Wall clock time and date at job start Tue Mar 31 2020 19:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00069 * 2 1 4 4 H 1.48503 * 109.47189 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47299 * 300.00678 * 3 2 1 6 6 H 1.48507 * 109.46828 * 60.00346 * 3 2 1 7 7 C 1.37875 * 120.00310 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00335 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99860 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.49951 * 300.06800 * 9 7 2 11 11 C 1.53040 * 109.49829 * 179.97438 * 9 7 2 12 12 C 1.53046 * 109.53720 * 178.68090 * 11 9 7 13 13 C 1.53193 * 109.30880 * 61.36725 * 12 11 9 14 14 N 1.46922 * 108.89462 * 305.28904 * 13 12 11 15 15 C 1.34775 * 120.63265 * 233.67613 * 14 13 12 16 16 O 1.21360 * 120.00004 * 171.25324 * 15 14 13 17 17 C 1.49367 * 120.00180 * 351.25038 * 15 14 13 18 18 O 1.21364 * 120.00119 * 353.45864 * 17 15 14 19 19 N 1.34778 * 120.00383 * 173.44636 * 17 15 14 20 20 C 1.39388 * 120.00399 * 183.88221 * 19 17 15 21 21 C 1.39501 * 120.85426 * 145.64318 * 20 19 17 22 22 C 1.37896 * 119.09689 * 179.97438 * 21 20 19 23 23 N 1.32001 * 120.86021 * 0.02562 * 22 21 20 24 24 C 1.32046 * 121.88840 * 0.02562 * 23 22 21 25 25 Cl 1.73598 * 119.59381 * 180.02562 * 24 23 22 26 26 C 1.38136 * 120.80866 * 359.73726 * 24 23 22 27 27 C 1.47209 * 118.55303 * 53.54438 * 14 13 12 28 28 H 0.97000 * 120.00168 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.45820 * 58.66631 * 11 9 7 30 30 H 1.09000 * 109.44957 * 298.69146 * 11 9 7 31 31 H 1.08996 * 109.49920 * 301.41935 * 12 11 9 32 32 H 1.08998 * 109.49737 * 181.31196 * 12 11 9 33 33 H 1.09003 * 109.58760 * 65.15431 * 13 12 11 34 34 H 1.09008 * 109.58436 * 185.43438 * 13 12 11 35 35 H 0.97001 * 119.99416 * 3.88919 * 19 17 15 36 36 H 1.07998 * 120.45110 * 359.96260 * 21 20 19 37 37 H 1.08000 * 119.56411 * 179.97438 * 22 21 20 38 38 H 1.07996 * 120.47099 * 180.28970 * 26 24 23 39 39 H 1.09001 * 109.53204 * 186.67108 * 27 14 13 40 40 H 1.09001 * 109.67923 * 66.36839 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6237 -2.5570 0.8889 11 6 2.2451 -3.6628 -0.0018 12 6 1.4811 -4.9885 0.0314 13 6 0.6049 -5.0997 -1.2203 14 7 -0.2562 -3.9123 -1.3053 15 6 -1.5924 -4.0403 -1.4261 16 8 -2.3062 -3.0629 -1.3360 17 6 -2.1948 -5.3849 -1.6710 18 8 -1.4783 -6.3421 -1.8793 19 7 -3.5341 -5.5355 -1.6603 20 6 -4.0942 -6.8033 -1.8081 21 6 -5.2719 -7.1471 -1.1441 22 6 -5.7946 -8.4114 -1.3168 23 7 -5.1952 -9.2910 -2.0975 24 6 -4.0789 -9.0050 -2.7422 25 17 -3.3412 -10.2072 -3.7542 26 6 -3.4942 -7.7589 -2.6260 27 6 0.3722 -2.5821 -1.2525 28 1 -0.4850 0.8400 0.0004 29 1 2.8880 -3.5921 0.8756 30 1 2.8553 -3.6179 -0.9039 31 1 0.8515 -5.0234 0.9204 32 1 2.1898 -5.8163 0.0540 33 1 1.2380 -5.1561 -2.1058 34 1 -0.0131 -5.9953 -1.1553 35 1 -4.1083 -4.7615 -1.5499 36 1 -5.7675 -6.4328 -0.5034 37 1 -6.7058 -8.6857 -0.8060 38 1 -2.5837 -7.5292 -3.1595 39 1 -0.4011 -1.8152 -1.2077 40 1 0.9859 -2.4307 -2.1405 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348508609.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:03 Heat of formation + Delta-G solvation = -21.821984 kcal Electronic energy + Delta-G solvation = -26523.560296 eV Core-core repulsion = 22557.891787 eV Total energy + Delta-G solvation = -3965.668509 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.45418 -40.16107 -38.56648 -37.09215 -36.90269 -35.68378 -33.38105 -31.89701 -31.43929 -31.32446 -29.86904 -26.44803 -25.14665 -24.39872 -23.90543 -22.32936 -21.91816 -20.47597 -19.22627 -18.36274 -17.61568 -16.81799 -16.60550 -16.41095 -15.98456 -15.77485 -15.34038 -14.89825 -14.69872 -14.57938 -14.35797 -13.94718 -13.70367 -13.51338 -13.04465 -12.73479 -12.54822 -12.30479 -12.09811 -11.93158 -11.61357 -11.57178 -11.29996 -11.05737 -10.80300 -10.54544 -10.40927 -10.25205 -10.10175 -9.99183 -9.41848 -9.29729 -9.21638 -9.14240 -8.78398 -8.54076 -7.99529 -6.09444 -4.17898 0.51617 0.66000 1.49179 1.55658 2.24812 3.21448 3.24442 3.33290 3.36405 3.39042 3.59961 4.13642 4.34473 4.39556 4.50375 4.60793 4.67796 5.05297 5.21010 5.28328 5.46479 5.53098 5.58112 5.67496 5.81803 6.08520 6.15197 6.26302 6.35215 6.45933 6.59144 6.66416 6.77732 6.87806 6.93570 7.03534 7.38104 7.44762 7.54131 7.74559 7.83069 7.97826 8.21557 8.36653 8.86412 9.48267 10.95985 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.023530 B = 0.002584 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.705559 B =10833.957162 C =11582.824400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.061 0.939 9 C 0.041 3.959 10 H 0.031 0.969 11 C -0.113 4.113 12 C -0.133 4.133 13 C 0.070 3.930 14 N -0.564 5.564 15 C 0.497 3.503 16 O -0.514 6.514 17 C 0.513 3.487 18 O -0.489 6.489 19 N -0.647 5.647 20 C 0.206 3.794 21 C -0.195 4.195 22 C 0.137 3.863 23 N -0.492 5.492 24 C 0.193 3.807 25 Cl -0.026 7.026 26 C -0.161 4.161 27 C 0.108 3.892 28 H 0.264 0.736 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.123 0.877 35 H 0.430 0.570 36 H 0.150 0.850 37 H 0.171 0.829 38 H 0.162 0.838 39 H 0.125 0.875 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.620 -15.812 -4.101 18.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.079 0.921 9 C 0.022 3.978 10 H 0.049 0.951 11 C -0.151 4.151 12 C -0.172 4.172 13 C -0.052 4.052 14 N -0.296 5.296 15 C 0.277 3.723 16 O -0.391 6.391 17 C 0.297 3.703 18 O -0.363 6.363 19 N -0.294 5.294 20 C 0.102 3.898 21 C -0.217 4.217 22 C -0.020 4.020 23 N -0.205 5.205 24 C 0.029 3.971 25 Cl 0.002 6.998 26 C -0.184 4.184 27 C -0.011 4.011 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.140 0.860 35 H 0.270 0.730 36 H 0.167 0.833 37 H 0.188 0.812 38 H 0.180 0.820 39 H 0.143 0.857 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.835 -16.677 -4.381 19.850 hybrid contribution 0.673 2.011 0.095 2.123 sum -9.161 -14.666 -4.287 17.815 Atomic orbital electron populations 1.69877 1.05758 1.26841 1.49455 1.25063 0.94925 0.99367 0.94722 0.86512 0.80096 0.83605 0.77673 1.19739 1.20938 1.20958 1.21122 0.93054 0.89936 1.51660 0.92127 1.18970 0.92641 0.92604 0.93615 0.95119 1.21665 0.98576 0.94097 1.00742 1.21958 0.98649 0.99032 0.97520 1.22705 0.94713 0.89464 0.98361 1.48549 1.04112 1.10566 1.66333 1.19440 0.84230 0.87426 0.81162 1.90813 1.59870 1.38650 1.49791 1.21210 0.81933 0.90904 0.76219 1.90523 1.58868 1.41718 1.45173 1.43258 1.07635 1.08232 1.70297 1.17880 0.93035 0.85760 0.93108 1.22106 0.97860 0.99498 1.02284 1.22487 0.98297 0.87971 0.93197 1.67047 1.08625 1.36285 1.08569 1.21413 0.92035 0.89018 0.94641 1.98415 1.79778 1.56380 1.65211 1.21958 1.03591 0.92380 1.00478 1.22625 0.98874 0.80156 0.99478 0.92641 0.92897 0.93055 0.92370 0.91913 0.91752 0.86011 0.72998 0.83252 0.81174 0.82046 0.85728 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.56 11.40 55.43 0.63 -23.92 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 3 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -13.56 8.56 -34.44 -0.29 -13.85 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 9 C 0.04 0.97 2.25 -91.65 -0.21 0.76 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 11 C -0.11 -2.20 5.11 -26.69 -0.14 -2.34 16 12 C -0.13 -2.19 6.08 -26.61 -0.16 -2.36 16 13 C 0.07 1.14 5.97 -3.71 -0.02 1.12 16 14 N -0.56 -10.86 2.98 -173.08 -0.52 -11.38 16 15 C 0.50 9.11 7.73 -11.63 -0.09 9.02 16 16 O -0.51 -10.77 15.94 5.49 0.09 -10.68 16 17 C 0.51 7.50 7.60 -11.62 -0.09 7.42 16 18 O -0.49 -7.35 10.67 5.48 0.06 -7.29 16 19 N -0.65 -7.48 5.33 -10.14 -0.05 -7.54 16 20 C 0.21 2.22 6.34 -83.54 -0.53 1.69 16 21 C -0.19 -1.60 10.06 -39.24 -0.39 -1.99 16 22 C 0.14 1.13 11.17 -17.60 -0.20 0.94 16 23 N -0.49 -5.45 10.34 -10.45 -0.11 -5.56 16 24 C 0.19 2.23 7.27 -17.50 -0.13 2.11 16 25 Cl -0.03 -0.28 29.10 -51.86 -1.51 -1.79 16 26 C -0.16 -1.88 8.53 -39.20 -0.33 -2.22 16 27 C 0.11 2.47 5.42 -3.56 -0.02 2.45 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.12 1.90 4.31 -54.81 -0.24 1.67 16 35 H 0.43 4.33 8.30 -40.82 -0.34 3.99 16 36 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.16 2.01 6.32 -52.49 -0.33 1.68 16 39 H 0.12 3.28 5.15 -51.93 -0.27 3.02 16 40 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 347.27 15.07 5.23 5.23 Total: -1.00 -29.81 347.27 -8.41 -38.22 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -4.52 Total: 4.85 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -2.70 Total: 4.29 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.05 Total: -48.40 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.15 Total: -17.97 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.51 Total: -1.79 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.81 -8.41 -38.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348508609.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.402 kcal (2) G-P(sol) polarization free energy of solvation -29.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds