Wall clock time and date at job start Tue Mar 31 2020 19:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38137 * 120.48773 * 2 1 4 4 N 1.31818 * 120.91847 * 180.30931 * 3 2 1 5 5 C 1.31918 * 122.02552 * 359.72067 * 4 3 2 6 6 Cl 1.73602 * 119.56487 * 180.02562 * 5 4 3 7 7 C 1.38306 * 120.86803 * 359.97438 * 5 4 3 8 8 C 1.39780 * 118.98730 * 0.02562 * 7 5 4 9 9 C 1.48143 * 120.91762 * 180.02562 * 8 7 5 10 10 O 1.21508 * 120.00419 * 234.47334 * 9 8 7 11 11 N 1.34776 * 120.00082 * 54.46950 * 9 8 7 12 12 C 1.46961 * 120.59629 * 185.55607 * 11 9 8 13 13 C 1.53372 * 108.63811 * 235.20231 * 12 11 9 14 14 N 1.46968 * 108.63356 * 310.58054 * 13 12 11 15 15 C 1.34776 * 120.58915 * 235.20010 * 14 13 12 16 16 O 1.21683 * 120.00288 * 5.30077 * 15 14 13 17 17 C 1.46380 * 119.99853 * 185.30199 * 15 14 13 18 18 H 1.08001 * 119.99888 * 354.96855 * 17 15 14 19 19 C 1.40042 * 119.99943 * 174.97708 * 17 15 14 20 20 N 1.30668 * 120.00293 * 359.97438 * 19 17 15 21 21 Si 1.86804 * 119.99821 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46779 * 179.97438 * 21 19 17 23 23 H 1.48498 * 109.46913 * 299.99538 * 21 19 17 24 24 H 1.48501 * 109.47053 * 60.00134 * 21 19 17 25 25 C 1.46963 * 118.81504 * 55.47155 * 14 13 12 26 26 C 1.46965 * 120.59466 * 5.53043 * 11 9 8 27 27 H 1.08997 * 109.47137 * 275.15241 * 1 2 3 28 28 H 1.09008 * 109.46942 * 35.15001 * 1 2 3 29 29 H 1.09000 * 109.46958 * 155.14995 * 1 2 3 30 30 H 1.08006 * 119.53745 * 0.02927 * 3 2 1 31 31 H 1.07992 * 120.50673 * 179.97438 * 7 5 4 32 32 H 1.09005 * 109.61410 * 115.46107 * 12 11 9 33 33 H 1.09001 * 109.61074 * 354.95207 * 12 11 9 34 34 H 1.08996 * 109.61349 * 190.83223 * 13 12 11 35 35 H 1.08997 * 109.60770 * 70.31679 * 13 12 11 36 36 H 0.97005 * 120.00333 * 180.02562 * 20 19 17 37 37 H 1.09001 * 109.60717 * 64.26862 * 25 14 13 38 38 H 1.08996 * 109.60962 * 184.78152 * 25 14 13 39 39 H 1.08998 * 109.61534 * 244.54371 * 26 11 9 40 40 H 1.09004 * 109.60955 * 5.05402 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2078 1.1904 0.0000 4 7 3.5259 1.2003 -0.0061 5 6 4.2339 0.0872 -0.0070 6 17 5.9677 0.1748 -0.0145 7 6 3.6130 -1.1487 -0.0010 8 6 2.2164 -1.2051 0.0056 9 6 1.5071 -2.5057 0.0128 10 8 0.6755 -2.7489 -0.8391 11 7 1.7843 -3.4192 0.9642 12 6 1.1798 -4.7578 0.9146 13 6 0.4550 -5.0176 2.2411 14 7 1.3677 -4.6930 3.3463 15 6 1.6449 -5.6065 4.2977 16 8 1.2159 -6.7407 4.1957 17 6 2.4619 -5.2343 5.4538 18 1 2.9100 -4.2530 5.5049 19 6 2.6627 -6.1508 6.4935 20 7 2.1203 -7.3380 6.4319 21 14 3.7060 -5.6760 7.9685 22 1 3.7623 -6.8135 8.9216 23 1 5.0799 -5.3407 7.5156 24 1 3.1046 -4.4966 8.6412 25 6 1.9678 -3.3526 3.3989 26 6 2.6970 -3.0947 2.0694 27 1 -0.3633 0.0923 1.0235 28 1 -0.3633 0.8403 -0.5917 29 1 -0.3633 -0.9325 -0.4319 30 1 1.6682 2.1260 0.0005 31 1 4.1983 -2.0562 -0.0021 32 1 1.9592 -5.5062 0.7710 33 1 0.4662 -4.8067 0.0921 34 1 0.1666 -6.0670 2.3010 35 1 -0.4324 -4.3877 2.3025 36 1 2.2591 -7.9727 7.1522 37 1 1.1856 -2.6068 3.5409 38 1 2.6788 -3.3022 4.2236 39 1 3.5845 -3.7246 2.0080 40 1 2.9855 -2.0452 2.0096 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336783978.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:09 Heat of formation + Delta-G solvation = -25.697208 kcal Electronic energy + Delta-G solvation = -26918.442878 eV Core-core repulsion = 22952.606327 eV Total energy + Delta-G solvation = -3965.836552 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.22040 -39.62191 -38.06247 -36.96125 -36.02850 -33.88051 -33.36511 -32.60435 -32.40976 -30.96664 -27.95099 -27.36979 -26.28112 -24.88621 -23.51636 -22.69146 -22.06518 -20.33134 -19.02308 -17.95797 -17.38307 -16.68437 -16.14754 -15.77986 -15.73499 -15.42623 -15.12823 -14.82991 -14.60838 -14.28508 -14.19971 -14.10271 -13.77612 -13.42798 -13.29771 -12.72827 -12.50809 -12.14428 -12.12025 -11.81115 -11.71743 -11.59325 -11.53624 -11.28638 -11.14151 -11.02849 -10.88173 -10.53846 -10.34726 -10.21113 -10.11313 -9.71106 -9.15929 -9.00576 -8.83746 -7.74143 -7.37880 -6.31717 -4.78351 0.41727 0.50449 1.45825 2.41775 2.78502 3.07766 3.13746 3.14812 3.21090 3.94067 3.99712 4.14594 4.33428 4.35122 4.41328 4.43664 4.64735 5.03173 5.05717 5.16568 5.17908 5.29011 5.35686 5.40094 5.46343 5.49279 5.60012 5.76901 5.81352 5.89708 5.91324 6.05925 6.17086 6.23600 6.39882 6.52987 7.25183 7.27361 7.32714 7.39199 7.91330 7.95921 8.17537 8.89658 9.25066 10.43303 10.61924 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012605 B = 0.003418 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.887774 B = 8189.367704 C = 9551.730960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.086 4.086 3 C 0.118 3.882 4 N -0.464 5.464 5 C 0.166 3.834 6 Cl -0.025 7.025 7 C -0.120 4.120 8 C -0.065 4.065 9 C 0.562 3.438 10 O -0.531 6.531 11 N -0.591 5.591 12 C 0.098 3.902 13 C 0.108 3.892 14 N -0.643 5.643 15 C 0.559 3.441 16 O -0.574 6.574 17 C -0.545 4.545 18 H 0.073 0.927 19 C 0.089 3.911 20 N -0.766 5.766 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.267 1.267 24 H -0.267 1.267 25 C 0.111 3.889 26 C 0.084 3.916 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.172 0.828 31 H 0.152 0.848 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.048 0.952 36 H 0.271 0.729 37 H 0.048 0.952 38 H 0.108 0.892 39 H 0.080 0.920 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.234 15.703 -11.035 19.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.089 4.089 3 C -0.039 4.039 4 N -0.175 5.175 5 C 0.002 3.998 6 Cl 0.004 6.996 7 C -0.141 4.141 8 C -0.076 4.076 9 C 0.348 3.652 10 O -0.408 6.408 11 N -0.323 5.323 12 C -0.024 4.024 13 C -0.017 4.017 14 N -0.382 5.382 15 C 0.365 3.635 16 O -0.456 6.456 17 C -0.582 4.582 18 H 0.091 0.909 19 C -0.132 4.132 20 N -0.394 5.394 21 Si 0.731 3.269 22 H -0.205 1.205 23 H -0.192 1.192 24 H -0.192 1.192 25 C -0.014 4.014 26 C -0.040 4.040 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.189 0.811 31 H 0.170 0.830 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.126 0.874 39 H 0.098 0.902 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.129 15.483 -11.426 19.360 hybrid contribution 0.487 -0.338 0.770 0.971 sum 2.616 15.145 -10.657 18.702 Atomic orbital electron populations 1.21001 0.88858 1.05345 1.03374 1.21089 0.98551 0.92212 0.97070 1.22597 0.87886 0.97832 0.95623 1.66893 1.08597 1.30541 1.11432 1.21453 0.87877 0.89583 1.00879 1.98423 1.06157 1.98599 1.96467 1.21977 0.93678 0.98420 1.00034 1.20207 0.93108 0.94526 0.99764 1.18060 0.82237 0.83009 0.81879 1.90762 1.33265 1.78435 1.38371 1.48068 1.45961 1.13694 1.24578 1.22212 0.98580 0.81663 0.99970 1.21512 0.92064 1.02744 0.85415 1.48216 1.49554 1.13273 1.27134 1.18287 0.80680 0.83164 0.81345 1.90603 1.57205 1.19956 1.77854 1.20903 1.33147 1.00927 1.03197 0.90946 1.25714 0.94523 0.94136 0.98797 1.69987 1.34363 1.04618 1.30415 0.86448 0.80711 0.78831 0.80923 1.20472 1.19151 1.19207 1.21870 0.97579 0.86044 0.95956 1.22581 0.93071 1.01134 0.87198 0.90142 0.90364 0.88956 0.81084 0.83032 0.90714 0.88648 0.88303 0.93368 0.91864 0.93382 0.87394 0.90177 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 9.74 36.00 0.35 -0.79 16 2 C -0.09 -0.88 5.93 -104.06 -0.62 -1.50 16 3 C 0.12 1.09 10.87 -17.59 -0.19 0.90 16 4 N -0.46 -5.18 10.31 -10.41 -0.11 -5.29 16 5 C 0.17 1.83 7.27 -17.49 -0.13 1.70 16 6 Cl -0.02 -0.25 29.10 -51.86 -1.51 -1.76 16 7 C -0.12 -1.29 7.66 -38.98 -0.30 -1.59 16 8 C -0.06 -0.76 4.62 -104.66 -0.48 -1.24 16 9 C 0.56 7.81 6.62 -12.19 -0.08 7.72 16 10 O -0.53 -8.62 14.62 5.36 0.08 -8.54 16 11 N -0.59 -8.36 2.95 -173.22 -0.51 -8.87 16 12 C 0.10 1.51 6.60 -3.60 -0.02 1.49 16 13 C 0.11 1.96 6.60 -3.59 -0.02 1.93 16 14 N -0.64 -13.38 2.94 -173.87 -0.51 -13.89 16 15 C 0.56 14.85 7.62 -12.98 -0.10 14.76 16 16 O -0.57 -17.59 14.45 5.20 0.08 -17.51 16 17 C -0.55 -14.25 8.86 -35.63 -0.32 -14.57 16 18 H 0.07 1.69 5.66 -52.49 -0.30 1.39 16 19 C 0.09 2.34 5.50 -17.37 -0.10 2.24 16 20 N -0.77 -21.94 11.84 55.55 0.66 -21.28 16 21 Si 0.91 19.02 29.56 -169.99 -5.02 14.00 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 25 C 0.11 1.83 6.51 -3.37 -0.02 1.80 16 26 C 0.08 1.12 5.88 -3.37 -0.02 1.10 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.51 8.13 -51.92 -0.42 0.09 16 29 H 0.09 1.05 5.70 -51.93 -0.30 0.75 16 30 H 0.17 1.02 8.06 -52.48 -0.42 0.59 16 31 H 0.15 1.46 7.84 -52.49 -0.41 1.04 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.10 1.40 6.99 -51.93 -0.36 1.04 16 34 H 0.10 2.00 6.99 -51.93 -0.36 1.64 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.11 1.83 5.34 -51.93 -0.28 1.55 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.08 0.93 5.32 -51.93 -0.28 0.66 16 LS Contribution 346.41 15.07 5.22 5.22 Total: -1.00 -33.57 346.41 -8.06 -41.63 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -4.38 Total: 2.35 kcal Atomic # 6 Polarization: 16.01 SS G_CDS: -2.05 Total: 13.97 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.47 Total: -49.34 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: 0.15 Total: -26.06 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 14.00 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.51 Total: -1.76 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.57 -8.06 -41.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336783978.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.931 kcal (2) G-P(sol) polarization free energy of solvation -33.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds