Wall clock time and date at job start Tue Mar 31 2020 19:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38137 * 120.48773 * 2 1 4 4 N 1.31818 * 120.91847 * 180.30931 * 3 2 1 5 5 C 1.31918 * 122.02552 * 359.72067 * 4 3 2 6 6 Cl 1.73602 * 119.56487 * 180.02562 * 5 4 3 7 7 C 1.38306 * 120.86803 * 359.97438 * 5 4 3 8 8 C 1.39780 * 118.98730 * 0.02562 * 7 5 4 9 9 C 1.48143 * 120.91762 * 180.02562 * 8 7 5 10 10 O 1.21508 * 120.00419 * 234.47334 * 9 8 7 11 11 N 1.34776 * 120.00082 * 54.46950 * 9 8 7 12 12 C 1.46961 * 120.59629 * 185.55607 * 11 9 8 13 13 C 1.53372 * 108.63811 * 235.20231 * 12 11 9 14 14 N 1.46968 * 108.63356 * 310.58054 * 13 12 11 15 15 C 1.34776 * 120.58915 * 235.20010 * 14 13 12 16 16 O 1.21683 * 120.00288 * 5.30077 * 15 14 13 17 17 C 1.46380 * 119.99853 * 185.30199 * 15 14 13 18 18 H 1.08001 * 119.99888 * 354.96855 * 17 15 14 19 19 C 1.40042 * 119.99943 * 174.97708 * 17 15 14 20 20 N 1.30668 * 120.00293 * 359.97438 * 19 17 15 21 21 Si 1.86804 * 119.99821 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46779 * 179.97438 * 21 19 17 23 23 H 1.48498 * 109.46913 * 299.99538 * 21 19 17 24 24 H 1.48501 * 109.47053 * 60.00134 * 21 19 17 25 25 C 1.46963 * 118.81504 * 55.47155 * 14 13 12 26 26 C 1.46965 * 120.59466 * 5.53043 * 11 9 8 27 27 H 1.08997 * 109.47137 * 275.15241 * 1 2 3 28 28 H 1.09008 * 109.46942 * 35.15001 * 1 2 3 29 29 H 1.09000 * 109.46958 * 155.14995 * 1 2 3 30 30 H 1.08006 * 119.53745 * 0.02927 * 3 2 1 31 31 H 1.07992 * 120.50673 * 179.97438 * 7 5 4 32 32 H 1.09005 * 109.61410 * 115.46107 * 12 11 9 33 33 H 1.09001 * 109.61074 * 354.95207 * 12 11 9 34 34 H 1.08996 * 109.61349 * 190.83223 * 13 12 11 35 35 H 1.08997 * 109.60770 * 70.31679 * 13 12 11 36 36 H 0.97005 * 120.00333 * 180.02562 * 20 19 17 37 37 H 1.09001 * 109.60717 * 64.26862 * 25 14 13 38 38 H 1.08996 * 109.60962 * 184.78152 * 25 14 13 39 39 H 1.08998 * 109.61534 * 244.54371 * 26 11 9 40 40 H 1.09004 * 109.60955 * 5.05402 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2078 1.1904 0.0000 4 7 3.5259 1.2003 -0.0061 5 6 4.2339 0.0872 -0.0070 6 17 5.9677 0.1748 -0.0145 7 6 3.6130 -1.1487 -0.0010 8 6 2.2164 -1.2051 0.0056 9 6 1.5071 -2.5057 0.0128 10 8 0.6755 -2.7489 -0.8391 11 7 1.7843 -3.4192 0.9642 12 6 1.1798 -4.7578 0.9146 13 6 0.4550 -5.0176 2.2411 14 7 1.3677 -4.6930 3.3463 15 6 1.6449 -5.6065 4.2977 16 8 1.2159 -6.7407 4.1957 17 6 2.4619 -5.2343 5.4538 18 1 2.9100 -4.2530 5.5049 19 6 2.6627 -6.1508 6.4935 20 7 2.1203 -7.3380 6.4319 21 14 3.7060 -5.6760 7.9685 22 1 3.7623 -6.8135 8.9216 23 1 5.0799 -5.3407 7.5156 24 1 3.1046 -4.4966 8.6412 25 6 1.9678 -3.3526 3.3989 26 6 2.6970 -3.0947 2.0694 27 1 -0.3633 0.0923 1.0235 28 1 -0.3633 0.8403 -0.5917 29 1 -0.3633 -0.9325 -0.4319 30 1 1.6682 2.1260 0.0005 31 1 4.1983 -2.0562 -0.0021 32 1 1.9592 -5.5062 0.7710 33 1 0.4662 -4.8067 0.0921 34 1 0.1666 -6.0670 2.3010 35 1 -0.4324 -4.3877 2.3025 36 1 2.2591 -7.9727 7.1522 37 1 1.1856 -2.6068 3.5409 38 1 2.6788 -3.3022 4.2236 39 1 3.5845 -3.7246 2.0080 40 1 2.9855 -2.0452 2.0096 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336783978.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:08 Heat of formation + Delta-G solvation = -48.133829 kcal Electronic energy + Delta-G solvation = -26919.415803 eV Core-core repulsion = 22952.606327 eV Total energy + Delta-G solvation = -3966.809476 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.16808 -40.73982 -39.62971 -37.78277 -37.59817 -35.01243 -34.63423 -34.49953 -33.41700 -32.25540 -29.28778 -28.50430 -27.81308 -25.95330 -24.80737 -23.71068 -23.29076 -21.72989 -20.39991 -19.22151 -18.33882 -18.02378 -17.77453 -17.26890 -16.72971 -16.41248 -16.26809 -16.19625 -15.85624 -15.76335 -15.63082 -15.01887 -14.80870 -14.58775 -14.38805 -14.10959 -13.70883 -13.50831 -13.26454 -13.15712 -12.91393 -12.87079 -12.69678 -12.56834 -12.46027 -12.36802 -12.34201 -12.02869 -12.01980 -11.55737 -11.00497 -10.91037 -10.64716 -10.19605 -9.91257 -9.80200 -9.05644 -8.28715 -6.83742 -0.43580 -0.26308 0.66986 1.34921 1.42816 1.45115 1.56518 1.67014 2.24425 2.40221 2.46668 2.75574 3.03077 3.39767 3.55184 3.58535 3.63797 3.85464 3.87924 3.89121 4.10070 4.21700 4.29328 4.39105 4.41108 4.51381 4.52673 4.62137 4.71234 4.72785 4.83154 4.94519 5.00195 5.15901 5.24116 5.34934 5.39812 5.69545 6.10299 6.11915 6.33426 6.50801 6.79765 6.88871 7.37536 8.45260 8.66879 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012605 B = 0.003418 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.887774 B = 8189.367704 C = 9551.730960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.084 4.084 3 C 0.127 3.873 4 N -0.478 5.478 5 C 0.157 3.843 6 Cl -0.022 7.022 7 C -0.119 4.119 8 C -0.081 4.081 9 C 0.568 3.432 10 O -0.555 6.555 11 N -0.593 5.593 12 C 0.112 3.888 13 C 0.109 3.891 14 N -0.644 5.644 15 C 0.543 3.457 16 O -0.629 6.629 17 C -0.566 4.566 18 H 0.099 0.901 19 C 0.031 3.969 20 N -0.822 5.822 21 Si 0.991 3.009 22 H -0.280 1.280 23 H -0.252 1.252 24 H -0.253 1.253 25 C 0.107 3.893 26 C 0.095 3.905 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.208 0.792 31 H 0.160 0.840 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.273 0.727 37 H 0.063 0.937 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.319 19.006 -10.908 22.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.087 4.087 3 C -0.031 4.031 4 N -0.188 5.188 5 C -0.006 4.006 6 Cl 0.006 6.994 7 C -0.140 4.140 8 C -0.092 4.092 9 C 0.356 3.644 10 O -0.434 6.434 11 N -0.324 5.324 12 C -0.012 4.012 13 C -0.015 4.015 14 N -0.381 5.381 15 C 0.349 3.651 16 O -0.516 6.516 17 C -0.602 4.602 18 H 0.117 0.883 19 C -0.184 4.184 20 N -0.452 5.452 21 Si 0.811 3.189 22 H -0.205 1.205 23 H -0.176 1.176 24 H -0.177 1.177 25 C -0.017 4.017 26 C -0.028 4.028 27 H 0.109 0.891 28 H 0.123 0.877 29 H 0.084 0.916 30 H 0.224 0.776 31 H 0.177 0.823 32 H 0.088 0.912 33 H 0.122 0.878 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.123 0.877 39 H 0.100 0.900 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.230 18.856 -11.340 22.239 hybrid contribution 0.068 -1.281 0.629 1.429 sum 3.297 17.575 -10.711 20.844 Atomic orbital electron populations 1.21013 0.87949 1.05079 1.04273 1.21314 0.99227 0.91958 0.96190 1.23137 0.87281 0.98760 0.93878 1.66965 1.09498 1.30643 1.11732 1.21523 0.88151 0.89676 1.01211 1.98424 1.05895 1.98594 1.96457 1.21998 0.93313 0.98803 0.99879 1.20073 0.93499 0.93772 1.01822 1.18327 0.81640 0.83412 0.81012 1.90754 1.34446 1.79018 1.39221 1.48050 1.46068 1.13221 1.25098 1.21936 0.98416 0.82594 0.98209 1.21535 0.92469 1.01302 0.86195 1.48030 1.49471 1.14137 1.26489 1.18673 0.80596 0.83204 0.82593 1.90557 1.59199 1.22488 1.79369 1.21461 1.33244 1.02225 1.03294 0.88341 1.26941 0.95493 0.93648 1.02314 1.70176 1.36632 1.06416 1.31966 0.85155 0.78975 0.78650 0.76119 1.20474 1.17552 1.17719 1.22074 0.98040 0.83823 0.97759 1.22508 0.92278 1.02870 0.85106 0.89124 0.87662 0.91593 0.77593 0.82257 0.91164 0.87815 0.91133 0.92301 0.91666 0.91890 0.87731 0.90011 0.87090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 9.74 71.24 0.69 -1.18 16 2 C -0.08 -1.46 5.93 -19.50 -0.12 -1.57 16 3 C 0.13 1.89 10.87 84.67 0.92 2.81 16 4 N -0.48 -9.25 10.31 -186.84 -1.93 -11.18 16 5 C 0.16 3.09 7.27 84.70 0.62 3.71 16 6 Cl -0.02 -0.41 29.10 -2.72 -0.08 -0.49 16 7 C -0.12 -2.28 7.66 22.66 0.17 -2.11 16 8 C -0.08 -1.71 4.62 -19.89 -0.09 -1.80 16 9 C 0.57 14.94 6.62 86.87 0.58 15.51 16 10 O -0.56 -17.54 14.62 -3.74 -0.05 -17.60 16 11 N -0.59 -16.02 2.95 -820.23 -2.42 -18.44 16 12 C 0.11 3.42 6.60 86.42 0.57 3.99 16 13 C 0.11 4.09 6.60 86.42 0.57 4.66 16 14 N -0.64 -27.11 2.94 -822.24 -2.42 -29.53 16 15 C 0.54 29.73 7.62 86.36 0.66 30.39 16 16 O -0.63 -40.57 14.45 -4.30 -0.06 -40.64 16 17 C -0.57 -29.75 8.86 24.83 0.22 -29.53 16 18 H 0.10 4.47 5.66 -2.91 -0.02 4.45 16 19 C 0.03 1.66 5.50 85.30 0.47 2.13 16 20 N -0.82 -48.71 11.84 21.83 0.26 -48.46 16 21 Si 0.99 38.64 29.56 68.60 2.03 40.67 16 22 H -0.28 -10.78 7.11 99.48 0.71 -10.07 16 23 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 24 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 25 C 0.11 3.37 6.51 86.56 0.56 3.94 16 26 C 0.10 2.37 5.88 86.56 0.51 2.88 16 27 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 28 H 0.10 0.98 8.13 -2.38 -0.02 0.96 16 29 H 0.07 1.39 5.70 -2.39 -0.01 1.38 16 30 H 0.21 1.47 8.06 -2.91 -0.02 1.45 16 31 H 0.16 2.73 7.84 -2.91 -0.02 2.71 16 32 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 33 H 0.10 3.03 6.99 -2.39 -0.02 3.02 16 34 H 0.07 3.04 6.99 -2.39 -0.02 3.02 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.27 14.80 8.29 -92.70 -0.77 14.03 16 37 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 38 H 0.10 3.37 5.34 -2.39 -0.01 3.36 16 39 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.11 2.18 5.32 -2.39 -0.01 2.17 16 Total: -1.00 -75.85 346.41 2.76 -73.09 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 1.10 Total: 18.75 kcal Atomic # 6 Polarization: 27.49 SS G_CDS: 6.33 Total: 33.82 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -6.50 Total: -107.60 kcal Atomic # 8 Polarization: -58.12 SS G_CDS: -0.12 Total: -58.23 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -0.08 Total: -0.49 kcal Total: -75.85 2.76 -73.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336783978.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.960 kcal (2) G-P(sol) polarization free energy of solvation -75.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds