Wall clock time and date at job start Tue Mar 31 2020 20:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.26898 * 2 1 4 4 C 1.53736 * 110.29855 * 122.05982 * 2 1 3 5 5 C 1.51223 * 104.59378 * 119.02933 * 4 2 1 6 6 C 1.38191 * 130.94847 * 179.97438 * 5 4 2 7 7 C 1.38323 * 120.13614 * 180.02562 * 6 5 4 8 8 Cl 1.73604 * 120.10169 * 179.97438 * 7 6 5 9 9 C 1.38406 * 119.80060 * 359.68111 * 7 6 5 10 10 C 1.37836 * 120.20329 * 0.61154 * 9 7 6 11 11 C 1.38538 * 108.56721 * 359.97438 * 5 4 2 12 12 N 1.39913 * 111.60740 * 0.02562 * 11 5 4 13 13 C 1.34777 * 124.98420 * 179.97438 * 12 11 5 14 14 O 1.21592 * 120.00011 * 355.92211 * 13 12 11 15 15 N 1.34783 * 119.99886 * 175.92485 * 13 12 11 16 16 C 1.46494 * 119.99666 * 185.32383 * 15 13 12 17 17 C 1.50703 * 109.46726 * 180.02562 * 16 15 13 18 18 O 1.21286 * 119.99995 * 0.02562 * 17 16 15 19 19 N 1.34781 * 119.99937 * 179.97438 * 17 16 15 20 20 C 1.37092 * 120.00233 * 179.97438 * 19 17 16 21 21 H 1.08005 * 119.99724 * 0.02562 * 20 19 17 22 22 C 1.38947 * 120.00265 * 180.02562 * 20 19 17 23 23 N 1.31413 * 120.00093 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99946 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47329 * 60.00218 * 24 22 20 26 26 H 1.48507 * 109.47044 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46966 * 299.99732 * 24 22 20 28 28 H 1.09005 * 109.46972 * 297.94166 * 1 2 3 29 29 H 1.08998 * 109.47339 * 57.93534 * 1 2 3 30 30 H 1.08996 * 109.47262 * 177.94400 * 1 2 3 31 31 H 1.08999 * 110.41169 * 0.25121 * 4 2 1 32 32 H 1.08998 * 110.41637 * 237.80319 * 4 2 1 33 33 H 1.07994 * 119.93389 * 0.03486 * 6 5 4 34 34 H 1.07996 * 119.89708 * 180.29156 * 9 7 6 35 35 H 1.07994 * 119.84604 * 179.68344 * 10 9 7 36 36 H 0.96996 * 119.99917 * 5.32978 * 15 13 12 37 37 H 1.08999 * 109.47477 * 300.00128 * 16 15 13 38 38 H 1.08997 * 109.47330 * 60.00220 * 16 15 13 39 39 H 0.97001 * 119.99696 * 0.02562 * 19 17 16 40 40 H 0.96994 * 120.00103 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0225 0.0000 4 6 2.0633 -0.7654 1.2220 5 6 2.8615 -1.9087 0.6369 6 6 3.5707 -2.9247 1.2489 7 6 4.2309 -3.8693 0.4839 8 17 5.1220 -5.1449 1.2537 9 6 4.1738 -3.7980 -0.8972 10 6 3.4723 -2.7825 -1.5107 11 6 2.8036 -1.8255 -0.7448 12 7 2.0399 -0.7305 -1.1635 13 6 1.8076 -0.3964 -2.4483 14 8 2.3373 -1.0240 -3.3450 15 7 0.9882 0.6335 -2.7393 16 6 0.6432 0.9237 -4.1331 17 6 -0.2788 2.1146 -4.1847 18 8 -0.6142 2.6669 -3.1583 19 7 -0.7299 2.5667 -5.3716 20 6 -1.5690 3.6498 -5.4187 21 1 -1.8684 4.1410 -4.5045 22 6 -2.0344 4.1155 -6.6422 23 7 -1.6706 3.5175 -7.7544 24 14 -3.1773 5.5918 -6.7062 25 1 -2.4985 6.7697 -6.1088 26 1 -3.5276 5.8857 -8.1191 27 1 -4.4149 5.2931 -5.9418 28 1 -0.3633 0.4816 0.9079 29 1 -0.3634 0.5455 -0.8709 30 1 -0.3633 -1.0270 -0.0369 31 1 1.2371 -1.1465 1.8221 32 1 2.7057 -0.1218 1.8230 33 1 3.6095 -2.9814 2.3266 34 1 4.6847 -4.5375 -1.4959 35 1 3.4358 -2.7295 -2.5887 36 1 0.6271 1.1824 -2.0258 37 1 1.5515 1.1433 -4.6942 38 1 0.1453 0.0590 -4.5718 39 1 -0.4613 2.1253 -6.1926 40 1 -1.9952 3.8429 -8.6086 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345895315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:48 Heat of formation + Delta-G solvation = -54.651355 kcal Electronic energy + Delta-G solvation = -25991.952799 eV Core-core repulsion = 22024.860701 eV Total energy + Delta-G solvation = -3967.092098 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.54846 -40.65366 -39.79743 -38.22092 -37.04660 -36.31299 -35.45185 -33.63508 -33.38803 -31.98856 -30.98116 -28.99980 -27.56402 -26.49481 -24.35704 -23.12505 -22.54987 -21.46665 -21.34770 -20.13996 -19.40047 -18.02452 -17.54702 -17.38946 -17.10234 -16.72462 -16.48511 -16.30998 -16.10465 -15.59533 -15.47235 -15.25725 -14.87814 -14.51305 -14.11363 -13.94952 -13.89173 -13.78680 -13.55166 -13.54469 -13.14463 -12.91275 -12.70339 -12.60929 -12.47654 -12.42128 -12.19919 -12.14220 -11.83628 -11.57164 -11.40214 -11.04322 -10.58995 -10.36245 -10.10905 -9.91590 -8.79659 -8.51749 -6.02136 0.06366 0.24248 1.08720 1.25973 1.37423 1.43302 1.54079 1.79600 1.89931 2.25651 2.57205 2.62203 3.08344 3.15343 3.40445 3.44383 3.88099 3.93463 4.00783 4.12013 4.18526 4.23781 4.32285 4.37882 4.38806 4.59937 4.67536 4.83302 4.86231 4.93460 5.04516 5.09965 5.18660 5.22245 5.26895 5.34007 5.37470 5.72717 5.89491 5.90769 6.45632 6.62523 7.01835 7.19019 7.42187 7.91460 8.64742 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.033127 B = 0.002099 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.032152 B =13334.675493 C =14083.855233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.114 3.886 3 H 0.100 0.900 4 C -0.067 4.067 5 C -0.125 4.125 6 C -0.062 4.062 7 C -0.066 4.066 8 Cl -0.064 7.064 9 C -0.082 4.082 10 C -0.143 4.143 11 C 0.150 3.850 12 N -0.564 5.564 13 C 0.714 3.286 14 O -0.605 6.605 15 N -0.715 5.715 16 C 0.136 3.864 17 C 0.434 3.566 18 O -0.622 6.622 19 N -0.557 5.557 20 C -0.337 4.337 21 H 0.088 0.912 22 C -0.011 4.011 23 N -0.915 5.915 24 Si 0.997 3.003 25 H -0.269 1.269 26 H -0.273 1.273 27 H -0.269 1.269 28 H 0.109 0.891 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.164 0.836 34 H 0.149 0.851 35 H 0.127 0.873 36 H 0.413 0.587 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.399 0.601 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.524 -12.640 19.250 24.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.012 3.988 3 H 0.118 0.882 4 C -0.104 4.104 5 C -0.128 4.128 6 C -0.080 4.080 7 C -0.094 4.094 8 Cl -0.035 7.035 9 C -0.102 4.102 10 C -0.164 4.164 11 C 0.054 3.946 12 N -0.289 5.289 13 C 0.416 3.584 14 O -0.484 6.484 15 N -0.375 5.375 16 C 0.008 3.992 17 C 0.221 3.779 18 O -0.510 6.510 19 N -0.192 5.192 20 C -0.466 4.466 21 H 0.106 0.894 22 C -0.212 4.212 23 N -0.555 5.555 24 Si 0.820 3.180 25 H -0.194 1.194 26 H -0.198 1.198 27 H -0.194 1.194 28 H 0.127 0.873 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.181 0.819 34 H 0.167 0.833 35 H 0.144 0.856 36 H 0.255 0.745 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.233 0.767 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.587 -12.649 18.976 24.738 hybrid contribution -0.479 0.591 -0.987 1.246 sum 9.108 -12.058 17.989 23.494 Atomic orbital electron populations 1.22364 0.93019 1.03088 1.04158 1.22130 0.95780 0.97190 0.83680 0.88161 1.21265 1.00130 0.93317 0.95707 1.20116 1.02199 0.99206 0.91311 1.20408 0.94896 0.91444 1.01295 1.20728 1.01718 0.94232 0.92705 1.98363 1.74080 1.49903 1.81194 1.20904 0.98321 0.97859 0.93073 1.20870 0.99902 0.94851 1.00783 1.18532 0.93539 0.88506 0.94045 1.45201 1.50880 1.27938 1.04874 1.15615 0.79819 0.80956 0.82006 1.90867 1.55207 1.56492 1.45883 1.45006 1.50510 1.32461 1.09495 1.20697 0.98967 0.96544 0.82970 1.20277 0.85834 0.87708 0.84131 1.90462 1.63938 1.62312 1.34254 1.41817 1.42000 1.28145 1.07262 1.19706 1.24651 1.07668 0.94564 0.89363 1.26148 0.99354 1.01693 0.94001 1.69674 1.45176 1.42122 0.98553 0.84920 0.78044 0.77386 0.77602 1.19438 1.19770 1.19408 0.87256 0.93477 0.91888 0.86147 0.86066 0.81875 0.83347 0.85556 0.74500 0.88739 0.88656 0.76693 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 8.92 71.98 0.64 -2.43 16 2 C 0.11 2.09 3.32 45.23 0.15 2.24 16 3 H 0.10 1.71 8.14 -2.39 -0.02 1.70 16 4 C -0.07 -0.81 6.58 30.26 0.20 -0.61 16 5 C -0.12 -2.23 6.23 -19.64 -0.12 -2.35 16 6 C -0.06 -0.95 9.82 22.28 0.22 -0.74 16 7 C -0.07 -1.19 6.32 22.33 0.14 -1.05 16 8 Cl -0.06 -1.02 28.96 -2.72 -0.08 -1.10 16 9 C -0.08 -1.70 9.81 22.21 0.22 -1.48 16 10 C -0.14 -3.72 9.46 22.51 0.21 -3.50 16 11 C 0.15 3.77 6.62 38.26 0.25 4.03 16 12 N -0.56 -14.99 2.89 -623.80 -1.80 -16.79 16 13 C 0.71 23.84 8.23 179.05 1.47 25.31 16 14 O -0.60 -23.51 14.53 -4.01 -0.06 -23.57 16 15 N -0.71 -23.96 5.03 -482.30 -2.43 -26.39 16 16 C 0.14 4.97 6.16 85.64 0.53 5.49 16 17 C 0.43 19.57 7.85 87.66 0.69 20.26 16 18 O -0.62 -31.04 15.24 -3.05 -0.05 -31.09 16 19 N -0.56 -27.45 5.29 -306.99 -1.62 -29.07 16 20 C -0.34 -18.17 9.68 84.04 0.81 -17.36 16 21 H 0.09 4.98 7.16 -2.91 -0.02 4.95 16 22 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 23 N -0.92 -48.09 13.05 21.66 0.28 -47.80 16 24 Si 1.00 41.04 29.55 68.60 2.03 43.07 16 25 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 26 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 27 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 28 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.05 1.16 5.56 -2.39 -0.01 1.14 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.12 0.94 7.70 -2.39 -0.02 0.92 16 32 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 34 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 35 H 0.13 3.87 6.29 -2.91 -0.02 3.85 16 36 H 0.41 13.44 4.32 -92.71 -0.40 13.04 16 37 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 38 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 39 H 0.40 18.96 7.90 -92.71 -0.73 18.23 16 40 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -66.65 352.58 2.14 -64.51 By element: Atomic # 1 Polarization: 40.54 SS G_CDS: -0.02 Total: 40.52 kcal Atomic # 6 Polarization: 21.82 SS G_CDS: 5.88 Total: 27.71 kcal Atomic # 7 Polarization: -114.48 SS G_CDS: -5.57 Total: -120.05 kcal Atomic # 8 Polarization: -54.55 SS G_CDS: -0.10 Total: -54.66 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -66.65 2.14 -64.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345895315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.855 kcal (2) G-P(sol) polarization free energy of solvation -66.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds