Wall clock time and date at job start Tue Mar 31 2020 19:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00368 * 2 1 4 4 H 1.48496 * 109.47124 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47414 * 300.00603 * 3 2 1 6 6 H 1.48507 * 109.47084 * 60.00404 * 3 2 1 7 7 C 1.38811 * 119.99602 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99887 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00125 * 0.27476 * 7 2 1 10 10 C 1.46507 * 119.99998 * 179.72908 * 9 7 2 11 11 H 1.08995 * 109.47326 * 34.99696 * 10 9 7 12 12 C 1.53004 * 109.46571 * 274.99491 * 10 9 7 13 13 O 1.42900 * 109.47400 * 294.99867 * 12 10 9 14 14 C 1.52999 * 109.47116 * 154.99828 * 10 9 7 15 15 N 1.46497 * 109.47037 * 304.99628 * 14 10 9 16 16 C 1.34774 * 120.00099 * 180.02562 * 15 14 10 17 17 O 1.21754 * 119.99952 * 0.02562 * 16 15 14 18 18 C 1.46212 * 120.00521 * 180.02562 * 16 15 14 19 19 S 1.75815 * 125.47302 * 354.58980 * 18 16 15 20 20 C 1.70569 * 91.67488 * 180.02562 * 19 18 16 21 21 C 1.33591 * 111.16407 * 0.02562 * 20 19 18 22 22 C 1.37326 * 125.48169 * 174.29023 * 18 16 15 23 23 N 1.39966 * 123.47997 * 359.97438 * 22 18 16 24 24 C 1.36157 * 125.94023 * 131.03054 * 23 22 18 25 25 C 1.35364 * 106.04495 * 179.97438 * 24 23 22 26 26 N 1.33790 * 106.53732 * 359.97438 * 25 24 23 27 27 N 1.28601 * 109.06851 * 359.73464 * 26 25 24 28 28 H 0.97006 * 119.99700 * 359.97438 * 1 2 3 29 29 H 0.97006 * 120.00502 * 359.72329 * 9 7 2 30 30 H 1.08993 * 109.47319 * 55.00234 * 12 10 9 31 31 H 1.09001 * 109.46825 * 175.00128 * 12 10 9 32 32 H 0.96696 * 114.00266 * 180.02562 * 13 12 10 33 33 H 1.09004 * 109.47030 * 64.99635 * 14 10 9 34 34 H 1.08996 * 109.47191 * 184.99553 * 14 10 9 35 35 H 0.97001 * 120.00113 * 0.02562 * 15 14 10 36 36 H 1.08000 * 124.41971 * 179.97438 * 20 19 18 37 37 H 1.08007 * 122.45858 * 180.02562 * 21 20 19 38 38 H 1.07997 * 126.97665 * 359.97438 * 24 23 22 39 39 H 1.08004 * 126.72901 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0133 11 1 2.9686 -3.5537 0.5766 12 6 2.4217 -4.0281 -1.4524 13 8 1.2275 -4.2771 -2.1965 14 6 1.1807 -4.7552 0.5906 15 7 0.7342 -4.3455 1.9243 16 6 -0.0549 -5.1615 2.6510 17 8 -0.3962 -6.2393 2.1992 18 6 -0.5011 -4.7524 3.9819 19 16 0.0095 -3.2975 4.8268 20 6 -0.9671 -3.6762 6.1729 21 6 -1.6256 -4.8231 5.9837 22 6 -1.3906 -5.4397 4.7706 23 7 -1.9928 -6.6435 4.3868 24 6 -2.0633 -7.7769 5.1380 25 6 -2.7256 -8.6851 4.3837 26 7 -3.0236 -8.0770 3.2298 27 7 -2.5823 -6.8696 3.2650 28 1 -0.4850 0.8401 0.0004 29 1 0.3554 -2.3880 -0.0067 30 1 2.9714 -3.2066 -1.9117 31 1 3.0422 -4.9242 -1.4505 32 1 1.3826 -4.5190 -3.1198 33 1 0.3131 -4.9198 -0.0485 34 1 1.7555 -5.6781 0.6675 35 1 1.0064 -3.4869 2.2844 36 1 -1.0426 -3.0687 7.0626 37 1 -2.2973 -5.2346 6.7226 38 1 -1.6707 -7.9219 6.1336 39 1 -2.9661 -9.7013 4.6593 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331738351.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:47 Heat of formation + Delta-G solvation = 52.821434 kcal Electronic energy + Delta-G solvation = -26540.089445 eV Core-core repulsion = 22611.994175 eV Total energy + Delta-G solvation = -3928.095270 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.30444 -40.94271 -39.27832 -38.49132 -36.43042 -35.26705 -34.54857 -33.26208 -32.05396 -31.12340 -29.89245 -27.38251 -26.09905 -25.55976 -23.84088 -23.31118 -22.46125 -21.72198 -20.79396 -19.90676 -19.26812 -18.41941 -18.15645 -17.33721 -17.08482 -16.77623 -16.43849 -16.27185 -15.94363 -15.69585 -15.44510 -15.25456 -14.92538 -14.89029 -14.61133 -14.47345 -14.10643 -13.72650 -13.59666 -13.06497 -12.77448 -12.66618 -12.58506 -12.24523 -12.15414 -12.04988 -11.88434 -11.73383 -11.63563 -11.29061 -10.97729 -10.74561 -10.36073 -10.26141 -9.95633 -9.66811 -9.01723 -7.88352 -5.19042 -0.92928 0.07444 0.50634 0.73231 1.19501 1.50766 1.52790 1.52977 1.61583 1.65936 1.90031 2.11605 2.58699 3.42942 3.54692 3.58571 3.66023 3.74378 3.86105 3.96174 4.06887 4.18495 4.27232 4.38606 4.48215 4.51957 4.56734 4.69715 4.79239 4.84311 4.94641 4.96533 5.17871 5.26817 5.35064 5.56350 5.75885 6.29053 6.37841 7.02720 7.05847 7.37273 7.52916 8.07314 8.34356 9.34466 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012883 B = 0.003663 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.872780 B = 7642.689510 C = 9201.851455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.068 4.068 3 Si 0.968 3.032 4 H -0.263 1.263 5 H -0.304 1.304 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.084 0.916 9 N -0.723 5.723 10 C 0.162 3.838 11 H 0.084 0.916 12 C 0.064 3.936 13 O -0.585 6.585 14 C 0.132 3.868 15 N -0.704 5.704 16 C 0.572 3.428 17 O -0.555 6.555 18 C -0.293 4.293 19 S 0.319 5.681 20 C -0.197 4.197 21 C -0.145 4.145 22 C 0.152 3.848 23 N -0.235 5.235 24 C -0.037 4.037 25 C -0.057 4.057 26 N -0.314 5.314 27 N -0.089 5.089 28 H 0.248 0.752 29 H 0.371 0.629 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.385 0.615 33 H 0.048 0.952 34 H 0.078 0.922 35 H 0.407 0.593 36 H 0.228 0.772 37 H 0.187 0.813 38 H 0.239 0.761 39 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.914 -10.980 17.919 21.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.261 4.261 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.232 1.232 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.102 0.898 9 N -0.363 5.363 10 C 0.053 3.947 11 H 0.102 0.898 12 C -0.016 4.016 13 O -0.392 6.392 14 C 0.008 3.992 15 N -0.356 5.356 16 C 0.358 3.642 17 O -0.435 6.435 18 C -0.416 4.416 19 S 0.587 5.413 20 C -0.335 4.335 21 C -0.175 4.175 22 C 0.044 3.956 23 N -0.024 5.024 24 C -0.185 4.185 25 C -0.213 4.213 26 N -0.180 5.180 27 N -0.067 5.067 28 H 0.057 0.943 29 H 0.203 0.797 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.233 0.767 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.244 0.756 36 H 0.244 0.756 37 H 0.204 0.796 38 H 0.256 0.744 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 3.158 -9.694 16.435 19.341 hybrid contribution -0.465 -0.329 0.229 0.614 sum 2.693 -10.023 16.665 19.632 Atomic orbital electron populations 1.69868 1.06727 1.25737 1.59263 1.25485 0.96080 1.00796 1.03730 0.85157 0.78442 0.80277 0.76309 1.18724 1.23220 1.21940 1.19654 0.91534 0.84632 1.41071 0.89846 1.42514 1.05340 1.00260 1.88221 1.20856 0.95028 0.85190 0.93646 0.89799 1.22886 0.86509 0.98718 0.93537 1.86539 1.32978 1.92266 1.27431 1.21408 0.98480 0.97485 0.81817 1.45794 1.50530 1.21296 1.17942 1.17158 0.78597 0.84433 0.83990 1.90886 1.57066 1.23583 1.71965 1.24778 1.09408 1.05976 1.01446 1.83676 1.38918 1.13912 1.04822 1.25715 1.01369 1.00754 1.05673 1.19809 1.05166 0.96654 0.95879 1.17234 0.95920 0.86612 0.95865 1.44296 1.36249 1.10175 1.11715 1.24654 1.06230 0.85049 1.02535 1.24339 1.03043 1.03417 0.90474 1.75062 1.20281 1.00063 1.22628 1.78634 1.10746 1.13022 1.04296 0.94262 0.79719 0.94117 0.91697 0.76673 0.93407 0.90385 0.75597 0.75566 0.79553 0.74427 0.75466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.32 13.06 21.65 0.28 -57.03 16 2 C -0.07 -3.69 5.50 84.86 0.47 -3.23 16 3 Si 0.97 43.62 29.55 68.60 2.03 45.64 16 4 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 7 C -0.24 -12.10 9.93 84.03 0.83 -11.27 16 8 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 9 N -0.72 -34.44 4.51 -322.93 -1.46 -35.90 16 10 C 0.16 6.07 2.84 44.99 0.13 6.20 16 11 H 0.08 2.85 8.08 -2.39 -0.02 2.83 16 12 C 0.06 2.15 6.86 71.98 0.49 2.65 16 13 O -0.59 -21.31 12.64 -148.98 -1.88 -23.19 16 14 C 0.13 4.96 5.12 86.38 0.44 5.41 16 15 N -0.70 -25.83 5.38 -467.52 -2.52 -28.34 16 16 C 0.57 21.89 7.74 86.31 0.67 22.56 16 17 O -0.55 -25.25 14.17 -4.52 -0.06 -25.31 16 18 C -0.29 -8.82 6.45 24.13 0.16 -8.67 16 19 S 0.32 6.51 22.15 -56.49 -1.25 5.26 16 20 C -0.20 -2.50 10.90 66.77 0.73 -1.77 16 21 C -0.14 -2.32 9.95 21.18 0.21 -2.11 16 22 C 0.15 4.07 6.21 37.59 0.23 4.30 16 23 N -0.24 -7.18 3.05 -188.91 -0.58 -7.76 16 24 C -0.04 -0.78 11.45 83.36 0.95 0.18 16 25 C -0.06 -1.39 12.05 83.73 1.01 -0.38 16 26 N -0.31 -11.47 12.39 -58.24 -0.72 -12.20 16 27 N -0.09 -3.53 10.80 37.02 0.40 -3.13 16 28 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 29 H 0.37 20.32 7.80 -92.70 -0.72 19.60 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.39 9.98 9.12 -74.06 -0.68 9.30 16 33 H 0.05 2.11 7.39 -2.38 -0.02 2.10 16 34 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.41 14.43 7.26 -92.71 -0.67 13.76 16 36 H 0.23 0.84 8.06 -2.91 -0.02 0.81 16 37 H 0.19 1.72 8.06 -2.91 -0.02 1.70 16 38 H 0.24 2.22 8.06 -2.91 -0.02 2.20 16 39 H 0.23 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -84.99 356.47 -0.37 -85.36 By element: Atomic # 1 Polarization: 43.67 SS G_CDS: -0.93 Total: 42.74 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 6.32 Total: 13.86 kcal Atomic # 7 Polarization: -139.78 SS G_CDS: -4.59 Total: -144.36 kcal Atomic # 8 Polarization: -46.55 SS G_CDS: -1.95 Total: -48.50 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: 6.51 SS G_CDS: -1.25 Total: 5.26 kcal Total: -84.99 -0.37 -85.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331738351.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.177 kcal (2) G-P(sol) polarization free energy of solvation -84.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds