Wall clock time and date at job start Tue Mar 31 2020 19:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30855 * 125.88418 * 2 1 4 4 N 1.40078 * 108.30318 * 179.76737 * 3 2 1 5 5 C 1.46498 * 126.01627 * 180.29769 * 4 3 2 6 6 C 1.50695 * 109.47310 * 270.14418 * 5 4 3 7 7 H 1.08000 * 120.00327 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99993 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00024 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00076 * 359.97438 * 8 6 5 11 11 H 1.48491 * 109.47117 * 90.00164 * 10 8 6 12 12 H 1.48504 * 109.47190 * 210.00406 * 10 8 6 13 13 H 1.48497 * 109.46898 * 330.00134 * 10 8 6 14 14 C 1.35236 * 107.96333 * 0.42276 * 4 3 2 15 15 C 1.50703 * 126.16413 * 179.84839 * 14 4 3 16 16 C 1.35650 * 107.67065 * 359.58213 * 14 4 3 17 17 O 1.36173 * 126.08235 * 180.30034 * 16 14 4 18 18 C 1.34642 * 117.00386 * 90.00293 * 17 16 14 19 19 O 1.21465 * 119.99609 * 359.97438 * 18 17 16 20 20 C 1.47884 * 120.00241 * 180.02562 * 18 17 16 21 21 C 1.40032 * 120.93198 * 359.71770 * 20 18 17 22 22 C 1.37925 * 119.08797 * 179.75512 * 21 20 18 23 23 N 1.31935 * 121.01920 * 0.53071 * 22 21 20 24 24 C 1.31857 * 122.07436 * 359.72447 * 23 22 21 25 25 F 1.35098 * 119.60719 * 180.02562 * 24 23 22 26 26 C 1.38887 * 120.78468 * 0.02562 * 24 23 22 27 27 F 1.35099 * 120.54993 * 180.02562 * 26 24 23 28 28 H 1.09007 * 109.46927 * 269.97827 * 1 2 3 29 29 H 1.08997 * 109.47264 * 29.97097 * 1 2 3 30 30 H 1.08995 * 109.47100 * 149.97584 * 1 2 3 31 31 H 1.09001 * 109.47411 * 30.14482 * 5 4 3 32 32 H 1.08998 * 109.46739 * 150.14070 * 5 4 3 33 33 H 0.96999 * 120.00028 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.47152 * 269.71183 * 15 14 4 35 35 H 1.09001 * 109.46980 * 149.71284 * 15 14 4 36 36 H 1.09004 * 109.47113 * 29.71265 * 15 14 4 37 37 H 1.08004 * 120.45815 * 0.02562 * 21 20 18 38 38 H 1.08001 * 119.48883 * 180.25255 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2740 1.0602 0.0000 4 7 3.6093 0.6371 0.0054 5 6 4.7884 1.5065 0.0134 6 6 5.1975 1.8112 -1.4046 7 1 4.6358 1.3981 -2.2294 8 6 6.2898 2.6164 -1.6492 9 7 6.6471 2.8819 -2.8867 10 14 7.2619 3.3302 -0.2227 11 1 8.3501 2.3923 0.1532 12 1 7.8490 4.6332 -0.6266 13 1 6.3596 3.5328 0.9391 14 6 3.6184 -0.7152 -0.0008 15 6 4.8410 -1.5964 -0.0014 16 6 2.3287 -1.1356 -0.0005 17 8 1.9073 -2.4305 0.0001 18 6 1.7182 -3.0114 1.1999 19 8 1.9235 -2.3820 2.2184 20 6 1.2617 -4.4158 1.2779 21 6 1.0146 -5.1579 0.1164 22 6 0.5949 -6.4665 0.2333 23 7 0.4150 -7.0196 1.4176 24 6 0.6297 -6.3593 2.5386 25 9 0.4300 -6.9749 3.7245 26 6 1.0587 -5.0386 2.5147 27 9 1.2778 -4.3668 3.6661 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8897 -0.5142 31 1 4.5510 2.4361 0.5307 32 1 5.6072 1.0034 0.5277 33 1 7.4157 3.4481 -3.0587 34 1 5.1357 -1.8082 -1.0292 35 1 4.6154 -2.5311 0.5119 36 1 5.6562 -1.0871 0.5127 37 1 1.1549 -4.7130 -0.8577 38 1 0.4064 -7.0461 -0.6583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337748731.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:27 Heat of formation + Delta-G solvation = -39.955273 kcal Electronic energy + Delta-G solvation = -28438.019670 eV Core-core repulsion = 23919.768162 eV Total energy + Delta-G solvation = -4518.251508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.00212 -49.09440 -41.56985 -40.71405 -39.69809 -36.81329 -34.18839 -33.50002 -32.69019 -31.30933 -31.10552 -29.52295 -27.25949 -26.35007 -25.73192 -24.22439 -22.94014 -21.98342 -19.98669 -19.39591 -19.02915 -18.48149 -18.04050 -17.33099 -17.24166 -17.23214 -16.83543 -15.98184 -15.56538 -15.37579 -15.14013 -14.98341 -14.81429 -14.25940 -13.90674 -13.69192 -13.61958 -13.47195 -13.10771 -13.06984 -12.99681 -12.63144 -12.35198 -12.23153 -12.12970 -11.92682 -11.26170 -11.21506 -11.05767 -10.86108 -10.62869 -10.47093 -10.32051 -9.96074 -9.80460 -9.52310 -8.88777 -8.57566 -7.94288 -6.37008 -4.41863 -0.26074 0.06857 1.87798 2.10880 2.39494 2.65046 2.88730 2.99982 3.07834 3.14553 3.16684 3.23709 3.36451 3.81872 3.90072 4.12357 4.22332 4.65457 4.77722 4.89438 4.96601 5.04872 5.12034 5.18558 5.33131 5.55529 5.74971 5.75863 5.79044 5.88812 5.92859 6.09436 6.16849 6.28588 6.39476 6.58112 6.78851 6.92995 7.13835 7.44634 7.77379 8.15094 8.19495 8.65961 9.16979 10.75092 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.021222 B = 0.002692 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.090903 B =10398.261538 C =10564.038037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.068 3.932 3 N -0.274 5.274 4 N -0.310 5.310 5 C 0.230 3.770 6 C -0.546 4.546 7 H 0.083 0.917 8 C 0.082 3.918 9 N -0.882 5.882 10 Si 0.871 3.129 11 H -0.270 1.270 12 H -0.278 1.278 13 H -0.263 1.263 14 C 0.115 3.885 15 C -0.088 4.088 16 C -0.108 4.108 17 O -0.237 6.237 18 C 0.483 3.517 19 O -0.462 6.462 20 C -0.079 4.079 21 C -0.097 4.097 22 C 0.120 3.880 23 N -0.466 5.466 24 C 0.279 3.721 25 F -0.095 7.095 26 C 0.089 3.911 27 F -0.093 7.093 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.270 0.730 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.174 0.826 38 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.071 -18.516 6.103 22.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.099 4.099 3 N -0.097 5.097 4 N -0.090 5.090 5 C 0.111 3.889 6 C -0.584 4.584 7 H 0.101 0.899 8 C -0.123 4.123 9 N -0.519 5.519 10 Si 0.697 3.303 11 H -0.195 1.195 12 H -0.203 1.203 13 H -0.187 1.187 14 C -0.018 4.018 15 C -0.146 4.146 16 C -0.162 4.162 17 O -0.148 6.148 18 C 0.324 3.676 19 O -0.346 6.346 20 C -0.089 4.089 21 C -0.117 4.117 22 C -0.036 4.036 23 N -0.180 5.180 24 C 0.124 3.876 25 F -0.074 7.074 26 C 0.065 3.935 27 F -0.071 7.071 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.192 0.808 38 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -10.956 -17.626 6.458 21.735 hybrid contribution 0.953 0.495 1.066 1.513 sum -10.003 -17.131 7.524 21.217 Atomic orbital electron populations 1.20108 0.86916 1.03236 1.02531 1.22312 0.96991 0.89668 1.00882 1.77435 0.86897 1.21455 1.23948 1.48753 1.05926 1.03492 1.50783 1.20150 0.78871 0.89669 1.00191 1.21106 1.14407 1.32893 0.90039 0.89929 1.24783 0.96489 0.95136 0.95879 1.69860 1.26624 1.36533 1.18860 0.86925 0.80922 0.79691 0.82793 1.19509 1.20288 1.18734 1.20907 0.95927 0.86281 0.98721 1.20412 0.93198 0.96973 1.04040 1.17524 0.90641 0.81359 1.26646 1.84736 1.76511 1.24471 1.29106 1.21314 0.76064 0.86207 0.83969 1.90932 1.44296 1.63535 1.35854 1.19623 1.03416 0.93378 0.92488 1.22673 0.94977 0.94452 0.99568 1.22722 0.94513 0.92499 0.93834 1.67005 1.14798 1.38367 0.97865 1.17924 1.00397 0.86470 0.82834 1.91706 1.92147 1.82743 1.40765 1.18437 1.01995 0.90053 0.83015 1.91682 1.91199 1.79091 1.45082 0.91008 0.90476 0.90814 0.92564 0.93455 0.91936 0.89062 0.91128 0.90285 0.80806 0.79514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.44 36.01 0.38 -0.59 16 2 C 0.07 1.28 7.23 -82.28 -0.59 0.68 16 3 N -0.27 -6.05 12.57 33.73 0.42 -5.62 16 4 N -0.31 -6.92 3.60 -58.16 -0.21 -7.13 16 5 C 0.23 5.33 5.07 -5.20 -0.03 5.30 16 6 C -0.55 -14.71 9.94 -34.44 -0.34 -15.05 16 7 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 8 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 9 N -0.88 -25.41 13.96 55.43 0.77 -24.64 16 10 Si 0.87 19.55 27.47 -169.99 -4.67 14.88 16 11 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.26 -5.67 6.54 56.52 0.37 -5.30 16 14 C 0.12 2.25 6.95 -82.02 -0.57 1.68 16 15 C -0.09 -1.39 10.09 36.01 0.36 -1.02 16 16 C -0.11 -1.98 5.35 -39.78 -0.21 -2.19 16 17 O -0.24 -3.50 9.48 -25.39 -0.24 -3.74 16 18 C 0.48 6.84 7.86 34.68 0.27 7.12 16 19 O -0.46 -8.21 15.25 -19.24 -0.29 -8.51 16 20 C -0.08 -0.83 5.91 -104.63 -0.62 -1.45 16 21 C -0.10 -0.64 9.70 -39.02 -0.38 -1.01 16 22 C 0.12 0.68 11.16 -17.62 -0.20 0.48 16 23 N -0.47 -4.08 10.34 -13.59 -0.14 -4.22 16 24 C 0.28 2.82 8.42 -17.30 -0.15 2.68 16 25 F -0.09 -1.01 17.21 2.25 0.04 -0.97 16 26 C 0.09 0.99 7.34 -38.70 -0.28 0.70 16 27 F -0.09 -1.24 15.63 2.25 0.04 -1.21 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.32 7.20 -51.93 -0.37 0.95 16 32 H 0.05 1.01 6.48 -51.93 -0.34 0.67 16 33 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.22 7.08 -51.93 -0.37 0.85 16 37 H 0.17 0.78 7.71 -52.48 -0.40 0.38 16 38 H 0.19 0.31 8.06 -52.49 -0.42 -0.11 16 LS Contribution 350.82 15.07 5.29 5.29 Total: -1.00 -33.23 350.82 -5.06 -38.29 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -3.61 Total: -1.87 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -2.46 Total: -0.55 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.85 Total: -41.61 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -0.53 Total: -12.24 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.07 Total: -2.18 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.67 Total: 14.88 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.23 -5.06 -38.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337748731.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.660 kcal (2) G-P(sol) polarization free energy of solvation -33.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds