Wall clock time and date at job start Tue Mar 31 2020 19:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50694 * 120.00534 * 2 1 4 4 N 1.46500 * 109.47165 * 125.00313 * 3 2 1 5 5 C 1.46506 * 119.99710 * 274.83153 * 4 3 2 6 6 C 1.50698 * 109.47079 * 263.74402 * 5 4 3 7 7 H 1.08001 * 120.00000 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00182 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00148 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99760 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.46807 * 90.00662 * 10 8 6 12 12 H 1.48500 * 109.47417 * 210.00206 * 10 8 6 13 13 H 1.48496 * 109.47456 * 330.00735 * 10 8 6 14 14 C 1.34779 * 120.00530 * 94.83355 * 4 3 2 15 15 O 1.21355 * 119.99282 * 354.61313 * 14 4 3 16 16 C 1.49368 * 120.00341 * 174.61795 * 14 4 3 17 17 O 1.21359 * 119.99839 * 0.24718 * 16 14 4 18 18 N 1.34779 * 119.99903 * 180.24938 * 16 14 4 19 19 C 1.39391 * 119.99938 * 184.92792 * 18 16 14 20 20 C 1.39493 * 120.85640 * 325.31022 * 19 18 16 21 21 C 1.37892 * 119.10109 * 180.02562 * 20 19 18 22 22 C 1.50697 * 119.57151 * 180.02562 * 21 20 19 23 23 N 1.32005 * 120.85653 * 359.97438 * 21 20 19 24 24 C 1.32040 * 121.89003 * 359.77646 * 23 21 20 25 25 Cl 1.73597 * 119.59602 * 180.24313 * 24 23 21 26 26 C 1.38138 * 120.80649 * 0.48905 * 24 23 21 27 27 H 1.07996 * 120.00275 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99368 * 359.97438 * 1 2 3 29 29 H 1.08008 * 119.99666 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47029 * 5.00642 * 3 2 1 31 31 H 1.08998 * 109.47661 * 245.00303 * 3 2 1 32 32 H 1.08989 * 109.47435 * 23.74569 * 5 4 3 33 33 H 1.09004 * 109.46814 * 143.75008 * 5 4 3 34 34 H 0.97004 * 119.99736 * 179.97438 * 9 8 6 35 35 H 0.96995 * 119.99726 * 4.93457 * 18 16 14 36 36 H 1.08003 * 120.45292 * 0.02562 * 20 19 18 37 37 H 1.09007 * 109.47199 * 90.00451 * 22 21 20 38 38 H 1.09002 * 109.47434 * 209.99703 * 22 21 20 39 39 H 1.08995 * 109.47359 * 330.00031 * 22 21 20 40 40 H 1.08000 * 120.47129 * 179.77574 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3317 1.1314 5 6 2.5295 1.7654 2.4515 6 6 2.8583 3.2232 2.6456 7 1 3.3623 3.7719 1.8637 8 6 2.5156 3.8566 3.8213 9 7 2.8020 5.1290 3.9905 10 14 1.6432 2.9078 5.1734 11 1 2.6498 2.3035 6.0826 12 1 0.7720 3.8315 5.9435 13 1 0.8143 1.8341 4.5691 14 6 4.2769 0.9572 0.9579 15 8 4.6382 0.5058 -0.1090 16 6 5.2541 1.0979 2.0788 17 8 4.8917 1.5451 3.1472 18 7 6.5383 0.7281 1.9037 19 6 7.4261 0.7624 2.9777 20 6 7.3244 1.7487 3.9588 21 6 8.2223 1.7488 5.0054 22 6 8.1218 2.8091 6.0715 23 7 9.1680 0.8314 5.0861 24 6 9.2947 -0.1214 4.1808 25 17 10.5567 -1.3015 4.3489 26 6 8.4384 -0.1876 3.0988 27 1 -0.5400 -0.9352 0.0004 28 1 -0.5399 0.9354 0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3587 2.1316 0.0897 31 1 2.6213 1.4025 -0.9314 32 1 1.4512 1.6237 2.5220 33 1 3.0248 1.1755 3.2227 34 1 2.5606 5.5746 4.8176 35 1 6.8447 0.4383 1.0302 36 1 6.5529 2.5022 3.8996 37 1 7.4666 2.4606 6.8699 38 1 9.1130 3.0115 6.4773 39 1 7.7131 3.7221 5.6385 40 1 8.5492 -0.9672 2.3596 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338172373.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:03 Heat of formation + Delta-G solvation = 3.923887 kcal Electronic energy + Delta-G solvation = -26761.367591 eV Core-core repulsion = 22796.815506 eV Total energy + Delta-G solvation = -3964.552084 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.07697 -39.94948 -38.28342 -36.75636 -36.26048 -35.17406 -33.42144 -32.51834 -32.22404 -30.97657 -28.28879 -27.69773 -26.78216 -24.54139 -23.22020 -22.54441 -21.41895 -20.20103 -19.44773 -17.86362 -17.24615 -17.08241 -16.50681 -16.30255 -15.88560 -15.59768 -15.13976 -14.92428 -14.73291 -14.50693 -14.16961 -13.84485 -13.44920 -13.27185 -12.96837 -12.87792 -12.46801 -12.32074 -12.22236 -11.98446 -11.72352 -11.58469 -11.42334 -11.38383 -11.09168 -10.82304 -10.77205 -10.57383 -10.28500 -9.81149 -9.65051 -9.37801 -8.96752 -8.82087 -8.73391 -8.57581 -8.10405 -6.16139 -4.14325 0.90783 0.98118 1.65828 1.88548 2.23062 2.70472 3.24478 3.29600 3.32985 3.46845 3.69025 3.83595 4.31518 4.33887 4.60926 4.85814 4.89592 5.10023 5.11224 5.17915 5.29663 5.31707 5.51162 5.64639 5.69142 5.76531 5.93588 6.01446 6.05618 6.07268 6.23273 6.26850 6.63519 6.69569 6.76708 6.78663 6.99279 7.18438 7.45539 7.70823 7.74594 7.97268 8.29880 8.42737 8.83062 9.43920 10.96714 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011148 B = 0.003985 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.032641 B = 7024.002833 C = 8870.160299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C 0.140 3.860 4 N -0.549 5.549 5 C 0.199 3.801 6 C -0.518 4.518 7 H 0.073 0.927 8 C 0.083 3.917 9 N -0.895 5.895 10 Si 0.871 3.129 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.513 3.487 15 O -0.551 6.551 16 C 0.494 3.506 17 O -0.429 6.429 18 N -0.656 5.656 19 C 0.216 3.784 20 C -0.170 4.170 21 C 0.165 3.835 22 C -0.104 4.104 23 N -0.495 5.495 24 C 0.196 3.804 25 Cl -0.037 7.037 26 C -0.195 4.195 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.033 0.967 33 H 0.055 0.945 34 H 0.265 0.735 35 H 0.422 0.578 36 H 0.168 0.832 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.081 -9.915 -2.596 12.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.181 4.181 3 C 0.018 3.982 4 N -0.278 5.278 5 C 0.079 3.921 6 C -0.557 4.557 7 H 0.091 0.909 8 C -0.120 4.120 9 N -0.533 5.533 10 Si 0.698 3.302 11 H -0.198 1.198 12 H -0.212 1.212 13 H -0.192 1.192 14 C 0.295 3.705 15 O -0.431 6.431 16 C 0.276 3.724 17 O -0.295 6.295 18 N -0.305 5.305 19 C 0.112 3.888 20 C -0.192 4.192 21 C 0.029 3.971 22 C -0.161 4.161 23 N -0.210 5.210 24 C 0.031 3.969 25 Cl -0.008 7.008 26 C -0.219 4.219 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.260 0.740 36 H 0.185 0.815 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.516 -9.702 -1.536 12.369 hybrid contribution -0.754 -0.727 -0.296 1.089 sum 6.761 -10.429 -1.832 12.564 Atomic orbital electron populations 1.23843 0.95734 1.01910 1.00728 1.23307 0.96146 0.98979 0.99701 1.20660 0.92196 0.95505 0.89876 1.47911 1.07247 1.59930 1.12731 1.20335 0.95595 0.97609 0.78590 1.21063 1.39486 0.92126 1.02986 0.90894 1.24696 0.95131 0.94556 0.97601 1.69880 1.47080 1.09865 1.26450 0.86936 0.80141 0.80169 0.82951 1.19754 1.21220 1.19183 1.19592 0.83686 0.79935 0.87324 1.90684 1.78707 1.46391 1.27349 1.20461 0.82505 0.79531 0.89886 1.90937 1.76571 1.35890 1.26114 1.43132 1.08642 1.66636 1.12111 1.17776 0.89379 0.92476 0.89217 1.22444 1.01793 0.99774 0.95201 1.21060 0.88444 0.93056 0.94570 1.20770 1.03554 0.95576 0.96216 1.66814 1.22864 1.03423 1.27856 1.21115 0.91506 0.92252 0.91982 1.98391 1.50717 1.54096 1.97622 1.21447 0.98494 1.01085 1.00841 0.88577 0.88185 0.87503 0.88997 0.89153 0.94922 0.92710 0.92536 0.73968 0.81492 0.89819 0.90311 0.89696 0.83534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 14.32 29.02 0.42 -1.86 16 2 C -0.16 -2.30 9.84 -36.03 -0.35 -2.65 16 3 C 0.14 2.27 5.83 -5.20 -0.03 2.24 16 4 N -0.55 -10.60 2.46 -176.98 -0.44 -11.04 16 5 C 0.20 4.38 3.85 -5.19 -0.02 4.36 16 6 C -0.52 -13.45 8.35 -34.44 -0.29 -13.73 16 7 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 8 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 9 N -0.89 -25.76 13.96 55.43 0.77 -24.99 16 10 Si 0.87 20.43 27.47 -169.99 -4.67 15.76 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 14 C 0.51 9.65 7.67 -11.62 -0.09 9.56 16 15 O -0.55 -10.27 16.04 5.49 0.09 -10.18 16 16 C 0.49 9.07 7.59 -11.62 -0.09 8.98 16 17 O -0.43 -9.09 9.59 5.49 0.05 -9.04 16 18 N -0.66 -9.70 5.33 -10.14 -0.05 -9.76 16 19 C 0.22 3.18 6.34 -83.54 -0.53 2.65 16 20 C -0.17 -2.73 8.40 -39.24 -0.33 -3.06 16 21 C 0.17 2.47 6.77 -82.65 -0.56 1.91 16 22 C -0.10 -1.30 10.17 36.00 0.37 -0.93 16 23 N -0.50 -7.45 10.25 -6.70 -0.07 -7.52 16 24 C 0.20 2.69 7.27 -17.50 -0.13 2.57 16 25 Cl -0.04 -0.43 29.10 -51.86 -1.51 -1.94 16 26 C -0.19 -2.49 9.83 -39.20 -0.39 -2.87 16 27 H 0.10 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.10 1.18 7.84 -52.49 -0.41 0.77 16 29 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 30 H 0.09 1.47 7.76 -51.93 -0.40 1.06 16 31 H 0.09 1.42 7.36 -51.93 -0.38 1.04 16 32 H 0.03 0.71 7.08 -51.94 -0.37 0.35 16 33 H 0.06 1.25 5.26 -51.93 -0.27 0.98 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.42 5.21 8.30 -40.82 -0.34 4.87 16 36 H 0.17 3.07 6.29 -52.48 -0.33 2.74 16 37 H 0.08 1.01 8.14 -51.92 -0.42 0.58 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 1.03 8.07 -51.93 -0.42 0.61 16 40 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 361.45 15.07 5.45 5.45 Total: -1.00 -30.02 361.45 -7.12 -37.14 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -4.63 Total: 6.81 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -2.12 Total: 9.30 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.22 Total: -53.30 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.14 Total: -19.22 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.67 Total: 15.76 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.51 Total: -1.94 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.02 -7.12 -37.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338172373.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.062 kcal (2) G-P(sol) polarization free energy of solvation -30.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds