Wall clock time and date at job start Tue Mar 31 2020 19:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00090 * 2 1 4 4 N 1.46498 * 109.47086 * 124.99557 * 3 2 1 5 5 C 1.46497 * 120.00406 * 274.81602 * 4 3 2 6 6 C 1.50702 * 109.47541 * 263.67613 * 5 4 3 7 7 H 1.08005 * 119.99680 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00302 * 179.97438 * 6 5 4 9 9 N 1.31506 * 120.00066 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99879 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47200 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46928 * 120.00448 * 10 8 6 13 13 H 1.48503 * 109.47267 * 240.00128 * 10 8 6 14 14 C 1.34777 * 119.99909 * 94.82093 * 4 3 2 15 15 O 1.21364 * 119.99795 * 354.60864 * 14 4 3 16 16 C 1.49346 * 120.00098 * 174.61571 * 14 4 3 17 17 O 1.21380 * 120.00337 * 0.02791 * 16 14 4 18 18 N 1.34786 * 120.00047 * 180.02562 * 16 14 4 19 19 C 1.39795 * 119.99775 * 185.10250 * 18 16 14 20 20 C 1.39254 * 120.49796 * 327.25110 * 19 18 16 21 21 C 1.38549 * 118.36895 * 179.71367 * 20 19 18 22 22 C 1.38233 * 119.26617 * 0.52693 * 21 20 19 23 23 C 1.50702 * 119.52329 * 179.73461 * 22 21 20 24 24 N 1.31896 * 120.94491 * 359.45954 * 22 21 20 25 25 C 1.31884 * 121.78783 * 0.27149 * 24 22 21 26 26 Cl 1.73592 * 119.69141 * 180.02562 * 25 24 22 27 27 H 1.07997 * 119.99813 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.00075 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.00380 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.46956 * 4.99818 * 3 2 1 31 31 H 1.09002 * 109.47223 * 244.99861 * 3 2 1 32 32 H 1.09003 * 109.47278 * 23.67063 * 5 4 3 33 33 H 1.08996 * 109.47436 * 143.67377 * 5 4 3 34 34 H 0.97008 * 120.00169 * 179.97438 * 9 8 6 35 35 H 0.96992 * 120.00015 * 5.09730 * 18 16 14 36 36 H 1.08005 * 120.81861 * 0.02562 * 20 19 18 37 37 H 1.08002 * 120.36531 * 180.25950 * 21 20 19 38 38 H 1.09009 * 109.46722 * 269.72630 * 23 22 21 39 39 H 1.08993 * 109.47541 * 29.73092 * 23 22 21 40 40 H 1.09002 * 109.46700 * 149.73256 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5294 1.7660 2.4514 6 6 2.8598 3.2234 2.6460 7 1 3.3655 3.7714 1.8647 8 6 2.5166 3.8572 3.8213 9 7 1.9003 3.1901 4.7724 10 14 2.9268 5.6635 4.0627 11 1 3.6150 6.1808 2.8527 12 1 1.6746 6.4301 4.2852 13 1 3.8165 5.8158 5.2419 14 6 4.2767 0.9573 0.9581 15 8 4.6380 0.5055 -0.1088 16 6 5.2537 1.0981 2.0789 17 8 4.8922 1.5494 3.1461 18 7 6.5369 0.7239 1.9053 19 6 7.4259 0.7551 2.9836 20 6 7.2949 1.7191 3.9800 21 6 8.1967 1.7056 5.0317 22 6 9.1960 0.7507 5.0529 23 6 10.1837 0.7345 6.1910 24 7 9.2942 -0.1496 4.0940 25 6 8.4542 -0.1764 3.0776 26 17 8.6335 -1.3863 1.8457 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 1.4507 1.6256 2.5214 33 1 3.0235 1.1753 3.2227 34 1 1.6591 3.6359 5.5995 35 1 6.8433 0.4330 1.0323 36 1 6.5066 2.4561 3.9366 37 1 8.1223 2.4357 5.8241 38 1 11.0400 1.3597 5.9379 39 1 9.7062 1.1196 7.0920 40 1 10.5193 -0.2877 6.3662 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337707130.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:00 Heat of formation + Delta-G solvation = 0.473956 kcal Electronic energy + Delta-G solvation = -26797.546669 eV Core-core repulsion = 22832.844985 eV Total energy + Delta-G solvation = -3964.701685 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.99074 -39.86718 -38.13777 -36.75321 -36.06043 -34.96831 -33.33978 -32.23841 -32.14920 -31.68853 -27.70808 -27.55611 -26.26987 -23.90057 -23.66899 -22.84158 -21.67878 -20.00519 -19.31813 -17.87682 -17.12717 -16.79407 -16.67244 -16.21733 -15.86761 -15.38576 -14.96302 -14.84888 -14.51008 -14.42371 -14.18397 -13.70513 -13.33166 -13.15736 -12.91024 -12.69503 -12.55821 -12.36490 -12.19560 -11.74064 -11.56090 -11.55667 -11.35279 -11.21815 -10.98289 -10.91491 -10.71858 -10.55511 -10.10085 -9.84452 -9.76806 -9.51509 -9.24156 -8.77008 -8.38303 -8.19321 -7.95891 -6.10453 -4.13077 0.79103 1.15155 1.74121 1.99112 2.35651 2.80879 3.22906 3.31325 3.34367 3.51015 3.78356 3.98826 4.31678 4.37369 4.69215 4.78917 4.84046 5.11353 5.23756 5.25485 5.26121 5.42243 5.46349 5.52515 5.75776 5.76886 5.91328 6.04066 6.12087 6.18791 6.23998 6.52813 6.65284 6.82291 6.94950 7.17913 7.30131 7.39179 7.66696 7.77699 7.97015 8.09614 8.17495 8.52403 8.87212 9.49544 10.98361 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009740 B = 0.004570 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.990961 B = 6125.524202 C = 8477.386908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.160 4.160 3 C 0.140 3.860 4 N -0.554 5.554 5 C 0.229 3.771 6 C -0.515 4.515 7 H 0.055 0.945 8 C 0.070 3.930 9 N -0.888 5.888 10 Si 0.891 3.109 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.509 3.491 15 O -0.555 6.555 16 C 0.491 3.509 17 O -0.426 6.426 18 N -0.655 5.655 19 C 0.125 3.875 20 C -0.067 4.067 21 C -0.143 4.143 22 C 0.117 3.883 23 C -0.098 4.098 24 N -0.461 5.461 25 C 0.147 3.853 26 Cl -0.031 7.031 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.035 0.965 33 H 0.064 0.936 34 H 0.262 0.738 35 H 0.420 0.580 36 H 0.171 0.829 37 H 0.146 0.854 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.803 -4.946 -2.240 11.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.179 4.179 3 C 0.018 3.982 4 N -0.283 5.283 5 C 0.110 3.890 6 C -0.554 4.554 7 H 0.073 0.927 8 C -0.133 4.133 9 N -0.527 5.527 10 Si 0.719 3.281 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.291 3.709 15 O -0.437 6.437 16 C 0.273 3.727 17 O -0.293 6.293 18 N -0.304 5.304 19 C 0.025 3.975 20 C -0.094 4.094 21 C -0.164 4.164 22 C -0.022 4.022 23 C -0.156 4.156 24 N -0.173 5.173 25 C -0.021 4.021 26 Cl -0.002 7.002 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.124 0.876 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.259 0.741 36 H 0.188 0.812 37 H 0.164 0.836 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.174 -5.524 -1.906 11.733 hybrid contribution -0.374 1.311 -0.312 1.399 sum 9.800 -4.213 -2.218 10.895 Atomic orbital electron populations 1.23805 0.95719 1.01785 1.00923 1.23290 0.96127 0.98974 0.99529 1.20623 0.92184 0.95445 0.89977 1.48266 1.07038 1.59613 1.13400 1.19960 0.96007 0.96351 0.76656 1.21227 1.38554 0.94176 1.01451 0.92682 1.24794 0.94958 0.97952 0.95553 1.69925 1.40199 1.36206 1.06365 0.86558 0.78156 0.85223 0.78153 1.19909 1.21001 1.20900 1.19621 0.83872 0.80127 0.87277 1.90675 1.78920 1.46592 1.27464 1.20510 0.82372 0.79839 0.89989 1.90975 1.76319 1.36114 1.25872 1.43220 1.08667 1.66589 1.11918 1.18271 0.91973 0.95186 0.92040 1.22061 0.98844 0.96440 0.92090 1.22033 0.94773 1.00072 0.99510 1.21099 0.95934 0.91008 0.94126 1.20679 0.97073 1.03784 0.94049 1.66732 1.25519 1.24092 1.00968 1.21351 0.95514 0.92076 0.93121 1.98397 1.97297 1.54470 1.50080 0.88664 0.88293 0.87584 0.89274 0.89509 0.94695 0.91804 0.92833 0.74128 0.81170 0.83633 0.90375 0.90367 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 14.32 29.02 0.42 -2.08 16 2 C -0.16 -2.48 9.84 -36.02 -0.35 -2.83 16 3 C 0.14 2.42 5.83 -5.19 -0.03 2.39 16 4 N -0.55 -11.32 2.46 -176.98 -0.44 -11.76 16 5 C 0.23 5.46 4.78 -5.19 -0.02 5.43 16 6 C -0.52 -13.32 7.78 -34.44 -0.27 -13.59 16 7 H 0.05 1.44 7.81 -52.48 -0.41 1.03 16 8 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 9 N -0.89 -24.76 13.29 55.43 0.74 -24.02 16 10 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 C 0.51 10.22 7.67 -11.63 -0.09 10.13 16 15 O -0.56 -11.11 16.04 5.48 0.09 -11.02 16 16 C 0.49 9.59 7.59 -11.63 -0.09 9.50 16 17 O -0.43 -9.43 9.45 5.47 0.05 -9.38 16 18 N -0.65 -10.78 5.07 -10.17 -0.05 -10.84 16 19 C 0.12 1.99 6.36 -83.54 -0.53 1.46 16 20 C -0.07 -1.05 8.83 -39.09 -0.35 -1.40 16 21 C -0.14 -1.87 9.73 -39.47 -0.38 -2.25 16 22 C 0.12 1.49 6.78 -82.57 -0.56 0.93 16 23 C -0.10 -0.87 10.17 36.01 0.37 -0.50 16 24 N -0.46 -6.75 10.24 -6.45 -0.07 -6.81 16 25 C 0.15 2.22 7.30 -17.22 -0.13 2.09 16 26 Cl -0.03 -0.42 28.09 -51.86 -1.46 -1.87 16 27 H 0.10 1.12 8.06 -52.49 -0.42 0.69 16 28 H 0.10 1.28 7.84 -52.49 -0.41 0.87 16 29 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 30 H 0.09 1.50 7.76 -51.93 -0.40 1.10 16 31 H 0.09 1.44 7.36 -51.93 -0.38 1.06 16 32 H 0.04 0.87 8.02 -51.93 -0.42 0.46 16 33 H 0.06 1.66 5.85 -51.93 -0.30 1.36 16 34 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.42 6.31 7.50 -40.82 -0.31 6.00 16 36 H 0.17 3.03 6.13 -52.48 -0.32 2.71 16 37 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 39 H 0.08 0.55 8.07 -51.93 -0.42 0.14 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 363.04 15.07 5.47 5.47 Total: -1.00 -29.56 363.04 -7.42 -36.98 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -4.62 Total: 6.62 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: -2.12 Total: 11.04 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.18 Total: -53.43 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: 0.14 Total: -20.41 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.46 Total: -1.87 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.56 -7.42 -36.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337707130.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.458 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds