orbital electron populations 1.69696 1.05062 1.25648 1.56618 1.24749 0.95431 0.97610 1.02546 0.86178 0.78756 0.84271 0.77258 1.20592 1.21878 1.21817 1.19253 0.90937 0.83995 1.43867 0.91115 1.42410 1.06117 0.99045 1.88018 1.20604 0.94946 0.86989 0.92062 0.91619 1.23009 0.86567 0.97316 0.95249 1.86578 1.32048 1.92085 1.25563 1.21616 0.99829 0.97040 0.81859 1.45827 1.50313 1.21241 1.18248 1.16674 0.79494 0.85091 0.82786 1.90921 1.55680 1.21873 1.70482 1.24991 1.06391 1.03004 1.02012 1.83719 1.38603 1.16010 1.04135 1.25168 1.04488 1.01613 1.05952 1.19550 1.04390 0.96505 0.96886 1.16603 0.96720 0.86970 0.94763 1.44041 1.36840 1.08823 1.12054 1.23779 1.08313 0.86846 1.01358 1.23561 1.03412 1.01639 0.91844 1.75159 1.19117 0.99655 1.20091 1.78677 1.07665 1.11984 1.01886 0.93424 0.77603 0.93243 0.95520 0.79085 0.90075 0.91844 0.75797 0.80051 0.82889 0.79477 0.79300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.70 13.06 55.49 0.72 -25.97 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.90 21.16 29.55 -169.99 -5.02 16.13 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 7 C -0.25 -6.40 9.93 -15.06 -0.15 -6.55 16 8 H 0.07 1.75 7.83 -52.49 -0.41 1.33 16 9 N -0.71 -16.77 4.51 -53.42 -0.24 -17.01 16 10 C 0.17 3.11 2.84 -67.92 -0.19 2.92 16 11 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 12 C 0.06 1.04 6.86 37.16 0.25 1.29 16 13 O -0.56 -10.15 12.64 -35.23 -0.45 -10.60 16 14 C 0.12 2.19 5.12 -4.04 -0.02 2.17 16 15 N -0.70 -12.42 5.38 -61.76 -0.33 -12.76 16 16 C 0.58 10.51 7.74 -13.06 -0.10 10.41 16 17 O -0.51 -10.98 14.17 5.14 0.07 -10.91 16 18 C -0.24 -3.59 6.45 -36.71 -0.24 -3.82 16 19 S 0.31 3.37 22.15 -107.50 -2.38 0.99 16 20 C -0.23 -1.96 10.90 29.10 0.32 -1.64 16 21 C -0.14 -1.38 9.95 -41.26 -0.41 -1.79 16 22 C 0.16 2.17 6.21 -84.53 -0.52 1.65 16 23 N -0.23 -3.53 3.05 -11.06 -0.03 -3.56 16 24 C -0.06 -0.65 11.45 -16.66 -0.19 -0.84 16 25 C -0.05 -0.63 12.05 -17.72 -0.21 -0.84 16 26 N -0.27 -4.82 12.39 30.24 0.37 -4.45 16 27 N -0.02 -0.43 10.80 60.35 0.65 0.22 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.39 10.26 7.80 -40.82 -0.32 9.95 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.36 4.80 9.12 45.56 0.42 5.21 16 33 H 0.08 1.69 7.39 -51.93 -0.38 1.31 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.41 6.97 7.26 -40.82 -0.30 6.67 16 36 H 0.18 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.15 1.10 8.06 -52.48 -0.42 0.67 16 38 H 0.19 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.19 1.57 8.06 -52.48 -0.42 1.14 16 LS Contribution 356.47 15.07 5.37 5.37 Total: -1.00 -36.13 356.47 -6.33 -42.47 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -3.51 Total: 17.39 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -1.57 Total: 2.68 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: 1.14 Total: -63.53 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.37 Total: -21.50 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -2.38 Total: 0.99 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.13 -6.33 -42.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331738351.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.772 kcal (2) G-P(sol) polarization free energy of solvation -36.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds