Wall clock time and date at job start Tue Mar 31 2020 19:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50694 * 120.00534 * 2 1 4 4 N 1.46500 * 109.47165 * 125.00313 * 3 2 1 5 5 C 1.46506 * 119.99710 * 274.83153 * 4 3 2 6 6 C 1.50698 * 109.47079 * 263.74402 * 5 4 3 7 7 H 1.08001 * 120.00000 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00182 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00148 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99760 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.46807 * 90.00662 * 10 8 6 12 12 H 1.48500 * 109.47417 * 210.00206 * 10 8 6 13 13 H 1.48496 * 109.47456 * 330.00735 * 10 8 6 14 14 C 1.34779 * 120.00530 * 94.83355 * 4 3 2 15 15 O 1.21355 * 119.99282 * 354.61313 * 14 4 3 16 16 C 1.49368 * 120.00341 * 174.61795 * 14 4 3 17 17 O 1.21359 * 119.99839 * 0.24718 * 16 14 4 18 18 N 1.34779 * 119.99903 * 180.24938 * 16 14 4 19 19 C 1.39391 * 119.99938 * 184.92792 * 18 16 14 20 20 C 1.39493 * 120.85640 * 325.31022 * 19 18 16 21 21 C 1.37892 * 119.10109 * 180.02562 * 20 19 18 22 22 C 1.50697 * 119.57151 * 180.02562 * 21 20 19 23 23 N 1.32005 * 120.85653 * 359.97438 * 21 20 19 24 24 C 1.32040 * 121.89003 * 359.77646 * 23 21 20 25 25 Cl 1.73597 * 119.59602 * 180.24313 * 24 23 21 26 26 C 1.38138 * 120.80649 * 0.48905 * 24 23 21 27 27 H 1.07996 * 120.00275 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99368 * 359.97438 * 1 2 3 29 29 H 1.08008 * 119.99666 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47029 * 5.00642 * 3 2 1 31 31 H 1.08998 * 109.47661 * 245.00303 * 3 2 1 32 32 H 1.08989 * 109.47435 * 23.74569 * 5 4 3 33 33 H 1.09004 * 109.46814 * 143.75008 * 5 4 3 34 34 H 0.97004 * 119.99736 * 179.97438 * 9 8 6 35 35 H 0.96995 * 119.99726 * 4.93457 * 18 16 14 36 36 H 1.08003 * 120.45292 * 0.02562 * 20 19 18 37 37 H 1.09007 * 109.47199 * 90.00451 * 22 21 20 38 38 H 1.09002 * 109.47434 * 209.99703 * 22 21 20 39 39 H 1.08995 * 109.47359 * 330.00031 * 22 21 20 40 40 H 1.08000 * 120.47129 * 179.77574 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3317 1.1314 5 6 2.5295 1.7654 2.4515 6 6 2.8583 3.2232 2.6456 7 1 3.3623 3.7719 1.8637 8 6 2.5156 3.8566 3.8213 9 7 2.8020 5.1290 3.9905 10 14 1.6432 2.9078 5.1734 11 1 2.6498 2.3035 6.0826 12 1 0.7720 3.8315 5.9435 13 1 0.8143 1.8341 4.5691 14 6 4.2769 0.9572 0.9579 15 8 4.6382 0.5058 -0.1090 16 6 5.2541 1.0979 2.0788 17 8 4.8917 1.5451 3.1472 18 7 6.5383 0.7281 1.9037 19 6 7.4261 0.7624 2.9777 20 6 7.3244 1.7487 3.9588 21 6 8.2223 1.7488 5.0054 22 6 8.1218 2.8091 6.0715 23 7 9.1680 0.8314 5.0861 24 6 9.2947 -0.1214 4.1808 25 17 10.5567 -1.3015 4.3489 26 6 8.4384 -0.1876 3.0988 27 1 -0.5400 -0.9352 0.0004 28 1 -0.5399 0.9354 0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3587 2.1316 0.0897 31 1 2.6213 1.4025 -0.9314 32 1 1.4512 1.6237 2.5220 33 1 3.0248 1.1755 3.2227 34 1 2.5606 5.5746 4.8176 35 1 6.8447 0.4383 1.0302 36 1 6.5529 2.5022 3.8996 37 1 7.4666 2.4606 6.8699 38 1 9.1130 3.0115 6.4773 39 1 7.7131 3.7221 5.6385 40 1 8.5492 -0.9672 2.3596 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338172373.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:02 Heat of formation + Delta-G solvation = -15.065694 kcal Electronic energy + Delta-G solvation = -26762.191041 eV Core-core repulsion = 22796.815506 eV Total energy + Delta-G solvation = -3965.375535 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.40694 -41.25586 -39.69102 -37.83567 -37.67381 -36.47067 -34.99594 -33.94771 -33.59835 -32.20613 -30.07446 -28.78695 -28.13644 -25.89885 -24.67451 -24.04746 -22.69071 -21.47036 -20.67026 -19.20859 -19.07050 -18.60733 -17.83457 -17.60864 -17.16410 -17.02304 -16.41492 -16.28574 -15.97877 -15.86661 -15.72281 -15.21507 -14.85610 -14.57388 -14.38107 -14.12398 -13.93820 -13.88333 -13.31229 -13.22374 -13.16838 -12.90666 -12.69336 -12.65076 -12.37442 -12.31984 -12.23833 -11.99011 -11.90766 -11.66659 -11.02120 -10.74240 -10.53328 -10.22455 -10.00484 -9.93328 -9.67580 -8.24026 -6.25467 -0.27028 -0.20262 0.43500 0.61796 1.05409 1.38322 1.41946 1.47076 1.50758 2.07007 2.37827 2.45851 2.47564 3.13434 3.18145 3.24321 3.70819 3.80562 3.92045 4.01439 4.12696 4.27609 4.37887 4.44708 4.64658 4.66027 4.69611 4.76298 4.80604 4.92842 4.98956 5.04571 5.15766 5.31023 5.46808 5.50379 5.67602 5.81073 5.88439 6.07004 6.33535 6.59387 6.61901 6.70747 6.89830 7.36191 8.92417 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011148 B = 0.003985 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.032641 B = 7024.002833 C = 8870.160299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.183 4.183 3 C 0.136 3.864 4 N -0.556 5.556 5 C 0.213 3.787 6 C -0.508 4.508 7 H 0.030 0.970 8 C 0.030 3.970 9 N -0.942 5.942 10 Si 0.929 3.071 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.242 1.242 14 C 0.510 3.490 15 O -0.548 6.548 16 C 0.495 3.505 17 O -0.464 6.464 18 N -0.639 5.639 19 C 0.206 3.794 20 C -0.187 4.187 21 C 0.161 3.839 22 C -0.102 4.102 23 N -0.505 5.505 24 C 0.189 3.811 25 Cl -0.014 7.014 26 C -0.178 4.178 27 H 0.120 0.880 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.265 0.735 35 H 0.435 0.565 36 H 0.139 0.861 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.916 -12.477 -2.710 14.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.202 4.202 3 C 0.015 3.985 4 N -0.285 5.285 5 C 0.091 3.909 6 C -0.546 4.546 7 H 0.049 0.951 8 C -0.168 4.168 9 N -0.583 5.583 10 Si 0.754 3.246 11 H -0.201 1.201 12 H -0.210 1.210 13 H -0.165 1.165 14 C 0.293 3.707 15 O -0.429 6.429 16 C 0.277 3.723 17 O -0.334 6.334 18 N -0.288 5.288 19 C 0.102 3.898 20 C -0.210 4.210 21 C 0.024 3.976 22 C -0.159 4.159 23 N -0.219 5.219 24 C 0.024 3.976 25 Cl 0.014 6.986 26 C -0.201 4.201 27 H 0.138 0.862 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.276 0.724 36 H 0.156 0.844 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 7.373 -12.304 -1.707 14.446 hybrid contribution -0.586 0.043 -0.370 0.695 sum 6.787 -12.261 -2.077 14.167 Atomic orbital electron populations 1.24102 0.95058 1.03335 0.97403 1.23127 0.96710 0.97689 1.02685 1.20814 0.91918 0.96986 0.88743 1.47930 1.07998 1.59986 1.12622 1.19994 0.95939 0.94818 0.80119 1.21166 1.37942 0.93950 1.01585 0.95128 1.25459 0.96139 0.95238 1.00000 1.70021 1.49239 1.11756 1.27294 0.85990 0.79200 0.79440 0.79989 1.20094 1.21037 1.16502 1.19706 0.83723 0.79821 0.87497 1.90674 1.78621 1.46347 1.27245 1.20490 0.83450 0.79138 0.89251 1.90928 1.77398 1.37813 1.27222 1.42925 1.07546 1.65471 1.12870 1.17871 0.89993 0.92984 0.88955 1.22287 1.01905 1.00119 0.96662 1.21280 0.88121 0.93546 0.94652 1.20808 1.04539 0.94852 0.95749 1.66895 1.22811 1.03789 1.28444 1.21435 0.92040 0.92262 0.91878 1.98400 1.49624 1.52993 1.97547 1.21662 0.96781 1.00716 1.00952 0.86178 0.87650 0.87412 0.89175 0.89134 0.93816 0.92915 0.92592 0.72450 0.84353 0.89423 0.88735 0.90035 0.80302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 14.32 67.78 0.97 -2.53 16 2 C -0.18 -4.84 9.84 25.65 0.25 -4.59 16 3 C 0.14 4.34 5.83 85.63 0.50 4.84 16 4 N -0.56 -21.37 2.46 -832.19 -2.05 -23.41 16 5 C 0.21 9.31 3.85 85.63 0.33 9.64 16 6 C -0.51 -27.05 8.35 25.60 0.21 -26.84 16 7 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16 8 C 0.03 1.65 5.47 84.66 0.46 2.12 16 9 N -0.94 -56.18 13.96 21.45 0.30 -55.88 16 10 Si 0.93 42.10 27.47 68.60 1.88 43.98 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 14 C 0.51 19.13 7.67 87.24 0.67 19.80 16 15 O -0.55 -19.99 16.04 -3.26 -0.05 -20.04 16 16 C 0.49 18.29 7.59 87.24 0.66 18.96 16 17 O -0.46 -20.21 9.59 -3.27 -0.03 -20.24 16 18 N -0.64 -18.53 5.33 -304.34 -1.62 -20.15 16 19 C 0.21 5.95 6.34 38.51 0.24 6.19 16 20 C -0.19 -6.17 8.40 22.49 0.19 -5.98 16 21 C 0.16 4.80 6.77 42.45 0.29 5.08 16 22 C -0.10 -2.57 10.17 71.23 0.72 -1.85 16 23 N -0.50 -14.64 10.25 -175.12 -1.79 -16.44 16 24 C 0.19 4.83 7.27 84.64 0.62 5.44 16 25 Cl -0.01 -0.30 29.10 -2.72 -0.08 -0.38 16 26 C -0.18 -4.18 9.83 22.51 0.22 -3.96 16 27 H 0.12 2.05 8.06 -2.91 -0.02 2.03 16 28 H 0.11 2.18 7.84 -2.91 -0.02 2.16 16 29 H 0.11 2.83 8.06 -2.91 -0.02 2.81 16 30 H 0.09 2.84 7.76 -2.39 -0.02 2.82 16 31 H 0.09 2.82 7.36 -2.39 -0.02 2.80 16 32 H 0.04 1.83 7.08 -2.39 -0.02 1.82 16 33 H 0.05 2.39 5.26 -2.38 -0.01 2.38 16 34 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 35 H 0.43 10.16 8.30 -92.71 -0.77 9.39 16 36 H 0.14 5.43 6.29 -2.91 -0.02 5.41 16 37 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 38 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.08 2.07 8.07 -2.39 -0.02 2.05 16 40 H 0.18 2.97 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -65.81 361.45 3.17 -62.64 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 0.27 Total: 23.58 kcal Atomic # 6 Polarization: 19.99 SS G_CDS: 6.34 Total: 26.34 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -5.16 Total: -115.88 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -0.08 Total: -40.28 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.88 Total: 43.98 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.08 Total: -0.38 kcal Total: -65.81 3.17 -62.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338172373.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.577 kcal (2) G-P(sol) polarization free energy of solvation -65.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds