Wall clock time and date at job start Tue Mar 31 2020 19:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37933 * 119.57226 * 2 1 4 4 C 1.39454 * 119.09730 * 180.02562 * 3 2 1 5 5 N 1.39396 * 120.85524 * 179.97438 * 4 3 2 6 6 C 1.34778 * 120.00024 * 145.63825 * 5 4 3 7 7 O 1.21364 * 119.99884 * 4.79604 * 6 5 4 8 8 C 1.49372 * 120.00015 * 184.80012 * 6 5 4 9 9 O 1.21356 * 119.99907 * 5.10453 * 8 6 5 10 10 N 1.34772 * 119.99570 * 185.10706 * 8 6 5 11 11 C 1.46503 * 119.99685 * 184.99295 * 10 8 6 12 12 C 1.52999 * 109.47405 * 184.71210 * 11 10 8 13 13 C 1.50706 * 115.54984 * 304.42960 * 12 11 10 14 14 H 1.08001 * 119.99952 * 95.18490 * 13 12 11 15 15 C 1.37876 * 119.99605 * 274.91142 * 13 12 11 16 16 N 1.31505 * 120.00475 * 355.53072 * 15 13 12 17 17 Si 1.86807 * 119.99593 * 175.53386 * 15 13 12 18 18 H 1.48500 * 109.47055 * 60.00323 * 17 15 13 19 19 H 1.48494 * 109.46760 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47241 * 300.00264 * 17 15 13 21 21 C 1.53002 * 117.49897 * 90.09642 * 12 11 10 22 22 C 1.52998 * 117.50390 * 158.75547 * 12 11 10 23 23 C 1.39400 * 118.28895 * 0.24769 * 4 3 2 24 24 C 1.38092 * 119.05401 * 359.50623 * 23 4 3 25 25 Cl 1.73603 * 119.59535 * 180.24831 * 24 23 4 26 26 N 1.31974 * 119.57223 * 180.02562 * 2 1 3 27 27 H 1.09010 * 109.46735 * 89.99834 * 1 2 3 28 28 H 1.08994 * 109.47498 * 209.99621 * 1 2 3 29 29 H 1.08998 * 109.47305 * 330.00338 * 1 2 3 30 30 H 1.08002 * 120.45022 * 0.04605 * 3 2 1 31 31 H 0.97001 * 120.00017 * 325.64029 * 5 4 3 32 32 H 0.97000 * 120.00702 * 4.99646 * 10 8 6 33 33 H 1.09002 * 109.47355 * 64.71511 * 11 10 8 34 34 H 1.08993 * 109.47562 * 304.71539 * 11 10 8 35 35 H 0.96997 * 120.00261 * 185.00400 * 16 15 13 36 36 H 1.09004 * 117.49987 * 215.00987 * 21 12 11 37 37 H 1.09003 * 117.49754 * 0.02562 * 21 12 11 38 38 H 1.09010 * 117.49491 * 359.97438 * 22 12 11 39 39 H 1.08991 * 117.50575 * 144.97393 * 22 12 11 40 40 H 1.08000 * 120.47252 * 179.72761 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1877 1.1997 0.0000 4 6 3.5822 1.1881 -0.0005 5 7 4.3070 2.3788 -0.0011 6 6 5.4807 2.4536 0.6572 7 8 5.9492 1.4619 1.1769 8 6 6.2048 3.7569 0.7473 9 8 5.6936 4.7666 0.3090 10 7 7.4258 3.8115 1.3152 11 6 8.0893 5.1042 1.5027 12 6 9.4984 4.8790 2.0543 13 6 9.5773 4.0779 3.3284 14 1 9.7592 3.0141 3.2870 15 6 9.4230 4.7041 4.5470 16 7 9.2948 6.0117 4.6030 17 14 9.3960 3.6949 6.1188 18 1 10.6770 2.9562 6.2548 19 1 9.2201 4.5984 7.2841 20 1 8.2701 2.7280 6.0670 21 6 10.6346 4.7119 1.0433 22 6 10.5206 6.0009 1.8609 23 6 4.2327 -0.0448 -0.0064 24 6 3.4779 -1.2013 -0.0010 25 17 4.2735 -2.7443 -0.0016 26 7 2.1583 -1.1478 -0.0005 27 1 -0.3633 0.0000 -1.0278 28 1 -0.3634 -0.8899 0.5137 29 1 -0.3634 0.8900 0.5138 30 1 1.6481 2.1352 0.0007 31 1 3.9667 3.1536 -0.4753 32 1 7.8654 2.9951 1.5998 33 1 7.5160 5.7083 2.2060 34 1 8.1522 5.6225 0.5459 35 1 9.2591 6.4592 5.4628 36 1 11.4391 4.0225 1.2996 37 1 10.3781 4.7628 -0.0149 38 1 10.1892 6.8994 1.3401 39 1 11.2498 6.1600 2.6552 40 1 5.3115 -0.0949 -0.0114 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348378359.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:48 Heat of formation + Delta-G solvation = -33.738251 kcal Electronic energy + Delta-G solvation = -25736.396235 eV Core-core repulsion = 21770.210997 eV Total energy + Delta-G solvation = -3966.185237 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.43739 -41.18751 -39.82832 -38.50114 -37.82472 -36.89100 -35.05964 -33.98723 -33.64774 -32.28258 -28.87963 -28.71580 -27.48136 -25.84100 -24.46583 -23.07916 -22.78810 -21.53141 -21.32541 -19.92930 -18.84070 -18.15789 -17.79343 -17.60754 -17.17524 -16.87815 -16.67993 -16.41460 -16.12602 -15.83533 -15.54769 -15.35290 -14.83779 -14.52963 -14.44421 -13.86652 -13.74664 -13.53851 -13.42242 -13.14202 -12.99609 -12.93499 -12.84007 -12.68488 -12.40620 -12.38405 -12.00781 -11.98746 -11.44789 -11.14132 -10.97686 -10.68116 -10.47087 -10.20925 -10.07384 -9.96627 -9.92538 -8.12254 -6.25988 -0.38106 -0.19882 0.36258 0.64788 1.07903 1.41139 1.44130 1.49167 1.96307 2.39063 2.44104 2.47370 3.14312 3.20620 3.31766 3.54977 3.70049 3.75374 3.91434 4.17456 4.19358 4.41145 4.50383 4.63879 4.67433 4.70611 4.76644 4.83552 4.91294 4.96746 5.03292 5.16386 5.26943 5.29448 5.46292 5.50311 5.67285 5.74024 5.76128 6.28588 6.34714 6.52790 6.61982 6.81128 6.86370 7.44379 8.93883 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.013658 B = 0.002701 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.659807 B =10362.578396 C =10913.014563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.160 3.840 3 C -0.179 4.179 4 C 0.195 3.805 5 N -0.628 5.628 6 C 0.519 3.481 7 O -0.509 6.509 8 C 0.504 3.496 9 O -0.546 6.546 10 N -0.663 5.663 11 C 0.173 3.827 12 C -0.003 4.003 13 C -0.510 4.510 14 H 0.058 0.942 15 C 0.033 3.967 16 N -0.901 5.901 17 Si 0.941 3.059 18 H -0.272 1.272 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.182 4.182 22 C -0.146 4.146 23 C -0.181 4.181 24 C 0.185 3.815 25 Cl -0.028 7.028 26 N -0.508 5.508 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.185 0.815 31 H 0.440 0.560 32 H 0.416 0.584 33 H 0.044 0.956 34 H 0.063 0.937 35 H 0.261 0.739 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.921 -9.114 -11.882 21.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.022 3.978 3 C -0.201 4.201 4 C 0.092 3.908 5 N -0.277 5.277 6 C 0.301 3.699 7 O -0.382 6.382 8 C 0.283 3.717 9 O -0.426 6.426 10 N -0.313 5.313 11 C 0.050 3.950 12 C -0.004 4.004 13 C -0.548 4.548 14 H 0.076 0.924 15 C -0.168 4.168 16 N -0.538 5.538 17 Si 0.767 3.233 18 H -0.197 1.197 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.219 4.219 22 C -0.184 4.184 23 C -0.204 4.204 24 C 0.022 3.978 25 Cl 0.001 6.999 26 N -0.222 5.222 27 H 0.118 0.882 28 H 0.097 0.903 29 H 0.123 0.877 30 H 0.202 0.798 31 H 0.282 0.718 32 H 0.253 0.747 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -16.345 -9.782 -11.634 22.321 hybrid contribution 1.151 0.262 1.178 1.667 sum -15.194 -9.521 -10.457 20.757 Atomic orbital electron populations 1.20894 0.84834 1.05092 1.04930 1.21647 0.98699 0.85764 0.91709 1.22214 0.91190 1.02072 1.04575 1.17958 0.91580 0.85148 0.96089 1.42895 1.20193 1.13882 1.50715 1.20364 0.81904 0.89088 0.78546 1.90805 1.65860 1.37035 1.44464 1.19803 0.82940 0.88540 0.80405 1.90732 1.67232 1.36146 1.48457 1.45807 1.16226 1.12416 1.56855 1.20864 0.93447 0.82510 0.98161 1.19068 0.86581 1.00164 0.94547 1.20612 1.50071 0.94180 0.89926 0.92351 1.25567 0.94229 0.95631 1.01412 1.70058 1.49343 1.08650 1.25727 0.85887 0.78705 0.78825 0.79868 1.19692 1.21304 1.20197 1.23063 1.02408 1.00526 0.95948 1.22390 1.03411 0.91694 1.00946 1.21894 1.02725 0.90534 1.05289 1.21395 0.89806 0.87518 0.99114 1.98405 1.77278 1.27846 1.96403 1.66925 1.07922 1.31614 1.15785 0.88163 0.90327 0.87712 0.79791 0.71784 0.74651 0.93808 0.91916 0.93036 0.90145 0.88970 0.90481 0.91747 0.83350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.17 71.24 0.72 -0.16 16 2 C 0.16 2.69 6.78 42.46 0.29 2.98 16 3 C -0.18 -2.76 9.69 22.49 0.22 -2.54 16 4 C 0.20 4.18 6.34 38.51 0.24 4.42 16 5 N -0.63 -13.52 5.32 -304.32 -1.62 -15.14 16 6 C 0.52 15.02 7.74 87.24 0.68 15.69 16 7 O -0.51 -16.98 13.97 -3.29 -0.05 -17.03 16 8 C 0.50 16.81 7.88 87.25 0.69 17.50 16 9 O -0.55 -19.37 16.48 -3.27 -0.05 -19.43 16 10 N -0.66 -24.61 5.40 -464.50 -2.51 -27.12 16 11 C 0.17 7.19 5.58 86.38 0.48 7.67 16 12 C 0.00 -0.13 1.61 -52.93 -0.09 -0.21 16 13 C -0.51 -25.55 8.13 25.60 0.21 -25.34 16 14 H 0.06 2.90 7.82 -2.91 -0.02 2.88 16 15 C 0.03 1.72 5.43 84.66 0.46 2.18 16 16 N -0.90 -48.87 12.65 21.45 0.27 -48.60 16 17 Si 0.94 42.03 29.54 68.60 2.03 44.05 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 21 C -0.18 -7.01 9.93 30.62 0.30 -6.70 16 22 C -0.15 -6.32 9.17 30.62 0.28 -6.04 16 23 C -0.18 -4.56 8.54 22.52 0.19 -4.36 16 24 C 0.19 4.60 7.27 84.62 0.61 5.22 16 25 Cl -0.03 -0.66 29.10 -2.72 -0.08 -0.74 16 26 N -0.51 -11.66 10.25 -175.11 -1.79 -13.46 16 27 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.10 0.44 8.08 -2.39 -0.02 0.42 16 30 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 31 H 0.44 7.26 8.32 -92.71 -0.77 6.49 16 32 H 0.42 15.57 7.49 -92.71 -0.69 14.87 16 33 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.06 2.42 8.06 -2.39 -0.02 2.40 16 35 H 0.26 13.71 8.32 -92.71 -0.77 12.94 16 36 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 37 H 0.09 3.06 8.14 -2.39 -0.02 3.05 16 38 H 0.08 3.09 8.14 -2.38 -0.02 3.07 16 39 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 40 H 0.15 4.11 6.29 -2.91 -0.02 4.09 16 Total: -1.00 -62.01 367.72 1.13 -60.87 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: -0.36 Total: 26.28 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 5.29 Total: 10.31 kcal Atomic # 7 Polarization: -98.67 SS G_CDS: -5.65 Total: -104.32 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -0.10 Total: -36.46 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.08 Total: -0.74 kcal Total: -62.01 1.13 -60.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348378359.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.134 kcal (2) G-P(sol) polarization free energy of solvation -62.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds