Wall clock time and date at job start Tue Mar 31 2020 19:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37933 * 119.57226 * 2 1 4 4 C 1.39454 * 119.09730 * 180.02562 * 3 2 1 5 5 N 1.39396 * 120.85524 * 179.97438 * 4 3 2 6 6 C 1.34778 * 120.00024 * 145.63825 * 5 4 3 7 7 O 1.21364 * 119.99884 * 4.79604 * 6 5 4 8 8 C 1.49372 * 120.00015 * 184.80012 * 6 5 4 9 9 O 1.21356 * 119.99907 * 5.10453 * 8 6 5 10 10 N 1.34772 * 119.99570 * 185.10706 * 8 6 5 11 11 C 1.46503 * 119.99685 * 184.99295 * 10 8 6 12 12 C 1.52999 * 109.47405 * 184.71210 * 11 10 8 13 13 C 1.50706 * 115.54984 * 304.42960 * 12 11 10 14 14 H 1.08001 * 119.99952 * 95.18490 * 13 12 11 15 15 C 1.37876 * 119.99605 * 274.91142 * 13 12 11 16 16 N 1.31505 * 120.00475 * 355.53072 * 15 13 12 17 17 Si 1.86807 * 119.99593 * 175.53386 * 15 13 12 18 18 H 1.48500 * 109.47055 * 60.00323 * 17 15 13 19 19 H 1.48494 * 109.46760 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47241 * 300.00264 * 17 15 13 21 21 C 1.53002 * 117.49897 * 90.09642 * 12 11 10 22 22 C 1.52998 * 117.50390 * 158.75547 * 12 11 10 23 23 C 1.39400 * 118.28895 * 0.24769 * 4 3 2 24 24 C 1.38092 * 119.05401 * 359.50623 * 23 4 3 25 25 Cl 1.73603 * 119.59535 * 180.24831 * 24 23 4 26 26 N 1.31974 * 119.57223 * 180.02562 * 2 1 3 27 27 H 1.09010 * 109.46735 * 89.99834 * 1 2 3 28 28 H 1.08994 * 109.47498 * 209.99621 * 1 2 3 29 29 H 1.08998 * 109.47305 * 330.00338 * 1 2 3 30 30 H 1.08002 * 120.45022 * 0.04605 * 3 2 1 31 31 H 0.97001 * 120.00017 * 325.64029 * 5 4 3 32 32 H 0.97000 * 120.00702 * 4.99646 * 10 8 6 33 33 H 1.09002 * 109.47355 * 64.71511 * 11 10 8 34 34 H 1.08993 * 109.47562 * 304.71539 * 11 10 8 35 35 H 0.96997 * 120.00261 * 185.00400 * 16 15 13 36 36 H 1.09004 * 117.49987 * 215.00987 * 21 12 11 37 37 H 1.09003 * 117.49754 * 0.02562 * 21 12 11 38 38 H 1.09010 * 117.49491 * 359.97438 * 22 12 11 39 39 H 1.08991 * 117.50575 * 144.97393 * 22 12 11 40 40 H 1.08000 * 120.47252 * 179.72761 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1877 1.1997 0.0000 4 6 3.5822 1.1881 -0.0005 5 7 4.3070 2.3788 -0.0011 6 6 5.4807 2.4536 0.6572 7 8 5.9492 1.4619 1.1769 8 6 6.2048 3.7569 0.7473 9 8 5.6936 4.7666 0.3090 10 7 7.4258 3.8115 1.3152 11 6 8.0893 5.1042 1.5027 12 6 9.4984 4.8790 2.0543 13 6 9.5773 4.0779 3.3284 14 1 9.7592 3.0141 3.2870 15 6 9.4230 4.7041 4.5470 16 7 9.2948 6.0117 4.6030 17 14 9.3960 3.6949 6.1188 18 1 10.6770 2.9562 6.2548 19 1 9.2201 4.5984 7.2841 20 1 8.2701 2.7280 6.0670 21 6 10.6346 4.7119 1.0433 22 6 10.5206 6.0009 1.8609 23 6 4.2327 -0.0448 -0.0064 24 6 3.4779 -1.2013 -0.0010 25 17 4.2735 -2.7443 -0.0016 26 7 2.1583 -1.1478 -0.0005 27 1 -0.3633 0.0000 -1.0278 28 1 -0.3634 -0.8899 0.5137 29 1 -0.3634 0.8900 0.5138 30 1 1.6481 2.1352 0.0007 31 1 3.9667 3.1536 -0.4753 32 1 7.8654 2.9951 1.5998 33 1 7.5160 5.7083 2.2060 34 1 8.1522 5.6225 0.5459 35 1 9.2591 6.4592 5.4628 36 1 11.4391 4.0225 1.2996 37 1 10.3781 4.7628 -0.0149 38 1 10.1892 6.8994 1.3401 39 1 11.2498 6.1600 2.6552 40 1 5.3115 -0.0949 -0.0114 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348378359.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:49 Heat of formation + Delta-G solvation = -15.247984 kcal Electronic energy + Delta-G solvation = -25735.594437 eV Core-core repulsion = 21770.210997 eV Total energy + Delta-G solvation = -3965.383439 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.37809 -40.09300 -38.50741 -36.92042 -36.84103 -35.82221 -33.55803 -32.89387 -32.05615 -31.33679 -28.06287 -27.33260 -25.63196 -24.56491 -23.58296 -21.95842 -21.20743 -20.27726 -19.71409 -18.57825 -17.79909 -16.89113 -16.55204 -16.18420 -16.15309 -15.74222 -15.17753 -15.11033 -14.84452 -14.65636 -14.10371 -13.99975 -13.71077 -13.31791 -13.22920 -12.82308 -12.67468 -12.55623 -12.07445 -11.91223 -11.72546 -11.58322 -11.49403 -11.08124 -11.06320 -11.00011 -10.59679 -10.31771 -10.11692 -9.71878 -9.44336 -9.16844 -9.14063 -9.10872 -8.67719 -8.51434 -8.23759 -6.16183 -4.26997 0.56060 0.68244 1.51317 1.56792 2.24268 3.18532 3.24326 3.29597 3.33057 3.36901 3.65394 4.00121 4.29768 4.49356 4.60464 4.64216 4.67371 5.01574 5.11374 5.17828 5.23310 5.24666 5.32539 5.54429 5.72140 5.81545 5.86296 6.17740 6.24941 6.31379 6.36349 6.55966 6.66409 6.69147 6.90168 7.00885 7.20677 7.39770 7.44678 7.49028 7.73508 7.88829 8.21625 8.31476 8.75543 9.41873 10.90614 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.013658 B = 0.002701 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.659807 B =10362.578396 C =10913.014563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.164 3.836 3 C -0.196 4.196 4 C 0.210 3.790 5 N -0.648 5.648 6 C 0.511 3.489 7 O -0.487 6.487 8 C 0.499 3.501 9 O -0.536 6.536 10 N -0.657 5.657 11 C 0.158 3.842 12 C 0.020 3.980 13 C -0.506 4.506 14 H 0.062 0.938 15 C 0.076 3.924 16 N -0.874 5.874 17 Si 0.890 3.110 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.210 4.210 22 C -0.139 4.139 23 C -0.167 4.167 24 C 0.199 3.801 25 Cl -0.025 7.025 26 N -0.492 5.492 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.148 0.852 31 H 0.429 0.571 32 H 0.417 0.583 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.263 0.737 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.085 -8.875 -10.901 19.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.026 3.974 3 C -0.218 4.218 4 C 0.106 3.894 5 N -0.296 5.296 6 C 0.293 3.707 7 O -0.358 6.358 8 C 0.277 3.723 9 O -0.415 6.415 10 N -0.306 5.306 11 C 0.036 3.964 12 C 0.019 3.981 13 C -0.543 4.543 14 H 0.080 0.920 15 C -0.129 4.129 16 N -0.510 5.510 17 Si 0.717 3.283 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.247 4.247 22 C -0.177 4.177 23 C -0.190 4.190 24 C 0.035 3.965 25 Cl 0.004 6.996 26 N -0.206 5.206 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.166 0.834 31 H 0.268 0.732 32 H 0.254 0.746 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -14.481 -9.533 -10.625 20.334 hybrid contribution 0.673 0.209 0.938 1.173 sum -13.808 -9.324 -9.687 19.272 Atomic orbital electron populations 1.20752 0.87673 1.04034 1.03543 1.20938 0.96961 0.86338 0.93172 1.21851 0.92345 1.00634 1.06995 1.17809 0.90622 0.85940 0.94981 1.43130 1.21447 1.13259 1.51780 1.20901 0.81165 0.90512 0.78097 1.90797 1.65046 1.36833 1.43102 1.19522 0.83558 0.87746 0.81446 1.90743 1.67157 1.35367 1.48243 1.45901 1.15425 1.13277 1.56023 1.21227 0.94721 0.81850 0.98609 1.19011 0.85236 0.99597 0.94214 1.20331 1.51202 0.94077 0.88692 0.91978 1.24977 0.93978 0.94903 0.98999 1.69963 1.47845 1.07621 1.25538 0.86690 0.78876 0.80141 0.82575 1.20121 1.21214 1.19962 1.23073 1.04151 1.02345 0.95146 1.22471 1.03909 0.90555 1.00789 1.21952 1.03217 0.89656 1.04207 1.21343 0.89391 0.87556 0.98225 1.98416 1.77114 1.27766 1.96341 1.66855 1.08231 1.30196 1.15345 0.89885 0.89996 0.90143 0.83382 0.73206 0.74601 0.90683 0.93134 0.92703 0.90187 0.91606 0.91694 0.89346 0.81971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.63 10.17 36.01 0.37 -0.27 16 2 C 0.16 1.60 6.78 -82.64 -0.56 1.04 16 3 C -0.20 -1.82 9.69 -39.24 -0.38 -2.20 16 4 C 0.21 2.43 6.34 -83.53 -0.53 1.90 16 5 N -0.65 -7.56 5.32 -10.13 -0.05 -7.61 16 6 C 0.51 7.62 7.74 -11.62 -0.09 7.53 16 7 O -0.49 -8.18 13.97 5.49 0.08 -8.10 16 8 C 0.50 8.54 7.88 -11.62 -0.09 8.44 16 9 O -0.54 -9.84 16.48 5.49 0.09 -9.75 16 10 N -0.66 -12.30 5.40 -60.76 -0.33 -12.63 16 11 C 0.16 3.30 5.58 -4.04 -0.02 3.28 16 12 C 0.02 0.45 1.61 -155.66 -0.25 0.20 16 13 C -0.51 -12.62 8.13 -34.44 -0.28 -12.90 16 14 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 15 C 0.08 1.96 5.43 -17.82 -0.10 1.86 16 16 N -0.87 -23.36 12.65 55.43 0.70 -22.66 16 17 Si 0.89 20.34 29.54 -169.99 -5.02 15.31 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 C -0.21 -4.19 9.93 -26.69 -0.27 -4.46 16 22 C -0.14 -3.03 9.17 -26.70 -0.24 -3.27 16 23 C -0.17 -2.14 8.54 -39.20 -0.33 -2.47 16 24 C 0.20 2.52 7.27 -17.50 -0.13 2.39 16 25 Cl -0.02 -0.29 29.10 -51.86 -1.51 -1.80 16 26 N -0.49 -5.98 10.25 -6.70 -0.07 -6.05 16 27 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.35 8.08 -51.93 -0.42 -0.07 16 30 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.43 4.06 8.32 -40.82 -0.34 3.72 16 32 H 0.42 7.81 7.49 -40.82 -0.31 7.51 16 33 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 34 H 0.05 1.00 8.06 -51.93 -0.42 0.58 16 35 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 36 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 39 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 40 H 0.16 2.20 6.29 -52.49 -0.33 1.87 16 LS Contribution 367.72 15.07 5.54 5.54 Total: -1.00 -28.73 367.72 -8.22 -36.95 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -4.74 Total: 9.71 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -2.91 Total: 1.09 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.25 Total: -48.96 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: 0.17 Total: -17.85 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.51 Total: -1.80 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.73 -8.22 -36.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348378359.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.703 kcal (2) G-P(sol) polarization free energy of solvation -28.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds