Wall clock time and date at job start Tue Mar 31 2020 20:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34231 * 116.99862 * 2 1 4 4 O 1.20831 * 120.00069 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99821 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.46879 * 179.97438 * 5 3 2 7 7 N 1.46501 * 109.47011 * 179.97438 * 6 5 3 8 8 C 1.36928 * 120.00004 * 270.00183 * 7 6 5 9 9 H 1.08000 * 120.00061 * 350.48164 * 8 7 6 10 10 C 1.38800 * 119.99887 * 170.48121 * 8 7 6 11 11 N 1.31571 * 119.99769 * 4.91909 * 10 8 7 12 12 Si 1.86793 * 120.00011 * 184.92018 * 10 8 7 13 13 H 1.48497 * 109.47257 * 359.97438 * 12 10 8 14 14 H 1.48508 * 109.47318 * 120.00124 * 12 10 8 15 15 H 1.48498 * 109.47139 * 239.99576 * 12 10 8 16 16 C 1.38224 * 119.99458 * 90.00046 * 7 6 5 17 17 N 1.31573 * 126.45820 * 268.40477 * 16 7 6 18 18 N 1.28414 * 110.49929 * 180.02562 * 17 16 7 19 19 N 1.28914 * 110.35144 * 359.70468 * 18 17 16 20 20 N 1.35432 * 126.45689 * 88.45548 * 16 7 6 21 21 C 1.46504 * 127.39113 * 359.96041 * 20 16 7 22 22 C 1.50693 * 109.47183 * 95.51870 * 21 20 16 23 23 C 1.33385 * 125.20294 * 84.24368 * 22 21 20 24 24 C 1.38421 * 114.92446 * 180.02562 * 23 22 21 25 25 C 1.33387 * 114.91963 * 0.24463 * 24 23 22 26 26 S 1.75883 * 125.20534 * 264.28165 * 22 21 20 27 27 H 1.08998 * 109.46626 * 60.00372 * 1 2 3 28 28 H 1.08994 * 109.46641 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47007 * 300.00337 * 1 2 3 30 30 H 1.08991 * 109.47254 * 59.99594 * 5 3 2 31 31 H 1.08998 * 109.47067 * 299.99182 * 5 3 2 32 32 H 1.09004 * 109.46775 * 59.99836 * 6 5 3 33 33 H 1.08998 * 109.47035 * 299.99730 * 6 5 3 34 34 H 0.97004 * 119.99455 * 185.02004 * 11 10 8 35 35 H 1.09001 * 109.46427 * 335.51953 * 21 20 16 36 36 H 1.08996 * 109.47130 * 215.52459 * 21 20 16 37 37 H 1.08001 * 122.54184 * 0.05020 * 23 22 21 38 38 H 1.07999 * 122.54145 * 179.97438 * 24 23 22 39 39 H 1.08004 * 125.20584 * 179.75516 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0002 2.7421 -0.0002 7 7 5.4632 2.8188 0.0010 8 6 6.1458 2.8556 1.1874 9 1 5.6088 2.9830 2.1157 10 6 7.5280 2.7290 1.1969 11 7 8.1911 2.6710 0.0620 12 14 8.4467 2.6409 2.8209 13 1 7.4779 2.7275 3.9430 14 1 9.1858 1.3554 2.9025 15 1 9.4069 3.7703 2.9083 16 6 6.1542 2.8541 -1.1956 17 7 6.6260 1.8190 -1.8568 18 7 7.2168 2.2026 -2.9305 19 7 7.1629 3.4861 -3.0379 20 7 6.4742 3.9607 -1.9078 21 6 6.1633 5.3533 -1.5755 22 6 7.3391 5.9752 -0.8674 23 6 8.3999 6.5166 -1.4680 24 6 9.3585 7.0275 -0.6100 25 6 9.0784 6.8965 0.6876 26 16 7.5230 6.0976 0.8775 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3632 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 3.9565 0.7806 -0.8890 31 1 3.9557 0.7811 0.8909 32 1 3.6100 3.2368 0.8893 33 1 3.6108 3.2356 -0.8907 34 1 9.1476 2.5096 0.0669 35 1 5.2891 5.3850 -0.9252 36 1 5.9556 5.9075 -2.4908 37 1 8.5031 6.5539 -2.5424 38 1 10.2664 7.4929 -0.9642 39 1 9.7094 7.2314 1.4977 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340249665.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:26 Heat of formation + Delta-G solvation = 83.611571 kcal Electronic energy + Delta-G solvation = -27561.818115 eV Core-core repulsion = 23635.058006 eV Total energy + Delta-G solvation = -3926.760110 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.05529 -41.43751 -38.76098 -38.33718 -37.40417 -35.52177 -34.10751 -32.41612 -31.47912 -30.87564 -28.57246 -27.60963 -26.61279 -24.97198 -24.18736 -23.08013 -22.35985 -21.49402 -20.23161 -19.51198 -18.72241 -18.30362 -17.60719 -17.56044 -17.48639 -16.94128 -16.41910 -16.17197 -15.94453 -15.33398 -14.96476 -14.94279 -14.39821 -14.08766 -13.94697 -13.82237 -13.70476 -13.39744 -13.30315 -13.15148 -12.93364 -12.90821 -12.77787 -12.38108 -12.29574 -12.13514 -11.89943 -11.73174 -11.55628 -11.51339 -11.35714 -11.05597 -10.84553 -10.40800 -9.60964 -9.48747 -9.09480 -7.99210 -5.57022 0.02719 0.75999 0.91107 1.19850 1.24790 1.40012 1.44491 1.52686 1.55911 1.80766 2.01384 2.20896 2.44260 3.05811 3.33157 3.76948 3.81127 3.91283 4.07374 4.17334 4.23142 4.29300 4.35124 4.37600 4.59521 4.67735 4.71198 4.73741 4.81344 4.89177 5.02423 5.10214 5.18896 5.27209 5.41273 5.42241 5.57117 5.63581 5.65755 6.10398 6.74978 6.97336 7.53132 7.83126 8.27363 8.99582 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012958 B = 0.004479 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.237799 B = 6250.332683 C = 6785.344821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.368 6.368 3 C 0.476 3.524 4 O -0.535 6.535 5 C -0.126 4.126 6 C 0.169 3.831 7 N -0.516 5.516 8 C -0.274 4.274 9 H 0.113 0.887 10 C 0.000 4.000 11 N -0.898 5.898 12 Si 0.943 3.057 13 H -0.253 1.253 14 H -0.304 1.304 15 H -0.290 1.290 16 C 0.580 3.420 17 N -0.361 5.361 18 N -0.079 5.079 19 N -0.136 5.136 20 N -0.383 5.383 21 C 0.203 3.797 22 C -0.195 4.195 23 C -0.129 4.129 24 C -0.147 4.147 25 C -0.235 4.235 26 S 0.145 5.855 27 H 0.061 0.939 28 H 0.129 0.871 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.250 0.750 35 H 0.109 0.891 36 H 0.125 0.875 37 H 0.140 0.860 38 H 0.155 0.845 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.952 5.296 2.360 10.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C 0.320 3.680 4 O -0.425 6.425 5 C -0.166 4.166 6 C 0.044 3.956 7 N -0.238 5.238 8 C -0.401 4.401 9 H 0.130 0.870 10 C -0.200 4.200 11 N -0.540 5.540 12 Si 0.772 3.228 13 H -0.177 1.177 14 H -0.232 1.232 15 H -0.217 1.217 16 C 0.218 3.782 17 N -0.220 5.220 18 N -0.075 5.075 19 N -0.123 5.123 20 N -0.186 5.186 21 C 0.079 3.921 22 C -0.314 4.314 23 C -0.161 4.161 24 C -0.177 4.177 25 C -0.372 4.372 26 S 0.411 5.589 27 H 0.080 0.920 28 H 0.147 0.853 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.136 0.864 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.127 0.873 36 H 0.143 0.857 37 H 0.158 0.842 38 H 0.172 0.828 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -9.249 4.604 2.609 10.656 hybrid contribution 1.557 0.673 0.206 1.709 sum -7.692 5.277 2.815 9.743 Atomic orbital electron populations 1.23547 0.74846 1.05597 1.02590 1.86542 1.25099 1.33077 1.83699 1.23888 0.92041 0.81154 0.70891 1.90624 1.67843 1.36975 1.47064 1.21982 0.86147 1.01897 1.06566 1.20892 0.78734 0.93232 1.02748 1.40816 1.02038 1.82730 0.98225 1.19647 0.89239 1.46816 0.84426 0.86993 1.25230 0.97221 0.99007 0.98525 1.69351 1.07631 1.51932 1.25115 0.85547 0.79403 0.76428 0.81458 1.17696 1.23160 1.21695 1.20627 0.87768 0.82762 0.87042 1.74587 1.16771 1.26419 1.04238 1.77584 1.12544 1.04549 1.12849 1.81972 1.17465 1.05936 1.06945 1.52340 1.40497 1.08292 1.17479 1.20119 0.94352 0.76877 1.00759 1.24422 1.02494 1.07532 0.96953 1.20217 0.93526 1.00963 1.01443 1.20249 1.01411 1.03899 0.92186 1.26011 1.02491 1.07403 1.01273 1.84479 1.16269 1.53883 1.04222 0.92012 0.85253 0.91671 0.88608 0.86436 0.88998 0.92412 0.93836 0.87256 0.85668 0.84229 0.82792 0.80722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.68 16 2 O -0.37 -9.50 10.57 -51.43 -0.54 -10.05 16 3 C 0.48 13.88 7.96 71.24 0.57 14.45 16 4 O -0.53 -17.32 15.73 21.95 0.35 -16.97 16 5 C -0.13 -3.90 6.14 29.85 0.18 -3.71 16 6 C 0.17 5.67 4.94 86.38 0.43 6.09 16 7 N -0.52 -21.24 2.61 -522.77 -1.37 -22.61 16 8 C -0.27 -11.90 9.78 84.03 0.82 -11.08 16 9 H 0.11 4.54 7.82 -2.91 -0.02 4.52 16 10 C 0.00 -0.02 4.81 84.87 0.41 0.39 16 11 N -0.90 -46.84 10.03 21.65 0.22 -46.62 16 12 Si 0.94 40.09 29.56 68.60 2.03 42.11 16 13 H -0.25 -9.86 7.11 99.48 0.71 -9.16 16 14 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 15 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 16 C 0.58 26.39 4.89 260.63 1.27 27.66 16 17 N -0.36 -18.35 11.27 -58.67 -0.66 -19.02 16 18 N -0.08 -3.98 13.38 37.02 0.50 -3.49 16 19 N -0.14 -6.31 13.93 37.02 0.52 -5.79 16 20 N -0.38 -16.23 3.64 -353.33 -1.28 -17.51 16 21 C 0.20 6.88 7.01 85.63 0.60 7.48 16 22 C -0.19 -6.81 6.09 24.59 0.15 -6.66 16 23 C -0.13 -4.28 10.05 21.21 0.21 -4.06 16 24 C -0.15 -4.47 10.18 21.22 0.22 -4.25 16 25 C -0.24 -7.31 11.23 66.72 0.75 -6.56 16 26 S 0.15 5.04 22.69 -56.49 -1.28 3.76 16 27 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 28 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 30 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 31 H 0.12 3.56 8.14 -2.39 -0.02 3.54 16 32 H 0.09 2.85 7.98 -2.39 -0.02 2.83 16 33 H 0.06 1.90 8.00 -2.39 -0.02 1.88 16 34 H 0.25 13.85 8.32 -92.71 -0.77 13.08 16 35 H 0.11 3.42 8.10 -2.39 -0.02 3.40 16 36 H 0.13 3.49 8.14 -2.39 -0.02 3.47 16 37 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 38 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 39 H 0.18 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -63.04 361.56 6.35 -56.69 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 1.08 Total: 18.07 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: 6.81 Total: 21.43 kcal Atomic # 7 Polarization: -112.96 SS G_CDS: -2.08 Total: -115.04 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.20 Total: -27.02 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.11 kcal Atomic # 16 Polarization: 5.04 SS G_CDS: -1.28 Total: 3.76 kcal Total: -63.04 6.35 -56.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340249665.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.304 kcal (2) G-P(sol) polarization free energy of solvation -63.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds