Wall clock time and date at job start Tue Mar 31 2020 19:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00090 * 2 1 4 4 N 1.46498 * 109.47086 * 124.99557 * 3 2 1 5 5 C 1.46497 * 120.00406 * 274.81602 * 4 3 2 6 6 C 1.50702 * 109.47541 * 263.67613 * 5 4 3 7 7 H 1.08005 * 119.99680 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00302 * 179.97438 * 6 5 4 9 9 N 1.31506 * 120.00066 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99879 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47200 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46928 * 120.00448 * 10 8 6 13 13 H 1.48503 * 109.47267 * 240.00128 * 10 8 6 14 14 C 1.34777 * 119.99909 * 94.82093 * 4 3 2 15 15 O 1.21364 * 119.99795 * 354.60864 * 14 4 3 16 16 C 1.49346 * 120.00098 * 174.61571 * 14 4 3 17 17 O 1.21380 * 120.00337 * 0.02791 * 16 14 4 18 18 N 1.34786 * 120.00047 * 180.02562 * 16 14 4 19 19 C 1.39795 * 119.99775 * 185.10250 * 18 16 14 20 20 C 1.39254 * 120.49796 * 327.25110 * 19 18 16 21 21 C 1.38549 * 118.36895 * 179.71367 * 20 19 18 22 22 C 1.38233 * 119.26617 * 0.52693 * 21 20 19 23 23 C 1.50702 * 119.52329 * 179.73461 * 22 21 20 24 24 N 1.31896 * 120.94491 * 359.45954 * 22 21 20 25 25 C 1.31884 * 121.78783 * 0.27149 * 24 22 21 26 26 Cl 1.73592 * 119.69141 * 180.02562 * 25 24 22 27 27 H 1.07997 * 119.99813 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.00075 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.00380 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.46956 * 4.99818 * 3 2 1 31 31 H 1.09002 * 109.47223 * 244.99861 * 3 2 1 32 32 H 1.09003 * 109.47278 * 23.67063 * 5 4 3 33 33 H 1.08996 * 109.47436 * 143.67377 * 5 4 3 34 34 H 0.97008 * 120.00169 * 179.97438 * 9 8 6 35 35 H 0.96992 * 120.00015 * 5.09730 * 18 16 14 36 36 H 1.08005 * 120.81861 * 0.02562 * 20 19 18 37 37 H 1.08002 * 120.36531 * 180.25950 * 21 20 19 38 38 H 1.09009 * 109.46722 * 269.72630 * 23 22 21 39 39 H 1.08993 * 109.47541 * 29.73092 * 23 22 21 40 40 H 1.09002 * 109.46700 * 149.73256 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5294 1.7660 2.4514 6 6 2.8598 3.2234 2.6460 7 1 3.3655 3.7714 1.8647 8 6 2.5166 3.8572 3.8213 9 7 1.9003 3.1901 4.7724 10 14 2.9268 5.6635 4.0627 11 1 3.6150 6.1808 2.8527 12 1 1.6746 6.4301 4.2852 13 1 3.8165 5.8158 5.2419 14 6 4.2767 0.9573 0.9581 15 8 4.6380 0.5055 -0.1088 16 6 5.2537 1.0981 2.0789 17 8 4.8922 1.5494 3.1461 18 7 6.5369 0.7239 1.9053 19 6 7.4259 0.7551 2.9836 20 6 7.2949 1.7191 3.9800 21 6 8.1967 1.7056 5.0317 22 6 9.1960 0.7507 5.0529 23 6 10.1837 0.7345 6.1910 24 7 9.2942 -0.1496 4.0940 25 6 8.4542 -0.1764 3.0776 26 17 8.6335 -1.3863 1.8457 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 1.4507 1.6256 2.5214 33 1 3.0235 1.1753 3.2227 34 1 1.6591 3.6359 5.5995 35 1 6.8433 0.4330 1.0323 36 1 6.5066 2.4561 3.9366 37 1 8.1223 2.4357 5.8241 38 1 11.0400 1.3597 5.9379 39 1 9.7062 1.1196 7.0920 40 1 10.5193 -0.2877 6.3662 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337707130.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:59 Heat of formation + Delta-G solvation = -17.192544 kcal Electronic energy + Delta-G solvation = -26798.312746 eV Core-core repulsion = 22832.844985 eV Total energy + Delta-G solvation = -3965.467762 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.34964 -41.22375 -39.62671 -37.89259 -37.60621 -36.31648 -35.02359 -33.83792 -33.32472 -32.79678 -29.44838 -28.81286 -27.63470 -25.46894 -24.86713 -24.42596 -22.95156 -21.34269 -20.65890 -19.32691 -18.60571 -18.50969 -18.03221 -17.59424 -17.27201 -16.95026 -16.43509 -16.21840 -16.06691 -15.72551 -15.39261 -15.07856 -14.69548 -14.38220 -14.29057 -14.09865 -13.85634 -13.62714 -13.43145 -13.04673 -13.01512 -12.85398 -12.76190 -12.63223 -12.44166 -12.37761 -12.28773 -11.97810 -11.90935 -11.64457 -11.03059 -10.73851 -10.59206 -10.44798 -10.08463 -9.69787 -9.35929 -8.12853 -6.21454 -0.37863 -0.02582 0.46946 0.61375 1.05827 1.39781 1.42363 1.51273 1.52172 2.11050 2.40099 2.49963 2.56673 3.21247 3.26416 3.30146 3.57292 3.79159 3.93161 4.02116 4.14623 4.22932 4.45099 4.64347 4.76021 4.80349 4.81961 4.83722 4.91654 5.02124 5.04164 5.19798 5.34544 5.43329 5.53425 5.66971 5.75486 5.81268 5.90864 6.10962 6.25425 6.56355 6.63971 6.81275 6.98093 7.44639 8.95782 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009740 B = 0.004570 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.990961 B = 6125.524202 C = 8477.386908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.185 4.185 3 C 0.138 3.862 4 N -0.558 5.558 5 C 0.250 3.750 6 C -0.516 4.516 7 H 0.047 0.953 8 C 0.025 3.975 9 N -0.921 5.921 10 Si 0.949 3.051 11 H -0.272 1.272 12 H -0.278 1.278 13 H -0.280 1.280 14 C 0.506 3.494 15 O -0.555 6.555 16 C 0.493 3.507 17 O -0.459 6.459 18 N -0.641 5.641 19 C 0.102 3.898 20 C -0.081 4.081 21 C -0.138 4.138 22 C 0.123 3.877 23 C -0.097 4.097 24 N -0.473 5.473 25 C 0.144 3.856 26 Cl -0.021 7.021 27 H 0.118 0.882 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.021 0.979 33 H 0.041 0.959 34 H 0.263 0.737 35 H 0.426 0.574 36 H 0.147 0.853 37 H 0.175 0.825 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.796 -4.679 -1.840 11.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.204 4.204 3 C 0.016 3.984 4 N -0.288 5.288 5 C 0.130 3.870 6 C -0.555 4.555 7 H 0.065 0.935 8 C -0.174 4.174 9 N -0.561 5.561 10 Si 0.775 3.225 11 H -0.197 1.197 12 H -0.204 1.204 13 H -0.206 1.206 14 C 0.288 3.712 15 O -0.436 6.436 16 C 0.274 3.726 17 O -0.328 6.328 18 N -0.290 5.290 19 C 0.004 3.996 20 C -0.109 4.109 21 C -0.158 4.158 22 C -0.015 4.015 23 C -0.154 4.154 24 N -0.186 5.186 25 C -0.023 4.023 26 Cl 0.007 6.993 27 H 0.137 0.863 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.039 0.961 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.266 0.734 36 H 0.165 0.835 37 H 0.192 0.808 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.196 -5.276 -1.547 12.473 hybrid contribution -0.619 1.167 -0.441 1.392 sum 10.577 -4.109 -1.988 11.520 Atomic orbital electron populations 1.24064 0.95031 1.03236 0.97553 1.23145 0.96793 0.97850 1.02581 1.20783 0.91941 0.96737 0.88902 1.48227 1.07767 1.59669 1.13130 1.19456 0.94587 0.95166 0.77832 1.21364 1.37858 0.95055 1.01192 0.93489 1.25483 0.94921 1.01687 0.95343 1.70027 1.41420 1.37774 1.06835 0.85645 0.78045 0.80745 0.78019 1.19665 1.20376 1.20553 1.19767 0.83930 0.79975 0.87491 1.90662 1.78895 1.46617 1.27471 1.20465 0.83130 0.79608 0.89356 1.90968 1.77017 1.38044 1.26810 1.43018 1.07816 1.65643 1.12544 1.18355 0.92643 0.96348 0.92281 1.21988 0.99196 0.96357 0.93316 1.22347 0.93807 1.00571 0.99115 1.21821 0.95928 0.89576 0.94208 1.20836 0.96778 1.04598 0.93148 1.66882 1.25508 1.24871 1.01295 1.21410 0.95222 0.92051 0.93579 1.98394 1.97233 1.53942 1.49699 0.86344 0.87615 0.87884 0.89129 0.89063 0.96105 0.94108 0.92771 0.73432 0.83510 0.80803 0.88446 0.88128 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.11 14.32 67.78 0.97 -3.14 16 2 C -0.18 -5.62 9.84 25.65 0.25 -5.37 16 3 C 0.14 4.77 5.83 85.63 0.50 5.27 16 4 N -0.56 -23.33 2.46 -832.21 -2.05 -25.38 16 5 C 0.25 12.27 4.78 85.63 0.41 12.67 16 6 C -0.52 -27.17 7.78 25.60 0.20 -26.97 16 7 H 0.05 2.50 7.81 -2.91 -0.02 2.48 16 8 C 0.03 1.35 5.46 84.65 0.46 1.81 16 9 N -0.92 -52.07 13.29 21.44 0.28 -51.79 16 10 Si 0.95 42.45 29.54 68.60 2.03 44.47 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 13 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 14 C 0.51 20.74 7.67 87.24 0.67 21.41 16 15 O -0.56 -22.32 16.04 -3.29 -0.05 -22.37 16 16 C 0.49 19.84 7.59 87.24 0.66 20.50 16 17 O -0.46 -21.16 9.45 -3.34 -0.03 -21.19 16 18 N -0.64 -21.56 5.07 -304.42 -1.54 -23.11 16 19 C 0.10 3.30 6.36 38.31 0.24 3.54 16 20 C -0.08 -2.58 8.83 22.59 0.20 -2.38 16 21 C -0.14 -3.40 9.73 22.34 0.22 -3.19 16 22 C 0.12 2.88 6.78 42.55 0.29 3.16 16 23 C -0.10 -1.38 10.17 71.24 0.72 -0.65 16 24 N -0.47 -13.20 10.24 -174.33 -1.79 -14.98 16 25 C 0.14 4.28 7.30 84.88 0.62 4.90 16 26 Cl -0.02 -0.56 28.09 -2.72 -0.08 -0.64 16 27 H 0.12 2.48 8.06 -2.91 -0.02 2.45 16 28 H 0.11 2.56 7.84 -2.91 -0.02 2.53 16 29 H 0.10 3.19 8.06 -2.91 -0.02 3.16 16 30 H 0.09 3.05 7.76 -2.39 -0.02 3.03 16 31 H 0.09 3.03 7.36 -2.39 -0.02 3.01 16 32 H 0.02 1.08 8.02 -2.39 -0.02 1.06 16 33 H 0.04 2.22 5.85 -2.39 -0.01 2.21 16 34 H 0.26 14.12 8.31 -92.70 -0.77 13.35 16 35 H 0.43 12.95 7.50 -92.71 -0.70 12.25 16 36 H 0.15 5.44 6.13 -2.91 -0.02 5.42 16 37 H 0.17 3.18 8.06 -2.91 -0.02 3.16 16 38 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.10 1.03 8.07 -2.39 -0.02 1.01 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -63.87 363.04 3.59 -60.29 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.39 Total: 23.12 kcal Atomic # 6 Polarization: 25.16 SS G_CDS: 6.42 Total: 31.57 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -5.09 Total: -115.26 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -0.08 Total: -43.56 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -0.08 Total: -0.64 kcal Total: -63.87 3.59 -60.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337707130.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.095 kcal (2) G-P(sol) polarization free energy of solvation -63.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds