Wall clock time and date at job start Tue Mar 31 2020 20:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45195 * 109.47281 * 2 1 4 4 C 1.34711 * 117.00039 * 179.97438 * 3 2 1 5 5 O 1.21467 * 120.00066 * 0.02562 * 4 3 2 6 6 C 1.47744 * 119.99702 * 180.02562 * 4 3 2 7 7 C 1.39369 * 120.07278 * 180.02562 * 6 4 3 8 8 C 1.39336 * 119.69855 * 180.02562 * 7 6 4 9 9 C 1.47739 * 120.07979 * 180.02562 * 8 7 6 10 10 O 1.21473 * 120.00059 * 359.97438 * 9 8 7 11 11 O 1.34713 * 120.00032 * 179.97438 * 9 8 7 12 12 C 1.45202 * 116.99844 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.46971 * 30.00304 * 12 11 9 14 14 C 1.52996 * 109.47175 * 270.00117 * 12 11 9 15 15 C 1.50698 * 109.46697 * 149.99688 * 12 11 9 16 16 H 1.08003 * 120.00248 * 35.00756 * 15 12 11 17 17 C 1.37879 * 120.00061 * 214.99746 * 15 12 11 18 18 N 1.31514 * 120.00065 * 184.92370 * 17 15 12 19 19 Si 1.86799 * 120.00086 * 4.91820 * 17 15 12 20 20 H 1.48496 * 109.46932 * 84.83083 * 19 17 15 21 21 H 1.48491 * 109.47212 * 204.83377 * 19 17 15 22 22 H 1.48507 * 109.46996 * 324.83552 * 19 17 15 23 23 C 1.39769 * 119.84491 * 0.26650 * 8 7 6 24 24 C 1.38054 * 120.14943 * 359.44974 * 23 8 7 25 25 N 1.48013 * 119.84591 * 180.27942 * 24 23 8 26 26 O 1.21799 * 119.99756 * 180.27663 * 25 24 23 27 27 O 1.21794 * 120.00340 * 0.27750 * 25 24 23 28 28 C 1.38095 * 120.30306 * 0.55469 * 24 23 8 29 29 H 1.08998 * 109.46737 * 299.99387 * 1 2 3 30 30 H 1.09000 * 109.46773 * 59.99775 * 1 2 3 31 31 H 1.09003 * 109.46590 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46772 * 240.00336 * 2 1 3 33 33 H 1.09002 * 109.46941 * 120.00747 * 2 1 3 34 34 H 1.08003 * 120.15518 * 359.97438 * 7 6 4 35 35 H 1.08992 * 109.47218 * 295.03411 * 14 12 11 36 36 H 1.09005 * 109.46733 * 175.03555 * 14 12 11 37 37 H 1.09000 * 109.47120 * 55.03506 * 14 12 11 38 38 H 0.96997 * 119.99915 * 179.97438 * 18 17 15 39 39 H 1.07999 * 119.92589 * 179.70761 * 23 8 7 40 40 H 1.08007 * 119.92154 * 179.74536 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3496 1.5454 0.0005 5 8 4.0895 0.5821 0.0005 6 6 3.9143 2.9107 0.0011 7 6 5.2957 3.0951 0.0012 8 6 5.8198 4.3861 0.0023 9 6 7.2829 4.5913 0.0017 10 8 8.0305 3.6339 0.0008 11 8 7.7879 5.8402 0.0023 12 6 9.2344 5.9663 0.0023 13 1 9.6736 5.1115 -0.5120 14 6 9.7425 6.0099 1.4447 15 6 9.6278 7.2361 -0.7076 16 1 9.0067 8.1158 -0.6248 17 6 10.7808 7.2749 -1.4628 18 7 11.1755 8.4073 -2.0026 19 14 11.7823 5.7190 -1.7189 20 1 11.2243 4.9538 -2.8626 21 1 13.1935 6.0805 -2.0065 22 1 11.7252 4.8858 -0.4909 23 6 4.9582 5.4866 0.0090 24 6 3.5908 5.2966 0.0031 25 7 2.6845 6.4669 0.0040 26 8 1.4777 6.3025 0.0039 27 8 3.1455 7.5942 0.0049 28 6 3.0646 4.0198 0.0020 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5140 0.8899 34 1 5.9570 2.2412 0.0011 35 1 9.3739 6.9121 1.9327 36 1 10.8326 6.0157 1.4459 37 1 9.3832 5.1330 1.9832 38 1 11.9868 8.4346 -2.5336 39 1 5.3630 6.4878 0.0147 40 1 1.9939 3.8784 0.0015 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346026239.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:06 Heat of formation + Delta-G solvation = -164.063172 kcal Electronic energy + Delta-G solvation = -28364.217672 eV Core-core repulsion = 23919.379206 eV Total energy + Delta-G solvation = -4444.838466 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.45898 -42.14254 -41.53698 -40.09738 -37.88136 -37.80002 -37.79822 -35.26415 -33.86940 -33.61433 -32.62367 -32.20902 -27.92150 -27.50503 -26.46379 -26.22684 -23.88004 -23.18474 -22.66157 -21.66169 -20.49460 -19.98335 -19.37396 -18.86554 -18.76368 -18.60282 -18.10661 -17.77973 -17.55766 -17.37088 -17.09640 -16.51981 -16.22887 -15.38238 -14.97674 -14.79376 -14.68666 -14.44059 -14.32622 -13.84068 -13.76331 -13.65532 -13.61592 -13.08471 -13.00702 -12.95428 -12.80351 -12.63558 -12.60439 -12.49798 -12.36071 -12.07870 -11.99500 -11.78259 -11.59381 -11.52648 -11.25961 -11.19910 -10.97568 -10.89642 -8.48858 -6.59651 -1.54812 -1.21733 -0.27545 0.03190 0.74885 1.12707 1.25084 1.29152 1.35547 1.38200 1.59363 2.02554 2.17724 2.77410 2.87722 2.97347 3.20473 3.25842 3.43844 3.56629 3.80974 4.02882 4.04784 4.10239 4.17061 4.35457 4.37611 4.44929 4.54343 4.56559 4.59937 4.79320 4.83934 4.96077 5.06665 5.07457 5.28282 5.32644 5.34954 5.45312 6.05622 6.34206 6.36437 6.49883 6.62371 7.07306 8.66052 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.013323 B = 0.003013 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.163763 B = 9291.479942 C =10910.922239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.346 6.346 4 C 0.526 3.474 5 O -0.515 6.515 6 C -0.125 4.125 7 C 0.060 3.940 8 C -0.124 4.124 9 C 0.499 3.501 10 O -0.527 6.527 11 O -0.348 6.348 12 C 0.184 3.816 13 H 0.043 0.957 14 C -0.149 4.149 15 C -0.532 4.532 16 H 0.051 0.949 17 C 0.036 3.964 18 N -0.920 5.920 19 Si 0.926 3.074 20 H -0.268 1.268 21 H -0.268 1.268 22 H -0.246 1.246 23 C 0.039 3.961 24 C -0.066 4.066 25 N 0.031 4.969 26 O -0.123 6.123 27 O -0.190 6.190 28 C 0.054 3.946 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.171 0.829 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.277 0.723 39 H 0.172 0.828 40 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.006 -16.705 5.253 28.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.018 4.018 3 O -0.263 6.263 4 C 0.370 3.630 5 O -0.405 6.405 6 C -0.127 4.127 7 C 0.042 3.958 8 C -0.126 4.126 9 C 0.344 3.656 10 O -0.419 6.419 11 O -0.264 6.264 12 C 0.131 3.869 13 H 0.061 0.939 14 C -0.207 4.207 15 C -0.569 4.569 16 H 0.069 0.931 17 C -0.166 4.166 18 N -0.557 5.557 19 Si 0.748 3.252 20 H -0.194 1.194 21 H -0.193 1.193 22 H -0.170 1.170 23 C 0.020 3.980 24 C -0.149 4.149 25 N 0.551 4.449 26 O -0.350 6.350 27 O -0.397 6.397 28 C 0.035 3.965 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.188 0.812 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.189 0.811 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -20.908 -17.661 5.148 27.849 hybrid contribution 0.878 0.085 -0.410 0.973 sum -20.030 -17.577 4.738 27.066 Atomic orbital electron populations 1.21863 0.90141 1.04559 1.04038 1.23466 0.97127 0.77923 1.03332 1.86521 1.21471 1.34893 1.83367 1.20410 0.81695 0.88118 0.72729 1.90913 1.61094 1.42330 1.46139 1.18687 0.92071 0.90965 1.10971 1.21798 0.94563 0.96901 0.82573 1.18793 0.89792 0.93427 1.10568 1.21123 0.89152 0.82488 0.72830 1.90805 1.61114 1.42738 1.47233 1.86685 1.29579 1.28372 1.81780 1.20955 0.73123 0.96663 0.96152 0.93931 1.22170 1.01581 1.01253 0.95690 1.20895 1.08610 0.95912 1.31460 0.93063 1.25668 0.98104 0.99301 0.93505 1.69954 1.24740 1.27506 1.33535 0.86058 0.78787 0.79960 0.80346 1.19362 1.19329 1.16996 1.21615 0.90285 1.02177 0.83924 1.20761 0.89703 0.86530 1.17891 1.43526 1.01532 1.02322 0.97511 1.94513 0.96883 1.92400 1.51176 1.94667 1.80595 1.08995 1.55447 1.21701 1.04141 0.87175 0.83508 0.90968 0.91059 0.88129 0.90661 0.90545 0.81186 0.91767 0.91411 0.93059 0.91385 0.81061 0.78040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.29 71.98 0.74 -0.02 16 2 C 0.05 0.55 6.19 71.98 0.45 1.00 16 3 O -0.35 -4.79 9.46 -56.21 -0.53 -5.32 16 4 C 0.53 9.47 7.90 70.34 0.56 10.03 16 5 O -0.52 -12.14 16.13 19.94 0.32 -11.81 16 6 C -0.12 -2.19 5.87 -20.13 -0.12 -2.31 16 7 C 0.06 1.32 9.14 22.81 0.21 1.53 16 8 C -0.12 -3.29 5.87 -20.13 -0.12 -3.41 16 9 C 0.50 18.14 7.87 70.33 0.55 18.70 16 10 O -0.53 -21.22 15.60 19.92 0.31 -20.91 16 11 O -0.35 -14.78 9.11 -56.23 -0.51 -15.29 16 12 C 0.18 8.71 2.22 29.85 0.07 8.77 16 13 H 0.04 2.08 4.31 -2.39 -0.01 2.07 16 14 C -0.15 -6.11 9.53 71.98 0.69 -5.43 16 15 C -0.53 -29.59 9.25 25.60 0.24 -29.35 16 16 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 17 C 0.04 2.00 5.47 84.66 0.46 2.46 16 18 N -0.92 -54.44 13.96 21.45 0.30 -54.14 16 19 Si 0.93 42.40 26.99 68.60 1.85 44.25 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 22 H -0.25 -10.66 6.82 99.48 0.68 -9.98 16 23 C 0.04 0.96 9.12 22.60 0.21 1.16 16 24 C -0.07 -1.37 6.84 36.30 0.25 -1.12 16 25 N 0.03 0.75 4.45 -46.65 -0.21 0.54 16 26 O -0.12 -2.81 18.43 18.89 0.35 -2.46 16 27 O -0.19 -5.55 18.43 18.89 0.35 -5.21 16 28 C 0.05 0.83 9.12 22.59 0.21 1.03 16 29 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.17 3.89 7.23 -2.91 -0.02 3.87 16 35 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 37 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 39 H 0.17 4.59 7.13 -2.91 -0.02 4.57 16 40 H 0.20 2.04 7.13 -2.91 -0.02 2.02 16 Total: -1.00 -68.00 365.56 7.68 -60.32 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 1.07 Total: 6.99 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 4.38 Total: 3.04 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.09 Total: -53.60 kcal Atomic # 8 Polarization: -61.28 SS G_CDS: 0.28 Total: -61.00 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.85 Total: 44.25 kcal Total: -68.00 7.68 -60.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346026239.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.746 kcal (2) G-P(sol) polarization free energy of solvation -67.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds