Wall clock time and date at job start Tue Mar 31 2020 20:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34231 * 116.99862 * 2 1 4 4 O 1.20831 * 120.00069 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99821 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.46879 * 179.97438 * 5 3 2 7 7 N 1.46501 * 109.47011 * 179.97438 * 6 5 3 8 8 C 1.36928 * 120.00004 * 270.00183 * 7 6 5 9 9 H 1.08000 * 120.00061 * 350.48164 * 8 7 6 10 10 C 1.38800 * 119.99887 * 170.48121 * 8 7 6 11 11 N 1.31571 * 119.99769 * 4.91909 * 10 8 7 12 12 Si 1.86793 * 120.00011 * 184.92018 * 10 8 7 13 13 H 1.48497 * 109.47257 * 359.97438 * 12 10 8 14 14 H 1.48508 * 109.47318 * 120.00124 * 12 10 8 15 15 H 1.48498 * 109.47139 * 239.99576 * 12 10 8 16 16 C 1.38224 * 119.99458 * 90.00046 * 7 6 5 17 17 N 1.31573 * 126.45820 * 268.40477 * 16 7 6 18 18 N 1.28414 * 110.49929 * 180.02562 * 17 16 7 19 19 N 1.28914 * 110.35144 * 359.70468 * 18 17 16 20 20 N 1.35432 * 126.45689 * 88.45548 * 16 7 6 21 21 C 1.46504 * 127.39113 * 359.96041 * 20 16 7 22 22 C 1.50693 * 109.47183 * 95.51870 * 21 20 16 23 23 C 1.33385 * 125.20294 * 84.24368 * 22 21 20 24 24 C 1.38421 * 114.92446 * 180.02562 * 23 22 21 25 25 C 1.33387 * 114.91963 * 0.24463 * 24 23 22 26 26 S 1.75883 * 125.20534 * 264.28165 * 22 21 20 27 27 H 1.08998 * 109.46626 * 60.00372 * 1 2 3 28 28 H 1.08994 * 109.46641 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47007 * 300.00337 * 1 2 3 30 30 H 1.08991 * 109.47254 * 59.99594 * 5 3 2 31 31 H 1.08998 * 109.47067 * 299.99182 * 5 3 2 32 32 H 1.09004 * 109.46775 * 59.99836 * 6 5 3 33 33 H 1.08998 * 109.47035 * 299.99730 * 6 5 3 34 34 H 0.97004 * 119.99455 * 185.02004 * 11 10 8 35 35 H 1.09001 * 109.46427 * 335.51953 * 21 20 16 36 36 H 1.08996 * 109.47130 * 215.52459 * 21 20 16 37 37 H 1.08001 * 122.54184 * 0.05020 * 23 22 21 38 38 H 1.07999 * 122.54145 * 179.97438 * 24 23 22 39 39 H 1.08004 * 125.20584 * 179.75516 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0002 2.7421 -0.0002 7 7 5.4632 2.8188 0.0010 8 6 6.1458 2.8556 1.1874 9 1 5.6088 2.9830 2.1157 10 6 7.5280 2.7290 1.1969 11 7 8.1911 2.6710 0.0620 12 14 8.4467 2.6409 2.8209 13 1 7.4779 2.7275 3.9430 14 1 9.1858 1.3554 2.9025 15 1 9.4069 3.7703 2.9083 16 6 6.1542 2.8541 -1.1956 17 7 6.6260 1.8190 -1.8568 18 7 7.2168 2.2026 -2.9305 19 7 7.1629 3.4861 -3.0379 20 7 6.4742 3.9607 -1.9078 21 6 6.1633 5.3533 -1.5755 22 6 7.3391 5.9752 -0.8674 23 6 8.3999 6.5166 -1.4680 24 6 9.3585 7.0275 -0.6100 25 6 9.0784 6.8965 0.6876 26 16 7.5230 6.0976 0.8775 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3632 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 3.9565 0.7806 -0.8890 31 1 3.9557 0.7811 0.8909 32 1 3.6100 3.2368 0.8893 33 1 3.6108 3.2356 -0.8907 34 1 9.1476 2.5096 0.0669 35 1 5.2891 5.3850 -0.9252 36 1 5.9556 5.9075 -2.4908 37 1 8.5031 6.5539 -2.5424 38 1 10.2664 7.4929 -0.9642 39 1 9.7094 7.2314 1.4977 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340249665.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:27 Heat of formation + Delta-G solvation = 99.194875 kcal Electronic energy + Delta-G solvation = -27561.142373 eV Core-core repulsion = 23635.058006 eV Total energy + Delta-G solvation = -3926.084367 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.28428 -40.25176 -37.41564 -36.85551 -36.10855 -33.95694 -32.47575 -30.77996 -29.92184 -29.30473 -27.56104 -26.15381 -24.98932 -23.51794 -22.74744 -21.42177 -20.81336 -20.12900 -18.82903 -17.88250 -17.48055 -16.87200 -16.40882 -16.34803 -15.97006 -15.34741 -14.99142 -14.55742 -14.27807 -13.95089 -13.57505 -13.45621 -13.13944 -12.66729 -12.62395 -12.54205 -12.35080 -12.09155 -11.94884 -11.67407 -11.43251 -11.31306 -11.15997 -10.86035 -10.75777 -10.65488 -10.53906 -10.32884 -10.19917 -10.13340 -9.59590 -9.31020 -9.14707 -8.59440 -8.23284 -7.87765 -7.61246 -6.16495 -3.76213 1.39818 2.20343 2.41330 2.53006 2.58432 2.81461 3.05829 3.19704 3.24427 3.29267 3.43783 3.98635 4.14620 4.65939 5.08532 5.09491 5.11471 5.15358 5.15679 5.19965 5.44019 5.44476 5.45668 5.55734 5.62530 5.92146 5.95889 6.00286 6.18126 6.37794 6.49771 6.55895 6.63399 6.73584 6.82848 6.90713 6.97524 7.29103 7.37633 7.89030 7.93404 8.77877 9.23747 9.60337 10.08248 10.84859 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012958 B = 0.004479 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.237799 B = 6250.332683 C = 6785.344821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.517 6.517 5 C -0.135 4.135 6 C 0.169 3.831 7 N -0.511 5.511 8 C -0.290 4.290 9 H 0.099 0.901 10 C 0.033 3.967 11 N -0.874 5.874 12 Si 0.906 3.094 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.582 3.418 17 N -0.333 5.333 18 N -0.057 5.057 19 N -0.133 5.133 20 N -0.391 5.391 21 C 0.212 3.788 22 C -0.181 4.181 23 C -0.125 4.125 24 C -0.141 4.141 25 C -0.237 4.237 26 S 0.176 5.824 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.270 0.730 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.871 4.541 1.584 9.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.310 3.690 4 O -0.406 6.406 5 C -0.175 4.175 6 C 0.043 3.957 7 N -0.233 5.233 8 C -0.417 4.417 9 H 0.117 0.883 10 C -0.170 4.170 11 N -0.514 5.514 12 Si 0.734 3.266 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.210 1.210 16 C 0.220 3.780 17 N -0.191 5.191 18 N -0.054 5.054 19 N -0.120 5.120 20 N -0.193 5.193 21 C 0.086 3.914 22 C -0.301 4.301 23 C -0.157 4.157 24 C -0.172 4.172 25 C -0.374 4.374 26 S 0.442 5.558 27 H 0.078 0.922 28 H 0.115 0.885 29 H 0.079 0.921 30 H 0.125 0.875 31 H 0.133 0.867 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.150 0.850 38 H 0.146 0.854 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.113 3.840 1.812 9.157 hybrid contribution 1.310 0.863 0.449 1.632 sum -6.803 4.703 2.261 8.574 Atomic orbital electron populations 1.23195 0.77180 1.03270 1.02270 1.86574 1.22862 1.34193 1.84227 1.24247 0.92509 0.80929 0.71302 1.90628 1.67544 1.36334 1.46056 1.22238 0.85195 1.03139 1.06947 1.20777 0.80771 0.92168 1.02012 1.40633 1.00900 1.82572 0.99146 1.19380 0.89414 1.49332 0.83618 0.88332 1.24851 0.96464 0.98255 0.97429 1.69179 1.08981 1.49365 1.23874 0.86145 0.80081 0.77914 0.82463 1.19667 1.21055 1.20982 1.20620 0.87921 0.82730 0.86731 1.74693 1.15977 1.24743 1.03723 1.77633 1.11572 1.03872 1.12294 1.82097 1.17480 1.06313 1.06095 1.52273 1.41606 1.07078 1.18380 1.19738 0.93959 0.78616 0.99112 1.24378 1.01957 1.06717 0.97018 1.19939 0.93553 1.01498 1.00741 1.19942 1.00737 1.04184 0.92378 1.25710 1.03281 1.08078 1.00360 1.84493 1.14690 1.52898 1.03683 0.92162 0.88485 0.92118 0.87468 0.86722 0.90278 0.92683 0.91778 0.88410 0.88414 0.85018 0.85399 0.82975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -5.01 10.57 -39.26 -0.41 -5.42 16 3 C 0.47 7.15 7.96 36.01 0.29 7.43 16 4 O -0.52 -8.79 15.73 -18.75 -0.30 -9.08 16 5 C -0.14 -2.16 6.14 -27.88 -0.17 -2.33 16 6 C 0.17 2.95 4.94 -4.04 -0.02 2.93 16 7 N -0.51 -10.77 2.61 -116.59 -0.30 -11.08 16 8 C -0.29 -6.49 9.78 -15.07 -0.15 -6.64 16 9 H 0.10 2.11 7.82 -52.49 -0.41 1.70 16 10 C 0.03 0.79 4.81 -17.46 -0.08 0.70 16 11 N -0.87 -22.68 10.03 55.49 0.56 -22.12 16 12 Si 0.91 19.79 29.56 -169.99 -5.02 14.77 16 13 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 16 C 0.58 13.34 4.89 -320.35 -1.57 11.77 16 17 N -0.33 -8.40 11.27 30.10 0.34 -8.06 16 18 N -0.06 -1.43 13.38 60.35 0.81 -0.63 16 19 N -0.13 -3.10 13.93 60.35 0.84 -2.26 16 20 N -0.39 -8.40 3.64 -63.03 -0.23 -8.63 16 21 C 0.21 3.73 7.01 -5.19 -0.04 3.69 16 22 C -0.18 -3.28 6.09 -36.01 -0.22 -3.50 16 23 C -0.13 -2.17 10.05 -41.21 -0.41 -2.59 16 24 C -0.14 -2.30 10.18 -41.21 -0.42 -2.71 16 25 C -0.24 -3.92 11.23 29.04 0.33 -3.59 16 26 S 0.18 3.16 22.69 -107.50 -2.44 0.72 16 27 H 0.06 0.60 8.13 -51.93 -0.42 0.17 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 30 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 31 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16 32 H 0.08 1.31 7.98 -51.93 -0.41 0.89 16 33 H 0.05 0.94 8.00 -51.93 -0.42 0.53 16 34 H 0.27 7.31 8.32 -40.82 -0.34 6.97 16 35 H 0.10 1.60 8.10 -51.93 -0.42 1.18 16 36 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.13 2.15 8.06 -52.49 -0.42 1.73 16 38 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 39 H 0.15 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 361.56 15.07 5.45 5.45 Total: -1.00 -29.78 361.56 -6.71 -36.50 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -4.60 Total: 3.25 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -1.40 Total: 6.58 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 2.01 Total: -52.77 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.71 Total: -14.50 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -2.44 Total: 0.72 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.78 -6.71 -36.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340249665.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.690 kcal (2) G-P(sol) polarization free energy of solvation -29.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds