Wall clock time and date at job start Tue Mar 31 2020 20:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45195 * 109.47281 * 2 1 4 4 C 1.34711 * 117.00039 * 179.97438 * 3 2 1 5 5 O 1.21467 * 120.00066 * 0.02562 * 4 3 2 6 6 C 1.47744 * 119.99702 * 180.02562 * 4 3 2 7 7 C 1.39369 * 120.07278 * 180.02562 * 6 4 3 8 8 C 1.39336 * 119.69855 * 180.02562 * 7 6 4 9 9 C 1.47739 * 120.07979 * 180.02562 * 8 7 6 10 10 O 1.21473 * 120.00059 * 359.97438 * 9 8 7 11 11 O 1.34713 * 120.00032 * 179.97438 * 9 8 7 12 12 C 1.45202 * 116.99844 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.46971 * 30.00304 * 12 11 9 14 14 C 1.52996 * 109.47175 * 270.00117 * 12 11 9 15 15 C 1.50698 * 109.46697 * 149.99688 * 12 11 9 16 16 H 1.08003 * 120.00248 * 35.00756 * 15 12 11 17 17 C 1.37879 * 120.00061 * 214.99746 * 15 12 11 18 18 N 1.31514 * 120.00065 * 184.92370 * 17 15 12 19 19 Si 1.86799 * 120.00086 * 4.91820 * 17 15 12 20 20 H 1.48496 * 109.46932 * 84.83083 * 19 17 15 21 21 H 1.48491 * 109.47212 * 204.83377 * 19 17 15 22 22 H 1.48507 * 109.46996 * 324.83552 * 19 17 15 23 23 C 1.39769 * 119.84491 * 0.26650 * 8 7 6 24 24 C 1.38054 * 120.14943 * 359.44974 * 23 8 7 25 25 N 1.48013 * 119.84591 * 180.27942 * 24 23 8 26 26 O 1.21799 * 119.99756 * 180.27663 * 25 24 23 27 27 O 1.21794 * 120.00340 * 0.27750 * 25 24 23 28 28 C 1.38095 * 120.30306 * 0.55469 * 24 23 8 29 29 H 1.08998 * 109.46737 * 299.99387 * 1 2 3 30 30 H 1.09000 * 109.46773 * 59.99775 * 1 2 3 31 31 H 1.09003 * 109.46590 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46772 * 240.00336 * 2 1 3 33 33 H 1.09002 * 109.46941 * 120.00747 * 2 1 3 34 34 H 1.08003 * 120.15518 * 359.97438 * 7 6 4 35 35 H 1.08992 * 109.47218 * 295.03411 * 14 12 11 36 36 H 1.09005 * 109.46733 * 175.03555 * 14 12 11 37 37 H 1.09000 * 109.47120 * 55.03506 * 14 12 11 38 38 H 0.96997 * 119.99915 * 179.97438 * 18 17 15 39 39 H 1.07999 * 119.92589 * 179.70761 * 23 8 7 40 40 H 1.08007 * 119.92154 * 179.74536 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3496 1.5454 0.0005 5 8 4.0895 0.5821 0.0005 6 6 3.9143 2.9107 0.0011 7 6 5.2957 3.0951 0.0012 8 6 5.8198 4.3861 0.0023 9 6 7.2829 4.5913 0.0017 10 8 8.0305 3.6339 0.0008 11 8 7.7879 5.8402 0.0023 12 6 9.2344 5.9663 0.0023 13 1 9.6736 5.1115 -0.5120 14 6 9.7425 6.0099 1.4447 15 6 9.6278 7.2361 -0.7076 16 1 9.0067 8.1158 -0.6248 17 6 10.7808 7.2749 -1.4628 18 7 11.1755 8.4073 -2.0026 19 14 11.7823 5.7190 -1.7189 20 1 11.2243 4.9538 -2.8626 21 1 13.1935 6.0805 -2.0065 22 1 11.7252 4.8858 -0.4909 23 6 4.9582 5.4866 0.0090 24 6 3.5908 5.2966 0.0031 25 7 2.6845 6.4669 0.0040 26 8 1.4777 6.3025 0.0039 27 8 3.1455 7.5942 0.0049 28 6 3.0646 4.0198 0.0020 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5140 0.8899 34 1 5.9570 2.2412 0.0011 35 1 9.3739 6.9121 1.9327 36 1 10.8326 6.0157 1.4459 37 1 9.3832 5.1330 1.9832 38 1 11.9868 8.4346 -2.5336 39 1 5.3630 6.4878 0.0147 40 1 1.9939 3.8784 0.0015 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346026239.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:07 Heat of formation + Delta-G solvation = -148.236637 kcal Electronic energy + Delta-G solvation = -28363.531382 eV Core-core repulsion = 23919.379206 eV Total energy + Delta-G solvation = -4444.152176 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.43530 -41.19916 -40.26669 -38.95473 -37.11095 -36.75671 -36.16017 -33.36947 -32.86159 -32.54884 -31.83611 -30.62451 -26.89990 -25.59952 -25.58923 -24.99209 -23.24008 -21.94805 -21.55002 -20.24227 -19.27053 -18.96216 -18.11814 -17.74752 -17.58254 -17.15168 -17.08926 -16.92740 -16.54571 -15.98387 -15.64009 -15.38311 -14.73015 -14.44736 -14.08989 -13.52383 -13.28309 -13.18582 -12.90296 -12.78008 -12.74068 -12.51659 -12.46085 -12.12022 -11.96532 -11.74132 -11.51794 -11.29207 -11.27196 -11.13971 -11.12495 -11.05130 -10.84525 -10.42697 -10.22531 -9.98413 -9.97453 -9.72288 -9.30053 -8.83960 -6.38772 -4.44254 -0.54572 -0.25687 0.77705 1.03305 1.73730 1.92745 2.47166 2.91205 3.14502 3.16644 3.21149 3.25145 3.71222 3.94889 4.12073 4.15457 4.25765 4.40589 4.44078 4.44646 4.50415 4.77943 4.88615 5.03118 5.11119 5.17153 5.29211 5.33956 5.46759 5.54969 5.58547 5.85457 5.99224 6.10344 6.26950 6.33982 6.49374 6.98900 7.06701 7.13349 7.33099 7.41917 7.96572 8.32833 8.70942 9.18567 10.71978 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.013323 B = 0.003013 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.163763 B = 9291.479942 C =10910.922239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 O -0.352 6.352 4 C 0.518 3.482 5 O -0.489 6.489 6 C -0.135 4.135 7 C 0.047 3.953 8 C -0.114 4.114 9 C 0.498 3.502 10 O -0.505 6.505 11 O -0.338 6.338 12 C 0.183 3.817 13 H 0.050 0.950 14 C -0.154 4.154 15 C -0.522 4.522 16 H 0.089 0.911 17 C 0.084 3.916 18 N -0.875 5.875 19 Si 0.868 3.132 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.260 1.260 23 C 0.033 3.967 24 C -0.066 4.066 25 N 0.029 4.971 26 O -0.156 6.156 27 O -0.139 6.139 28 C 0.022 3.978 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.172 0.828 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.030 0.970 38 H 0.272 0.728 39 H 0.183 0.817 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.903 -14.064 4.726 24.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 O -0.269 6.269 4 C 0.362 3.638 5 O -0.377 6.377 6 C -0.137 4.137 7 C 0.029 3.971 8 C -0.116 4.116 9 C 0.341 3.659 10 O -0.396 6.396 11 O -0.253 6.253 12 C 0.131 3.869 13 H 0.068 0.932 14 C -0.212 4.212 15 C -0.558 4.558 16 H 0.107 0.893 17 C -0.121 4.121 18 N -0.511 5.511 19 Si 0.694 3.306 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.184 1.184 23 C 0.014 3.986 24 C -0.149 4.149 25 N 0.551 4.449 26 O -0.372 6.372 27 O -0.358 6.358 28 C 0.003 3.997 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.190 0.810 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.049 0.951 38 H 0.082 0.918 39 H 0.200 0.800 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -18.859 -15.100 4.607 24.595 hybrid contribution 0.516 -0.631 -0.267 0.858 sum -18.343 -15.731 4.340 24.551 Atomic orbital electron populations 1.21837 0.92100 1.03298 1.03881 1.23161 0.95653 0.79066 1.03127 1.86522 1.22892 1.33413 1.84030 1.20537 0.81171 0.88741 0.73371 1.90910 1.60341 1.41633 1.44813 1.18792 0.92919 0.90505 1.11452 1.21854 0.93653 0.98007 0.83617 1.19311 0.92627 0.92306 1.07401 1.20597 0.87376 0.83935 0.73996 1.90824 1.60047 1.42591 1.46122 1.86756 1.31120 1.26465 1.81005 1.21169 0.71818 0.98908 0.95052 0.93211 1.22255 1.01473 1.00113 0.97329 1.20772 1.08770 0.95408 1.30886 0.89336 1.24918 0.97033 0.96387 0.93802 1.69842 1.23745 1.25371 1.32143 0.86978 0.79932 0.83686 0.80003 1.19491 1.20529 1.18438 1.21790 0.89627 1.02924 0.84223 1.20881 0.90502 0.86447 1.17090 1.43401 1.01430 1.02182 0.97875 1.94544 0.96716 1.92456 1.53434 1.94631 1.80429 1.08252 1.52493 1.21462 1.02915 0.88685 0.86683 0.91206 0.91193 0.89907 0.90728 0.90742 0.81031 0.92111 0.91647 0.95070 0.91767 0.80013 0.80938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 10.29 37.16 0.38 -0.25 16 2 C 0.06 0.41 6.19 37.16 0.23 0.64 16 3 O -0.35 -3.01 9.46 -40.52 -0.38 -3.39 16 4 C 0.52 5.38 7.90 34.62 0.27 5.65 16 5 O -0.49 -6.25 16.13 -19.24 -0.31 -6.56 16 6 C -0.13 -1.37 5.87 -105.04 -0.62 -1.99 16 7 C 0.05 0.56 9.14 -38.75 -0.35 0.20 16 8 C -0.11 -1.56 5.87 -105.03 -0.62 -2.18 16 9 C 0.50 9.08 7.87 34.61 0.27 9.36 16 10 O -0.51 -10.29 15.60 -19.25 -0.30 -10.60 16 11 O -0.34 -7.05 9.11 -40.53 -0.37 -7.42 16 12 C 0.18 4.29 2.22 -27.89 -0.06 4.23 16 13 H 0.05 1.22 4.31 -51.93 -0.22 1.00 16 14 C -0.15 -3.20 9.53 37.16 0.35 -2.84 16 15 C -0.52 -14.05 9.25 -34.44 -0.32 -14.36 16 16 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 17 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 18 N -0.88 -25.17 13.96 55.43 0.77 -24.40 16 19 Si 0.87 20.55 26.99 -169.99 -4.59 15.96 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.26 -5.96 6.82 56.52 0.39 -5.57 16 23 C 0.03 0.42 9.12 -39.08 -0.36 0.06 16 24 C -0.07 -0.76 6.84 -80.07 -0.55 -1.30 16 25 N 0.03 0.38 4.45 33.90 0.15 0.53 16 26 O -0.16 -2.00 18.43 -29.46 -0.54 -2.55 16 27 O -0.14 -2.01 18.43 -29.46 -0.54 -2.55 16 28 C 0.02 0.21 9.12 -39.08 -0.36 -0.15 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.17 2.08 7.23 -52.48 -0.38 1.70 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.18 2.35 7.13 -52.49 -0.37 1.98 16 40 H 0.17 1.30 7.13 -52.48 -0.37 0.93 16 LS Contribution 365.56 15.07 5.51 5.51 Total: -1.00 -30.93 365.56 -6.72 -37.65 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -4.31 Total: -1.44 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -1.81 Total: -0.74 kcal Atomic # 7 Polarization: -24.80 SS G_CDS: 0.92 Total: -23.87 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -2.45 Total: -33.06 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.59 Total: 15.96 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.93 -6.72 -37.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346026239.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.584 kcal (2) G-P(sol) polarization free energy of solvation -30.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds