Wall clock time and date at job start Tue Mar 31 2020 19:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30855 * 125.88418 * 2 1 4 4 N 1.40078 * 108.30318 * 179.76737 * 3 2 1 5 5 C 1.46498 * 126.01627 * 180.29769 * 4 3 2 6 6 C 1.50695 * 109.47310 * 270.14418 * 5 4 3 7 7 H 1.08000 * 120.00327 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99993 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00024 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00076 * 359.97438 * 8 6 5 11 11 H 1.48491 * 109.47117 * 90.00164 * 10 8 6 12 12 H 1.48504 * 109.47190 * 210.00406 * 10 8 6 13 13 H 1.48497 * 109.46898 * 330.00134 * 10 8 6 14 14 C 1.35236 * 107.96333 * 0.42276 * 4 3 2 15 15 C 1.50703 * 126.16413 * 179.84839 * 14 4 3 16 16 C 1.35650 * 107.67065 * 359.58213 * 14 4 3 17 17 O 1.36173 * 126.08235 * 180.30034 * 16 14 4 18 18 C 1.34642 * 117.00386 * 90.00293 * 17 16 14 19 19 O 1.21465 * 119.99609 * 359.97438 * 18 17 16 20 20 C 1.47884 * 120.00241 * 180.02562 * 18 17 16 21 21 C 1.40032 * 120.93198 * 359.71770 * 20 18 17 22 22 C 1.37925 * 119.08797 * 179.75512 * 21 20 18 23 23 N 1.31935 * 121.01920 * 0.53071 * 22 21 20 24 24 C 1.31857 * 122.07436 * 359.72447 * 23 22 21 25 25 F 1.35098 * 119.60719 * 180.02562 * 24 23 22 26 26 C 1.38887 * 120.78468 * 0.02562 * 24 23 22 27 27 F 1.35099 * 120.54993 * 180.02562 * 26 24 23 28 28 H 1.09007 * 109.46927 * 269.97827 * 1 2 3 29 29 H 1.08997 * 109.47264 * 29.97097 * 1 2 3 30 30 H 1.08995 * 109.47100 * 149.97584 * 1 2 3 31 31 H 1.09001 * 109.47411 * 30.14482 * 5 4 3 32 32 H 1.08998 * 109.46739 * 150.14070 * 5 4 3 33 33 H 0.96999 * 120.00028 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.47152 * 269.71183 * 15 14 4 35 35 H 1.09001 * 109.46980 * 149.71284 * 15 14 4 36 36 H 1.09004 * 109.47113 * 29.71265 * 15 14 4 37 37 H 1.08004 * 120.45815 * 0.02562 * 21 20 18 38 38 H 1.08001 * 119.48883 * 180.25255 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2740 1.0602 0.0000 4 7 3.6093 0.6371 0.0054 5 6 4.7884 1.5065 0.0134 6 6 5.1975 1.8112 -1.4046 7 1 4.6358 1.3981 -2.2294 8 6 6.2898 2.6164 -1.6492 9 7 6.6471 2.8819 -2.8867 10 14 7.2619 3.3302 -0.2227 11 1 8.3501 2.3923 0.1532 12 1 7.8490 4.6332 -0.6266 13 1 6.3596 3.5328 0.9391 14 6 3.6184 -0.7152 -0.0008 15 6 4.8410 -1.5964 -0.0014 16 6 2.3287 -1.1356 -0.0005 17 8 1.9073 -2.4305 0.0001 18 6 1.7182 -3.0114 1.1999 19 8 1.9235 -2.3820 2.2184 20 6 1.2617 -4.4158 1.2779 21 6 1.0146 -5.1579 0.1164 22 6 0.5949 -6.4665 0.2333 23 7 0.4150 -7.0196 1.4176 24 6 0.6297 -6.3593 2.5386 25 9 0.4300 -6.9749 3.7245 26 6 1.0587 -5.0386 2.5147 27 9 1.2778 -4.3668 3.6661 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8897 -0.5142 31 1 4.5510 2.4361 0.5307 32 1 5.6072 1.0034 0.5277 33 1 7.4157 3.4481 -3.0587 34 1 5.1357 -1.8082 -1.0292 35 1 4.6154 -2.5311 0.5119 36 1 5.6562 -1.0871 0.5127 37 1 1.1549 -4.7130 -0.8577 38 1 0.4064 -7.0461 -0.6583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337748731.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:26 Heat of formation + Delta-G solvation = -61.376563 kcal Electronic energy + Delta-G solvation = -28438.948566 eV Core-core repulsion = 23919.768162 eV Total energy + Delta-G solvation = -4519.180405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.81960 -49.92559 -42.90135 -41.69832 -40.76425 -38.06964 -35.91160 -34.46740 -34.29435 -32.65261 -31.94956 -31.02349 -28.52744 -27.95469 -26.78807 -24.94143 -24.43809 -23.28847 -21.27570 -20.87768 -20.00755 -19.33275 -19.26165 -18.99148 -18.38439 -18.05873 -17.85439 -17.30128 -16.78056 -16.45159 -16.31939 -16.03344 -15.79313 -15.68120 -15.13046 -14.95870 -14.66892 -14.47136 -14.33755 -14.27267 -14.24166 -13.86448 -13.73859 -13.62255 -13.41307 -13.23518 -12.94701 -12.65764 -12.51804 -12.26944 -12.05141 -11.85379 -11.45205 -11.37675 -11.19703 -10.92871 -10.19437 -10.14404 -9.45286 -8.44452 -6.56167 -1.03943 -0.58448 0.59107 0.97958 1.12118 1.32193 1.33505 1.43362 1.54774 1.75843 2.04103 2.18969 2.22813 2.67250 2.87141 3.05398 3.25309 3.28734 3.53006 3.67367 3.92782 4.03887 4.14935 4.28036 4.37016 4.50917 4.52993 4.60788 4.62685 4.65649 4.70342 4.78934 4.92358 5.10212 5.12946 5.15409 5.19757 5.59840 5.78496 6.16772 6.18371 6.46508 6.53943 6.67010 7.07634 8.71672 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.021222 B = 0.002692 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.090903 B =10398.261538 C =10564.038037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.066 3.934 3 N -0.321 5.321 4 N -0.339 5.339 5 C 0.239 3.761 6 C -0.552 4.552 7 H 0.031 0.969 8 C 0.028 3.972 9 N -0.932 5.932 10 Si 0.944 3.056 11 H -0.250 1.250 12 H -0.277 1.277 13 H -0.248 1.248 14 C 0.101 3.899 15 C -0.087 4.087 16 C -0.108 4.108 17 O -0.224 6.224 18 C 0.490 3.510 19 O -0.503 6.503 20 C -0.091 4.091 21 C -0.070 4.070 22 C 0.145 3.855 23 N -0.474 5.474 24 C 0.272 3.728 25 F -0.104 7.104 26 C 0.069 3.931 27 F -0.115 7.115 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.275 0.725 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.204 0.796 38 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.513 -20.691 6.126 24.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 N -0.144 5.144 4 N -0.118 5.118 5 C 0.120 3.880 6 C -0.590 4.590 7 H 0.050 0.950 8 C -0.173 4.173 9 N -0.570 5.570 10 Si 0.765 3.235 11 H -0.174 1.174 12 H -0.202 1.202 13 H -0.172 1.172 14 C -0.031 4.031 15 C -0.145 4.145 16 C -0.162 4.162 17 O -0.135 6.135 18 C 0.334 3.666 19 O -0.390 6.390 20 C -0.100 4.100 21 C -0.090 4.090 22 C -0.012 4.012 23 N -0.188 5.188 24 C 0.118 3.882 25 F -0.083 7.083 26 C 0.045 3.955 27 F -0.093 7.093 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.221 0.779 38 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -11.422 -19.842 6.496 23.798 hybrid contribution 0.936 1.001 0.883 1.631 sum -10.485 -18.840 7.379 22.789 Atomic orbital electron populations 1.20308 0.83705 1.04944 1.03707 1.23114 0.98998 0.89231 0.98685 1.77350 0.87337 1.23456 1.26267 1.48625 1.05732 1.04402 1.53066 1.19886 0.80198 0.90296 0.97663 1.21164 1.14116 1.32925 0.90781 0.95045 1.25733 0.97483 0.95191 0.98891 1.70007 1.27660 1.37729 1.21573 0.85774 0.79629 0.78954 0.79120 1.17375 1.20187 1.17207 1.21586 0.97845 0.85715 0.97998 1.20543 0.91889 0.97295 1.04761 1.17570 0.90275 0.82663 1.25682 1.84717 1.76341 1.22735 1.29659 1.21784 0.74745 0.87245 0.82834 1.90924 1.46302 1.64800 1.36965 1.19455 1.05375 0.91526 0.93672 1.23079 0.92349 0.94366 0.99215 1.23600 0.91341 0.92123 0.94129 1.67152 1.14866 1.38510 0.98300 1.17903 1.01060 0.86127 0.83129 1.91675 1.92306 1.82781 1.41557 1.18607 1.03671 0.90589 0.82618 1.91617 1.91700 1.79648 1.46382 0.89932 0.89778 0.88102 0.93034 0.91066 0.91578 0.88464 0.88778 0.90016 0.77910 0.74532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.81 10.44 71.24 0.74 -1.07 16 2 C 0.07 2.49 7.23 43.17 0.31 2.80 16 3 N -0.32 -14.48 12.57 -47.19 -0.59 -15.08 16 4 N -0.34 -15.38 3.60 -337.93 -1.22 -16.60 16 5 C 0.24 11.20 5.07 85.63 0.43 11.63 16 6 C -0.55 -30.70 9.94 25.60 0.25 -30.44 16 7 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 8 C 0.03 1.51 5.47 84.66 0.46 1.98 16 9 N -0.93 -55.15 13.96 21.45 0.30 -54.85 16 10 Si 0.94 40.05 27.47 68.60 1.88 41.93 16 11 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 12 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 13 H -0.25 -9.90 6.54 99.48 0.65 -9.25 16 14 C 0.10 3.94 6.95 41.44 0.29 4.22 16 15 C -0.09 -2.65 10.09 71.24 0.72 -1.93 16 16 C -0.11 -3.89 5.35 22.14 0.12 -3.77 16 17 O -0.22 -6.16 9.48 -2.05 -0.02 -6.18 16 18 C 0.49 13.22 7.86 70.38 0.55 13.77 16 19 O -0.50 -17.87 15.25 19.95 0.30 -17.56 16 20 C -0.09 -1.70 5.91 -19.87 -0.12 -1.82 16 21 C -0.07 -0.62 9.70 22.63 0.22 -0.40 16 22 C 0.14 0.91 11.16 84.60 0.94 1.85 16 23 N -0.47 -6.79 10.34 -196.92 -2.04 -8.83 16 24 C 0.27 5.13 8.42 84.84 0.71 5.85 16 25 F -0.10 -2.20 17.21 44.97 0.77 -1.42 16 26 C 0.07 1.48 7.34 22.84 0.17 1.65 16 27 F -0.12 -3.18 15.63 44.97 0.70 -2.48 16 28 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 29 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.05 2.44 7.20 -2.39 -0.02 2.42 16 32 H 0.07 2.96 6.48 -2.39 -0.02 2.95 16 33 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 34 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.08 2.43 7.08 -2.38 -0.02 2.41 16 37 H 0.20 0.67 7.71 -2.91 -0.02 0.65 16 38 H 0.24 -0.87 8.06 -2.91 -0.02 -0.90 16 Total: -1.00 -77.91 350.82 6.99 -70.91 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 1.08 Total: 5.82 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 5.81 Total: 4.33 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -3.55 Total: -95.35 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: 0.28 Total: -23.74 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 1.48 Total: -3.90 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 1.88 Total: 41.93 kcal Total: -77.91 6.99 -70.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337748731.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.538 kcal (2) G-P(sol) polarization free energy of solvation -77.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds