Wall clock time and date at job start Tue Mar 31 2020 20:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.26898 * 2 1 4 4 C 1.53736 * 110.29855 * 122.05982 * 2 1 3 5 5 C 1.51223 * 104.59378 * 119.02933 * 4 2 1 6 6 C 1.38191 * 130.94847 * 179.97438 * 5 4 2 7 7 C 1.38323 * 120.13614 * 180.02562 * 6 5 4 8 8 Cl 1.73604 * 120.10169 * 179.97438 * 7 6 5 9 9 C 1.38406 * 119.80060 * 359.68111 * 7 6 5 10 10 C 1.37836 * 120.20329 * 0.61154 * 9 7 6 11 11 C 1.38538 * 108.56721 * 359.97438 * 5 4 2 12 12 N 1.39913 * 111.60740 * 0.02562 * 11 5 4 13 13 C 1.34777 * 124.98420 * 179.97438 * 12 11 5 14 14 O 1.21592 * 120.00011 * 355.92211 * 13 12 11 15 15 N 1.34783 * 119.99886 * 175.92485 * 13 12 11 16 16 C 1.46494 * 119.99666 * 185.32383 * 15 13 12 17 17 C 1.50703 * 109.46726 * 180.02562 * 16 15 13 18 18 O 1.21286 * 119.99995 * 0.02562 * 17 16 15 19 19 N 1.34781 * 119.99937 * 179.97438 * 17 16 15 20 20 C 1.37092 * 120.00233 * 179.97438 * 19 17 16 21 21 H 1.08005 * 119.99724 * 0.02562 * 20 19 17 22 22 C 1.38947 * 120.00265 * 180.02562 * 20 19 17 23 23 N 1.31413 * 120.00093 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99946 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47329 * 60.00218 * 24 22 20 26 26 H 1.48507 * 109.47044 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46966 * 299.99732 * 24 22 20 28 28 H 1.09005 * 109.46972 * 297.94166 * 1 2 3 29 29 H 1.08998 * 109.47339 * 57.93534 * 1 2 3 30 30 H 1.08996 * 109.47262 * 177.94400 * 1 2 3 31 31 H 1.08999 * 110.41169 * 0.25121 * 4 2 1 32 32 H 1.08998 * 110.41637 * 237.80319 * 4 2 1 33 33 H 1.07994 * 119.93389 * 0.03486 * 6 5 4 34 34 H 1.07996 * 119.89708 * 180.29156 * 9 7 6 35 35 H 1.07994 * 119.84604 * 179.68344 * 10 9 7 36 36 H 0.96996 * 119.99917 * 5.32978 * 15 13 12 37 37 H 1.08999 * 109.47477 * 300.00128 * 16 15 13 38 38 H 1.08997 * 109.47330 * 60.00220 * 16 15 13 39 39 H 0.97001 * 119.99696 * 0.02562 * 19 17 16 40 40 H 0.96994 * 120.00103 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0225 0.0000 4 6 2.0633 -0.7654 1.2220 5 6 2.8615 -1.9087 0.6369 6 6 3.5707 -2.9247 1.2489 7 6 4.2309 -3.8693 0.4839 8 17 5.1220 -5.1449 1.2537 9 6 4.1738 -3.7980 -0.8972 10 6 3.4723 -2.7825 -1.5107 11 6 2.8036 -1.8255 -0.7448 12 7 2.0399 -0.7305 -1.1635 13 6 1.8076 -0.3964 -2.4483 14 8 2.3373 -1.0240 -3.3450 15 7 0.9882 0.6335 -2.7393 16 6 0.6432 0.9237 -4.1331 17 6 -0.2788 2.1146 -4.1847 18 8 -0.6142 2.6669 -3.1583 19 7 -0.7299 2.5667 -5.3716 20 6 -1.5690 3.6498 -5.4187 21 1 -1.8684 4.1410 -4.5045 22 6 -2.0344 4.1155 -6.6422 23 7 -1.6706 3.5175 -7.7544 24 14 -3.1773 5.5918 -6.7062 25 1 -2.4985 6.7697 -6.1088 26 1 -3.5276 5.8857 -8.1191 27 1 -4.4149 5.2931 -5.9418 28 1 -0.3633 0.4816 0.9079 29 1 -0.3634 0.5455 -0.8709 30 1 -0.3633 -1.0270 -0.0369 31 1 1.2371 -1.1465 1.8221 32 1 2.7057 -0.1218 1.8230 33 1 3.6095 -2.9814 2.3266 34 1 4.6847 -4.5375 -1.4959 35 1 3.4358 -2.7295 -2.5887 36 1 0.6271 1.1824 -2.0258 37 1 1.5515 1.1433 -4.6942 38 1 0.1453 0.0590 -4.5718 39 1 -0.4613 2.1253 -6.1926 40 1 -1.9952 3.8429 -8.6086 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345895315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:48 Heat of formation + Delta-G solvation = -36.346278 kcal Electronic energy + Delta-G solvation = -25991.159031 eV Core-core repulsion = 22024.860701 eV Total energy + Delta-G solvation = -3966.298330 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.56996 -39.32976 -38.22622 -37.31891 -36.22043 -34.64756 -33.83034 -32.72867 -31.47437 -31.12334 -30.01013 -27.51518 -26.81208 -24.71720 -23.28075 -22.28196 -21.74029 -20.23299 -19.71041 -18.49936 -17.95350 -16.98636 -16.52864 -16.11865 -15.87339 -15.27988 -15.19701 -15.09275 -14.57772 -14.26100 -14.08541 -14.05972 -13.74232 -13.57739 -13.22224 -13.13952 -12.79880 -12.48021 -12.30593 -12.14089 -11.83318 -11.78093 -11.68071 -11.62673 -11.40835 -11.15039 -11.00318 -10.55149 -10.37160 -10.17939 -10.16091 -9.68652 -9.13529 -9.00130 -8.71594 -8.16583 -7.88313 -6.56834 -3.99258 0.93482 1.05637 1.92722 2.31328 2.98515 3.09615 3.18203 3.21464 3.49979 3.66482 3.67621 4.06120 4.16535 4.24323 4.62925 4.67274 4.77749 4.81163 4.94523 5.02560 5.11480 5.20318 5.29864 5.37258 5.50557 5.61630 5.68581 5.72959 5.83731 5.87548 5.96336 5.98143 6.02390 6.10035 6.17249 6.53015 6.63700 6.95333 7.40504 7.83848 7.85444 8.37482 8.45426 8.98387 9.32336 9.79645 10.59744 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.033127 B = 0.002099 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.032152 B =13334.675493 C =14083.855233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.122 3.878 3 H 0.094 0.906 4 C -0.077 4.077 5 C -0.135 4.135 6 C -0.067 4.067 7 C -0.066 4.066 8 Cl -0.076 7.076 9 C -0.080 4.080 10 C -0.124 4.124 11 C 0.185 3.815 12 N -0.564 5.564 13 C 0.717 3.283 14 O -0.573 6.573 15 N -0.715 5.715 16 C 0.124 3.876 17 C 0.427 3.573 18 O -0.599 6.599 19 N -0.546 5.546 20 C -0.307 4.307 21 H 0.105 0.895 22 C 0.027 3.973 23 N -0.893 5.893 24 Si 0.935 3.065 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.272 1.272 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.151 0.849 36 H 0.410 0.590 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.396 0.604 40 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.367 -12.447 16.855 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.020 3.980 3 H 0.112 0.888 4 C -0.114 4.114 5 C -0.139 4.139 6 C -0.086 4.086 7 C -0.094 4.094 8 Cl -0.047 7.047 9 C -0.099 4.099 10 C -0.146 4.146 11 C 0.087 3.913 12 N -0.289 5.289 13 C 0.419 3.581 14 O -0.450 6.450 15 N -0.375 5.375 16 C -0.004 4.004 17 C 0.212 3.788 18 O -0.486 6.486 19 N -0.180 5.180 20 C -0.436 4.436 21 H 0.123 0.877 22 C -0.177 4.177 23 N -0.533 5.533 24 Si 0.761 3.239 25 H -0.197 1.197 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.169 0.831 36 H 0.252 0.748 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.230 0.770 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.412 -12.430 16.538 22.729 hybrid contribution -0.516 0.647 -0.343 0.896 sum 8.896 -11.782 16.195 21.914 Atomic orbital electron populations 1.22400 0.93103 1.03531 1.04175 1.21821 0.95671 0.96691 0.83862 0.88773 1.21160 0.99334 0.94200 0.96681 1.19835 1.02830 0.98736 0.92535 1.20093 0.96115 0.92471 0.99904 1.20589 1.02023 0.93909 0.92874 1.98354 1.74386 1.50416 1.81567 1.20809 0.98595 0.98185 0.92323 1.20951 0.98421 0.93478 1.01706 1.18219 0.92305 0.88126 0.92603 1.45186 1.50935 1.27468 1.05293 1.15514 0.80159 0.81417 0.81040 1.90892 1.54074 1.55626 1.44431 1.45090 1.50138 1.32033 1.10203 1.20897 0.99653 0.98263 0.81618 1.19665 0.86554 0.87475 0.85081 1.90486 1.63228 1.61337 1.33531 1.41772 1.41560 1.28093 1.06591 1.19677 1.22978 1.06291 0.94647 0.87673 1.25342 0.98334 0.99335 0.94660 1.69602 1.44487 1.41035 0.98152 0.85861 0.80056 0.80745 0.77238 1.19743 1.20819 1.19749 0.90068 0.90542 0.91524 0.88592 0.88769 0.84809 0.84528 0.83101 0.74839 0.89599 0.89715 0.76971 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 8.92 37.16 0.33 -1.38 16 2 C 0.12 1.23 3.32 -67.53 -0.22 1.00 16 3 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.08 -0.60 6.58 -27.24 -0.18 -0.78 16 5 C -0.14 -1.38 6.23 -104.27 -0.65 -2.03 16 6 C -0.07 -0.62 9.82 -39.57 -0.39 -1.01 16 7 C -0.07 -0.66 6.32 -39.49 -0.25 -0.91 16 8 Cl -0.08 -0.69 28.96 -51.86 -1.50 -2.19 16 9 C -0.08 -0.84 9.81 -39.67 -0.39 -1.23 16 10 C -0.12 -1.58 9.46 -39.21 -0.37 -1.95 16 11 C 0.19 2.37 6.62 -83.54 -0.55 1.81 16 12 N -0.56 -7.55 2.89 -111.14 -0.32 -7.87 16 13 C 0.72 11.71 8.23 -86.91 -0.72 10.99 16 14 O -0.57 -10.72 14.53 5.28 0.08 -10.65 16 15 N -0.72 -11.79 5.03 -66.42 -0.33 -12.12 16 16 C 0.12 2.21 6.16 -5.20 -0.03 2.18 16 17 C 0.43 9.44 7.85 -10.98 -0.09 9.36 16 18 O -0.60 -14.69 15.24 5.55 0.08 -14.60 16 19 N -0.55 -13.14 5.29 -10.96 -0.06 -13.20 16 20 C -0.31 -8.12 9.68 -14.94 -0.14 -8.26 16 21 H 0.11 2.89 7.16 -52.48 -0.38 2.51 16 22 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 23 N -0.89 -23.38 13.05 55.50 0.72 -22.65 16 24 Si 0.93 20.11 29.55 -169.99 -5.02 15.09 16 25 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 27 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.95 5.56 -51.93 -0.29 0.66 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.10 0.59 7.70 -51.93 -0.40 0.19 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 35 H 0.15 2.14 6.29 -52.49 -0.33 1.81 16 36 H 0.41 6.58 4.32 -40.82 -0.18 6.40 16 37 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.40 9.19 7.90 -40.82 -0.32 8.87 16 40 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 352.58 15.07 5.31 5.31 Total: -1.00 -30.34 352.58 -9.20 -39.54 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -4.41 Total: 14.95 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: -3.75 Total: 8.39 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.01 Total: -55.85 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: 0.16 Total: -25.25 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.19 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.34 -9.20 -39.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345895315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.193 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds