Wall clock time and date at job start Tue Mar 31 2020 20:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45205 * 109.47171 * 2 1 4 4 C 1.34707 * 116.99879 * 180.02562 * 3 2 1 5 5 O 1.21466 * 120.00171 * 0.02562 * 4 3 2 6 6 C 1.47744 * 119.99568 * 180.02562 * 4 3 2 7 7 C 1.39370 * 120.07436 * 180.02562 * 6 4 3 8 8 C 1.39342 * 119.69783 * 180.02562 * 7 6 4 9 9 C 1.47742 * 120.07475 * 180.02562 * 8 7 6 10 10 O 1.21463 * 120.00094 * 0.02562 * 9 8 7 11 11 O 1.34711 * 119.99640 * 180.02562 * 9 8 7 12 12 C 1.45198 * 116.99905 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.46912 * 330.00621 * 12 11 9 14 14 C 1.53000 * 109.46967 * 90.00185 * 12 11 9 15 15 C 1.50694 * 109.47115 * 210.00150 * 12 11 9 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 12 11 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.39760 * 119.84662 * 0.28002 * 8 7 6 24 24 C 1.38058 * 120.14858 * 359.44189 * 23 8 7 25 25 N 1.48019 * 119.84452 * 180.25806 * 24 23 8 26 26 O 1.21806 * 119.99541 * 180.29932 * 25 24 23 27 27 O 1.21799 * 120.00296 * 0.29638 * 25 24 23 28 28 C 1.38096 * 120.30847 * 0.55836 * 24 23 8 29 29 H 1.09010 * 109.47204 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47389 * 299.99244 * 1 2 3 31 31 H 1.08999 * 109.47702 * 60.00289 * 1 2 3 32 32 H 1.09001 * 109.46953 * 239.99924 * 2 1 3 33 33 H 1.08997 * 109.47339 * 120.00387 * 2 1 3 34 34 H 1.08007 * 120.15243 * 0.02562 * 7 6 4 35 35 H 1.09007 * 109.47356 * 299.99990 * 14 12 11 36 36 H 1.09000 * 109.47156 * 59.99715 * 14 12 11 37 37 H 1.08997 * 109.47359 * 180.02562 * 14 12 11 38 38 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 39 39 H 1.07996 * 119.92641 * 179.71897 * 23 8 7 40 40 H 1.07992 * 119.92899 * 179.74605 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3494 1.5455 -0.0005 5 8 4.0894 0.5822 -0.0015 6 6 3.9141 2.9107 0.0000 7 6 5.2955 3.0952 -0.0011 8 6 5.8196 4.3863 0.0000 9 6 7.2827 4.5915 -0.0018 10 8 8.0302 3.6341 -0.0046 11 8 7.7876 5.8404 -0.0002 12 6 9.2341 5.9666 -0.0026 13 1 9.6743 5.1104 0.5086 14 6 9.7395 6.0138 -1.4460 15 6 9.6289 7.2346 0.7096 16 1 8.8688 7.8808 1.1231 17 6 10.9607 7.5697 0.8333 18 7 11.8863 6.7826 0.3302 19 14 11.4500 9.1419 1.7155 20 1 12.9294 9.2709 1.7132 21 1 10.8499 10.3078 1.0188 22 1 10.9598 9.0964 3.1165 23 6 4.9580 5.4867 0.0080 24 6 3.5905 5.2967 0.0033 25 7 2.6842 6.4670 0.0062 26 8 1.4773 6.3025 0.0075 27 8 3.1453 7.5944 0.0072 28 6 3.0643 4.0199 0.0022 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 5.9569 2.2413 -0.0028 35 1 9.4539 5.0966 -1.9612 36 1 9.2992 6.8698 -1.9573 37 1 10.8254 6.1081 -1.4479 38 1 12.8232 7.0186 0.4169 39 1 5.3628 6.4879 0.0135 40 1 1.9937 3.8784 0.0027 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346026240.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:09 Heat of formation + Delta-G solvation = -163.863569 kcal Electronic energy + Delta-G solvation = -28261.123013 eV Core-core repulsion = 23816.293202 eV Total energy + Delta-G solvation = -4444.829810 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.45260 -42.13239 -41.50838 -40.07594 -37.88064 -37.79288 -37.76858 -35.41687 -33.82395 -33.59614 -32.40993 -31.59394 -27.91195 -27.48756 -26.45861 -26.21331 -23.90395 -23.28378 -22.70997 -21.69507 -20.39404 -19.97631 -19.07825 -18.76045 -18.70109 -18.60354 -18.04572 -17.77898 -17.48272 -17.26152 -17.05693 -16.58503 -16.30782 -15.37927 -15.03754 -14.77091 -14.56725 -14.23360 -13.97890 -13.83084 -13.72383 -13.61379 -13.26358 -13.05993 -13.00415 -12.83352 -12.79482 -12.59911 -12.49374 -12.42195 -12.35166 -12.20388 -12.02125 -11.79509 -11.67803 -11.59257 -11.19694 -11.06726 -10.96295 -10.61772 -8.30941 -6.47621 -1.54168 -1.21071 -0.26672 0.03123 0.76027 1.14152 1.36938 1.42519 1.45914 1.52751 1.65839 2.03344 2.36834 2.83580 2.94889 3.00614 3.20822 3.25832 3.44216 3.58571 3.83341 4.03037 4.05159 4.11556 4.35653 4.37078 4.46043 4.49184 4.58239 4.74674 4.77874 4.80586 4.96428 5.05082 5.07033 5.08108 5.35177 5.43910 5.56973 5.80747 5.97546 6.35500 6.36701 6.50135 6.72115 7.23174 8.76350 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.014672 B = 0.002760 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.907296 B =10142.340899 C =11686.386230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.345 6.345 4 C 0.526 3.474 5 O -0.516 6.516 6 C -0.124 4.124 7 C 0.058 3.942 8 C -0.122 4.122 9 C 0.498 3.502 10 O -0.530 6.530 11 O -0.350 6.350 12 C 0.220 3.780 13 H 0.015 0.985 14 C -0.145 4.145 15 C -0.549 4.549 16 H 0.071 0.929 17 C 0.018 3.982 18 N -0.915 5.915 19 Si 0.981 3.019 20 H -0.279 1.279 21 H -0.264 1.264 22 H -0.269 1.269 23 C 0.040 3.960 24 C -0.065 4.065 25 N 0.031 4.969 26 O -0.126 6.126 27 O -0.186 6.186 28 C 0.054 3.946 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.167 0.833 35 H 0.026 0.974 36 H 0.048 0.952 37 H 0.083 0.917 38 H 0.272 0.728 39 H 0.174 0.826 40 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.834 -10.268 -1.263 25.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.019 4.019 3 O -0.262 6.262 4 C 0.370 3.630 5 O -0.406 6.406 6 C -0.126 4.126 7 C 0.040 3.960 8 C -0.124 4.124 9 C 0.343 3.657 10 O -0.421 6.421 11 O -0.266 6.266 12 C 0.167 3.833 13 H 0.033 0.967 14 C -0.203 4.203 15 C -0.586 4.586 16 H 0.089 0.911 17 C -0.182 4.182 18 N -0.553 5.553 19 Si 0.804 3.196 20 H -0.204 1.204 21 H -0.188 1.188 22 H -0.194 1.194 23 C 0.021 3.979 24 C -0.148 4.148 25 N 0.552 4.448 26 O -0.351 6.351 27 O -0.394 6.394 28 C 0.035 3.965 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.185 0.815 35 H 0.045 0.955 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.192 0.808 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -22.686 -11.365 -1.293 25.406 hybrid contribution 0.891 0.688 0.313 1.168 sum -21.796 -10.677 -0.981 24.290 Atomic orbital electron populations 1.21860 0.90068 1.04575 1.04060 1.23466 0.97169 0.77927 1.03310 1.86520 1.21400 1.34886 1.83374 1.20416 0.81711 0.88122 0.72729 1.90916 1.61126 1.42373 1.46135 1.18674 0.91951 0.91037 1.10969 1.21781 0.94630 0.96897 0.82728 1.18759 0.89552 0.93534 1.10538 1.21123 0.89210 0.82432 0.72926 1.90818 1.61335 1.42941 1.47047 1.86520 1.29926 1.28254 1.81877 1.20488 0.70294 0.97284 0.95230 0.96712 1.22025 1.03974 0.98477 0.95830 1.21246 0.93089 1.06649 1.37659 0.91111 1.25788 0.95546 1.00925 0.95919 1.69997 1.01372 1.38821 1.45068 0.85258 0.77150 0.78323 0.78875 1.20358 1.18836 1.19379 1.21598 0.90223 1.02112 0.83939 1.20750 0.89667 0.86566 1.17823 1.43500 1.01514 1.02271 0.97529 1.94520 0.96822 1.92400 1.51366 1.94656 1.80590 1.08928 1.55206 1.21699 1.04112 0.87167 0.83510 0.88121 0.91000 0.90964 0.90623 0.90661 0.81547 0.95455 0.93318 0.89857 0.91922 0.80823 0.77955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.29 71.98 0.74 -0.07 16 2 C 0.05 0.58 6.19 71.98 0.45 1.02 16 3 O -0.35 -4.96 9.46 -56.17 -0.53 -5.49 16 4 C 0.53 9.92 7.90 70.34 0.56 10.48 16 5 O -0.52 -12.75 16.13 19.95 0.32 -12.43 16 6 C -0.12 -2.29 5.87 -20.13 -0.12 -2.40 16 7 C 0.06 1.36 9.14 22.81 0.21 1.57 16 8 C -0.12 -3.41 5.87 -20.13 -0.12 -3.53 16 9 C 0.50 19.54 7.87 70.33 0.55 20.09 16 10 O -0.53 -23.75 15.60 19.95 0.31 -23.44 16 11 O -0.35 -15.68 9.11 -56.21 -0.51 -16.19 16 12 C 0.22 11.54 2.56 29.85 0.08 11.61 16 13 H 0.02 0.88 7.16 -2.39 -0.02 0.87 16 14 C -0.15 -7.18 9.33 71.98 0.67 -6.51 16 15 C -0.55 -30.02 8.90 25.60 0.23 -29.80 16 16 H 0.07 3.77 7.81 -2.91 -0.02 3.74 16 17 C 0.02 0.98 5.30 84.66 0.45 1.43 16 18 N -0.91 -51.20 11.32 21.45 0.24 -50.96 16 19 Si 0.98 41.98 29.54 68.60 2.03 44.01 16 20 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 21 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 23 C 0.04 1.00 9.12 22.60 0.21 1.20 16 24 C -0.07 -1.35 6.84 36.30 0.25 -1.10 16 25 N 0.03 0.74 4.45 -46.64 -0.21 0.54 16 26 O -0.13 -2.80 18.43 18.88 0.35 -2.45 16 27 O -0.19 -5.23 18.43 18.89 0.35 -4.88 16 28 C 0.05 0.85 9.12 22.60 0.21 1.05 16 29 H 0.10 0.22 8.14 -2.38 -0.02 0.20 16 30 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.17 4.19 7.23 -2.91 -0.02 4.17 16 35 H 0.03 1.23 8.14 -2.38 -0.02 1.22 16 36 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.08 4.45 6.07 -2.39 -0.01 4.43 16 38 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 39 H 0.17 4.57 7.13 -2.91 -0.02 4.55 16 40 H 0.20 2.07 7.13 -2.91 -0.02 2.05 16 Total: -1.00 -66.29 365.91 7.80 -58.49 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: 1.10 Total: 7.74 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 4.35 Total: 5.06 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: 0.04 Total: -50.42 kcal Atomic # 8 Polarization: -65.17 SS G_CDS: 0.29 Total: -64.88 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -66.29 7.80 -58.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346026240.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.371 kcal (2) G-P(sol) polarization free energy of solvation -66.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds