Wall clock time and date at job start Tue Mar 31 2020 20:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45205 * 109.47171 * 2 1 4 4 C 1.34707 * 116.99879 * 180.02562 * 3 2 1 5 5 O 1.21466 * 120.00171 * 0.02562 * 4 3 2 6 6 C 1.47744 * 119.99568 * 180.02562 * 4 3 2 7 7 C 1.39370 * 120.07436 * 180.02562 * 6 4 3 8 8 C 1.39342 * 119.69783 * 180.02562 * 7 6 4 9 9 C 1.47742 * 120.07475 * 180.02562 * 8 7 6 10 10 O 1.21463 * 120.00094 * 0.02562 * 9 8 7 11 11 O 1.34711 * 119.99640 * 180.02562 * 9 8 7 12 12 C 1.45198 * 116.99905 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.46912 * 330.00621 * 12 11 9 14 14 C 1.53000 * 109.46967 * 90.00185 * 12 11 9 15 15 C 1.50694 * 109.47115 * 210.00150 * 12 11 9 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 12 11 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.39760 * 119.84662 * 0.28002 * 8 7 6 24 24 C 1.38058 * 120.14858 * 359.44189 * 23 8 7 25 25 N 1.48019 * 119.84452 * 180.25806 * 24 23 8 26 26 O 1.21806 * 119.99541 * 180.29932 * 25 24 23 27 27 O 1.21799 * 120.00296 * 0.29638 * 25 24 23 28 28 C 1.38096 * 120.30847 * 0.55836 * 24 23 8 29 29 H 1.09010 * 109.47204 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47389 * 299.99244 * 1 2 3 31 31 H 1.08999 * 109.47702 * 60.00289 * 1 2 3 32 32 H 1.09001 * 109.46953 * 239.99924 * 2 1 3 33 33 H 1.08997 * 109.47339 * 120.00387 * 2 1 3 34 34 H 1.08007 * 120.15243 * 0.02562 * 7 6 4 35 35 H 1.09007 * 109.47356 * 299.99990 * 14 12 11 36 36 H 1.09000 * 109.47156 * 59.99715 * 14 12 11 37 37 H 1.08997 * 109.47359 * 180.02562 * 14 12 11 38 38 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 39 39 H 1.07996 * 119.92641 * 179.71897 * 23 8 7 40 40 H 1.07992 * 119.92899 * 179.74605 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3494 1.5455 -0.0005 5 8 4.0894 0.5822 -0.0015 6 6 3.9141 2.9107 0.0000 7 6 5.2955 3.0952 -0.0011 8 6 5.8196 4.3863 0.0000 9 6 7.2827 4.5915 -0.0018 10 8 8.0302 3.6341 -0.0046 11 8 7.7876 5.8404 -0.0002 12 6 9.2341 5.9666 -0.0026 13 1 9.6743 5.1104 0.5086 14 6 9.7395 6.0138 -1.4460 15 6 9.6289 7.2346 0.7096 16 1 8.8688 7.8808 1.1231 17 6 10.9607 7.5697 0.8333 18 7 11.8863 6.7826 0.3302 19 14 11.4500 9.1419 1.7155 20 1 12.9294 9.2709 1.7132 21 1 10.8499 10.3078 1.0188 22 1 10.9598 9.0964 3.1165 23 6 4.9580 5.4867 0.0080 24 6 3.5905 5.2967 0.0033 25 7 2.6842 6.4670 0.0062 26 8 1.4773 6.3025 0.0075 27 8 3.1453 7.5944 0.0072 28 6 3.0643 4.0199 0.0022 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 5.9569 2.2413 -0.0028 35 1 9.4539 5.0966 -1.9612 36 1 9.2992 6.8698 -1.9573 37 1 10.8254 6.1081 -1.4479 38 1 12.8232 7.0186 0.4169 39 1 5.3628 6.4879 0.0135 40 1 1.9937 3.8784 0.0027 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346026240.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:10 Heat of formation + Delta-G solvation = -149.477289 kcal Electronic energy + Delta-G solvation = -28260.499177 eV Core-core repulsion = 23816.293202 eV Total energy + Delta-G solvation = -4444.205974 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.43179 -41.17215 -40.18939 -38.88009 -37.08624 -36.75910 -36.03910 -33.49152 -32.86473 -32.51949 -31.79477 -29.67810 -26.88637 -25.57617 -25.47157 -24.93346 -23.21909 -21.95088 -21.58263 -20.29356 -19.17103 -18.94969 -18.05654 -17.74884 -17.39385 -17.06716 -16.96559 -16.85671 -16.52103 -15.62675 -15.52363 -15.33403 -14.69786 -14.59612 -14.08433 -13.47672 -13.26756 -13.25270 -12.81015 -12.77902 -12.46304 -12.36989 -12.10371 -12.09221 -11.74477 -11.50666 -11.37816 -11.29877 -11.17545 -11.11375 -11.03093 -10.95861 -10.52798 -10.39917 -10.19927 -10.15627 -9.94776 -9.75205 -9.07563 -8.59404 -6.28248 -4.36231 -0.53045 -0.22831 0.79680 1.03854 1.76428 1.95250 2.52425 3.01792 3.22110 3.23425 3.26275 3.30651 3.73633 3.97483 4.14662 4.23735 4.29993 4.44117 4.46416 4.47038 4.53802 4.79879 5.04266 5.05551 5.12679 5.19703 5.30781 5.38395 5.48789 5.58307 5.65075 5.87744 6.10604 6.44644 6.72585 6.74652 6.90200 7.15882 7.41795 7.41873 7.57342 7.73598 7.98182 8.29051 8.71355 9.29657 10.79032 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.014672 B = 0.002760 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.907296 B =10142.340899 C =11686.386230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 O -0.352 6.352 4 C 0.518 3.482 5 O -0.488 6.488 6 C -0.134 4.134 7 C 0.047 3.953 8 C -0.112 4.112 9 C 0.499 3.501 10 O -0.499 6.499 11 O -0.346 6.346 12 C 0.218 3.782 13 H 0.050 0.950 14 C -0.157 4.157 15 C -0.525 4.525 16 H 0.071 0.929 17 C 0.064 3.936 18 N -0.888 5.888 19 Si 0.914 3.086 20 H -0.284 1.284 21 H -0.272 1.272 22 H -0.274 1.274 23 C 0.032 3.968 24 C -0.067 4.067 25 N 0.029 4.971 26 O -0.156 6.156 27 O -0.141 6.141 28 C 0.021 3.979 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.173 0.827 35 H 0.017 0.983 36 H 0.039 0.961 37 H 0.102 0.898 38 H 0.268 0.732 39 H 0.181 0.819 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.098 -10.188 -1.474 23.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 O -0.269 6.269 4 C 0.362 3.638 5 O -0.376 6.376 6 C -0.136 4.136 7 C 0.029 3.971 8 C -0.114 4.114 9 C 0.341 3.659 10 O -0.389 6.389 11 O -0.261 6.261 12 C 0.166 3.834 13 H 0.068 0.932 14 C -0.215 4.215 15 C -0.563 4.563 16 H 0.089 0.911 17 C -0.139 4.139 18 N -0.525 5.525 19 Si 0.741 3.259 20 H -0.210 1.210 21 H -0.198 1.198 22 H -0.199 1.199 23 C 0.013 3.987 24 C -0.150 4.150 25 N 0.551 4.449 26 O -0.372 6.372 27 O -0.360 6.360 28 C 0.002 3.998 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.190 0.810 35 H 0.036 0.964 36 H 0.059 0.941 37 H 0.121 0.879 38 H 0.078 0.922 39 H 0.199 0.801 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -19.990 -11.352 -1.499 23.037 hybrid contribution 0.250 0.853 0.386 0.969 sum -19.739 -10.499 -1.113 22.385 Atomic orbital electron populations 1.21834 0.92124 1.03292 1.03860 1.23156 0.95630 0.79080 1.03141 1.86521 1.22914 1.33400 1.84055 1.20537 0.81161 0.88750 0.73399 1.90913 1.60326 1.41621 1.44751 1.18796 0.92922 0.90492 1.11403 1.21864 0.93636 0.98051 0.83560 1.19319 0.92697 0.92273 1.07089 1.20428 0.87245 0.83831 0.74368 1.90839 1.59955 1.42508 1.45571 1.86549 1.31971 1.26445 1.81182 1.20812 0.68436 0.99047 0.95113 0.93175 1.22199 1.05316 0.97694 0.96255 1.20952 0.92497 1.06041 1.36836 0.91102 1.24889 0.95761 0.97752 0.95464 1.69878 1.01023 1.37239 1.44390 0.86287 0.77335 0.82281 0.80007 1.20993 1.19772 1.19917 1.21772 0.89597 1.02891 0.84464 1.20879 0.90474 0.86402 1.17200 1.43412 1.01438 1.02189 0.97819 1.94545 0.96738 1.92463 1.53426 1.94623 1.80439 1.08325 1.52604 1.21452 1.02886 0.88680 0.86829 0.89911 0.91214 0.91215 0.90733 0.90726 0.80975 0.96410 0.94143 0.87928 0.92174 0.80132 0.80970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 10.29 37.15 0.38 -0.27 16 2 C 0.06 0.41 6.19 37.15 0.23 0.64 16 3 O -0.35 -3.05 9.46 -40.51 -0.38 -3.44 16 4 C 0.52 5.47 7.90 34.62 0.27 5.74 16 5 O -0.49 -6.35 16.13 -19.24 -0.31 -6.66 16 6 C -0.13 -1.39 5.87 -105.03 -0.62 -2.01 16 7 C 0.05 0.57 9.14 -38.75 -0.35 0.22 16 8 C -0.11 -1.57 5.87 -105.03 -0.62 -2.18 16 9 C 0.50 9.46 7.87 34.61 0.27 9.73 16 10 O -0.50 -10.71 15.60 -19.24 -0.30 -11.01 16 11 O -0.35 -7.48 9.11 -40.52 -0.37 -7.85 16 12 C 0.22 5.50 2.56 -27.89 -0.07 5.43 16 13 H 0.05 1.40 7.16 -51.93 -0.37 1.02 16 14 C -0.16 -3.77 9.33 37.16 0.35 -3.42 16 15 C -0.53 -14.05 8.90 -34.44 -0.31 -14.36 16 16 H 0.07 1.86 7.81 -52.49 -0.41 1.44 16 17 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -24.36 11.32 55.43 0.63 -23.73 16 19 Si 0.91 20.49 29.54 -169.99 -5.02 15.47 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 C 0.03 0.40 9.12 -39.08 -0.36 0.05 16 24 C -0.07 -0.77 6.84 -80.06 -0.55 -1.31 16 25 N 0.03 0.38 4.45 33.91 0.15 0.53 16 26 O -0.16 -2.00 18.43 -29.46 -0.54 -2.54 16 27 O -0.14 -2.02 18.43 -29.46 -0.54 -2.57 16 28 C 0.02 0.20 9.12 -39.08 -0.36 -0.16 16 29 H 0.08 0.22 8.14 -51.92 -0.42 -0.20 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.17 2.16 7.23 -52.48 -0.38 1.78 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.10 2.65 6.07 -51.93 -0.32 2.34 16 38 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.18 2.34 7.13 -52.49 -0.37 1.97 16 40 H 0.17 1.32 7.13 -52.49 -0.37 0.94 16 LS Contribution 365.91 15.07 5.51 5.51 Total: -1.00 -30.21 365.91 -7.31 -37.52 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -4.32 Total: -0.96 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -1.81 Total: -0.29 kcal Atomic # 7 Polarization: -23.97 SS G_CDS: 0.78 Total: -23.20 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -2.45 Total: -34.06 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.21 -7.31 -37.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346026240.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.958 kcal (2) G-P(sol) polarization free energy of solvation -30.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds