Wall clock time and date at job start Tue Mar 31 2020 19:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00069 * 2 1 4 4 H 1.48503 * 109.47189 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47299 * 300.00678 * 3 2 1 6 6 H 1.48507 * 109.46828 * 60.00346 * 3 2 1 7 7 C 1.37875 * 120.00310 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00335 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99860 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.49951 * 300.06800 * 9 7 2 11 11 C 1.53040 * 109.49829 * 179.97438 * 9 7 2 12 12 C 1.53046 * 109.53720 * 178.68090 * 11 9 7 13 13 C 1.53193 * 109.30880 * 61.36725 * 12 11 9 14 14 N 1.46922 * 108.89462 * 305.28904 * 13 12 11 15 15 C 1.34775 * 120.63265 * 233.67613 * 14 13 12 16 16 O 1.21360 * 120.00004 * 171.25324 * 15 14 13 17 17 C 1.49367 * 120.00180 * 351.25038 * 15 14 13 18 18 O 1.21364 * 120.00119 * 353.45864 * 17 15 14 19 19 N 1.34778 * 120.00383 * 173.44636 * 17 15 14 20 20 C 1.39388 * 120.00399 * 183.88221 * 19 17 15 21 21 C 1.39501 * 120.85426 * 145.64318 * 20 19 17 22 22 C 1.37896 * 119.09689 * 179.97438 * 21 20 19 23 23 N 1.32001 * 120.86021 * 0.02562 * 22 21 20 24 24 C 1.32046 * 121.88840 * 0.02562 * 23 22 21 25 25 Cl 1.73598 * 119.59381 * 180.02562 * 24 23 22 26 26 C 1.38136 * 120.80866 * 359.73726 * 24 23 22 27 27 C 1.47209 * 118.55303 * 53.54438 * 14 13 12 28 28 H 0.97000 * 120.00168 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.45820 * 58.66631 * 11 9 7 30 30 H 1.09000 * 109.44957 * 298.69146 * 11 9 7 31 31 H 1.08996 * 109.49920 * 301.41935 * 12 11 9 32 32 H 1.08998 * 109.49737 * 181.31196 * 12 11 9 33 33 H 1.09003 * 109.58760 * 65.15431 * 13 12 11 34 34 H 1.09008 * 109.58436 * 185.43438 * 13 12 11 35 35 H 0.97001 * 119.99416 * 3.88919 * 19 17 15 36 36 H 1.07998 * 120.45110 * 359.96260 * 21 20 19 37 37 H 1.08000 * 119.56411 * 179.97438 * 22 21 20 38 38 H 1.07996 * 120.47099 * 180.28970 * 26 24 23 39 39 H 1.09001 * 109.53204 * 186.67108 * 27 14 13 40 40 H 1.09001 * 109.67923 * 66.36839 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6237 -2.5570 0.8889 11 6 2.2451 -3.6628 -0.0018 12 6 1.4811 -4.9885 0.0314 13 6 0.6049 -5.0997 -1.2203 14 7 -0.2562 -3.9123 -1.3053 15 6 -1.5924 -4.0403 -1.4261 16 8 -2.3062 -3.0629 -1.3360 17 6 -2.1948 -5.3849 -1.6710 18 8 -1.4783 -6.3421 -1.8793 19 7 -3.5341 -5.5355 -1.6603 20 6 -4.0942 -6.8033 -1.8081 21 6 -5.2719 -7.1471 -1.1441 22 6 -5.7946 -8.4114 -1.3168 23 7 -5.1952 -9.2910 -2.0975 24 6 -4.0789 -9.0050 -2.7422 25 17 -3.3412 -10.2072 -3.7542 26 6 -3.4942 -7.7589 -2.6260 27 6 0.3722 -2.5821 -1.2525 28 1 -0.4850 0.8400 0.0004 29 1 2.8880 -3.5921 0.8756 30 1 2.8553 -3.6179 -0.9039 31 1 0.8515 -5.0234 0.9204 32 1 2.1898 -5.8163 0.0540 33 1 1.2380 -5.1561 -2.1058 34 1 -0.0131 -5.9953 -1.1553 35 1 -4.1083 -4.7615 -1.5499 36 1 -5.7675 -6.4328 -0.5034 37 1 -6.7058 -8.6857 -0.8060 38 1 -2.5837 -7.5292 -3.1595 39 1 -0.4011 -1.8152 -1.2077 40 1 0.9859 -2.4307 -2.1405 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348508609.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:02 Heat of formation + Delta-G solvation = -41.127186 kcal Electronic energy + Delta-G solvation = -26524.397432 eV Core-core repulsion = 22557.891787 eV Total energy + Delta-G solvation = -3966.505646 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.54584 -41.22198 -39.85900 -38.60744 -37.75418 -36.74119 -35.20495 -33.51785 -32.29176 -32.12589 -31.59662 -27.90778 -26.92346 -25.53657 -24.78193 -23.60948 -23.36945 -21.77197 -20.70494 -19.42402 -18.87781 -18.40321 -17.81509 -17.59032 -17.15692 -16.94597 -16.59112 -16.36396 -15.94967 -15.66439 -15.52350 -15.10263 -14.97404 -14.85803 -14.66101 -14.42431 -13.96770 -13.57267 -13.41057 -13.06786 -12.90557 -12.84959 -12.51894 -12.38933 -12.30899 -12.20362 -12.15385 -11.77471 -11.66840 -11.18689 -11.00478 -10.87763 -10.55378 -10.31597 -10.05912 -9.99686 -9.60513 -8.12265 -6.28236 -0.37301 -0.13477 0.37427 0.70122 1.07813 1.41026 1.43556 1.54471 1.94996 2.32274 2.43123 2.55323 3.05155 3.16866 3.47547 3.72990 3.79635 3.99369 4.07753 4.14413 4.24260 4.34832 4.54927 4.58633 4.68951 4.77347 4.80863 4.82002 5.04139 5.05371 5.17845 5.21495 5.29583 5.39356 5.46305 5.56630 5.70998 5.85176 5.93613 6.25593 6.33623 6.47689 6.63958 6.79779 6.86421 7.41706 8.91651 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.023530 B = 0.002584 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.705559 B =10833.957162 C =11582.824400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.534 4.534 8 H 0.061 0.939 9 C 0.039 3.961 10 H -0.008 1.008 11 C -0.107 4.107 12 C -0.126 4.126 13 C 0.070 3.930 14 N -0.572 5.572 15 C 0.492 3.508 16 O -0.548 6.548 17 C 0.526 3.474 18 O -0.492 6.492 19 N -0.631 5.631 20 C 0.189 3.811 21 C -0.176 4.176 22 C 0.141 3.859 23 N -0.508 5.508 24 C 0.180 3.820 25 Cl -0.029 7.029 26 C -0.171 4.171 27 C 0.121 3.879 28 H 0.262 0.738 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.137 0.863 35 H 0.438 0.562 36 H 0.183 0.817 37 H 0.211 0.789 38 H 0.150 0.850 39 H 0.087 0.913 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.118 -17.267 -3.853 20.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.187 4.187 3 Si 0.782 3.218 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.020 3.980 10 H 0.010 0.990 11 C -0.145 4.145 12 C -0.164 4.164 13 C -0.051 4.051 14 N -0.303 5.303 15 C 0.274 3.726 16 O -0.427 6.427 17 C 0.309 3.691 18 O -0.367 6.367 19 N -0.278 5.278 20 C 0.085 3.915 21 C -0.198 4.198 22 C -0.015 4.015 23 N -0.221 5.221 24 C 0.016 3.984 25 Cl -0.001 7.001 26 C -0.194 4.194 27 C 0.000 4.000 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.118 0.882 33 H 0.095 0.905 34 H 0.154 0.846 35 H 0.279 0.721 36 H 0.200 0.800 37 H 0.227 0.773 38 H 0.168 0.832 39 H 0.106 0.894 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.341 -18.176 -4.139 21.317 hybrid contribution 0.721 2.418 0.044 2.524 sum -9.620 -15.757 -4.095 18.911 Atomic orbital electron populations 1.70042 1.07190 1.27333 1.50513 1.25833 0.95621 1.02685 0.94516 0.85530 0.79214 0.79591 0.77473 1.18784 1.20732 1.20894 1.21501 0.93309 0.91287 1.51181 0.92038 1.18899 0.93064 0.93791 0.92244 0.99012 1.21558 0.97791 0.94034 1.01101 1.21927 0.98908 0.98406 0.97171 1.22918 0.94724 0.88510 0.98903 1.48518 1.05062 1.10090 1.66661 1.20042 0.83763 0.88821 0.79962 1.90789 1.60570 1.40378 1.50928 1.20243 0.83040 0.88872 0.76956 1.90514 1.59288 1.41019 1.45884 1.43014 1.06375 1.09210 1.69218 1.18051 0.94232 0.84927 0.94243 1.22467 0.96242 1.00021 1.01055 1.23201 0.98904 0.87382 0.92025 1.67107 1.08528 1.37372 1.09104 1.21446 0.92579 0.89023 0.95311 1.98407 1.79924 1.56377 1.65342 1.21883 1.03540 0.92878 1.01099 1.22055 0.97627 0.81475 0.98822 0.92925 0.92801 0.92347 0.93187 0.88194 0.90456 0.84650 0.72105 0.80018 0.77269 0.83230 0.89439 0.93280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.65 11.40 21.45 0.24 -52.41 16 2 C 0.01 0.71 5.30 84.65 0.45 1.16 16 3 Si 0.96 42.79 29.54 68.60 2.03 44.82 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.53 -28.46 8.56 25.60 0.22 -28.24 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.04 1.91 2.25 -11.46 -0.03 1.89 16 10 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 11 C -0.11 -4.11 5.11 30.62 0.16 -3.95 16 12 C -0.13 -3.94 6.08 30.67 0.19 -3.75 16 13 C 0.07 2.20 5.97 86.36 0.52 2.72 16 14 N -0.57 -22.27 2.98 -819.84 -2.45 -24.72 16 15 C 0.49 18.28 7.73 87.24 0.67 18.95 16 16 O -0.55 -23.70 15.94 -3.28 -0.05 -23.75 16 17 C 0.53 14.99 7.60 87.24 0.66 15.65 16 18 O -0.49 -14.22 10.67 -3.29 -0.04 -14.25 16 19 N -0.63 -13.75 5.33 -304.33 -1.62 -15.37 16 20 C 0.19 3.68 6.34 38.51 0.24 3.92 16 21 C -0.18 -2.28 10.06 22.49 0.23 -2.05 16 22 C 0.14 1.83 11.17 84.59 0.94 2.78 16 23 N -0.51 -10.10 10.34 -186.96 -1.93 -12.03 16 24 C 0.18 3.93 7.27 84.64 0.62 4.55 16 25 Cl -0.03 -0.61 29.10 -2.72 -0.08 -0.69 16 26 C -0.17 -3.80 8.53 22.51 0.19 -3.61 16 27 C 0.12 5.74 5.42 86.31 0.47 6.21 16 28 H 0.26 14.48 8.31 -92.71 -0.77 13.70 16 29 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.14 3.98 4.31 -48.12 -0.21 3.78 16 35 H 0.44 8.26 8.30 -92.71 -0.77 7.49 16 36 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 37 H 0.21 0.97 8.06 -2.91 -0.02 0.95 16 38 H 0.15 3.65 6.32 -2.91 -0.02 3.64 16 39 H 0.09 4.85 5.15 -2.39 -0.01 4.84 16 40 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -67.22 347.27 1.77 -65.45 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.14 Total: 16.72 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: 5.53 Total: 16.24 kcal Atomic # 7 Polarization: -98.77 SS G_CDS: -5.76 Total: -104.53 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -0.09 Total: -38.00 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.69 kcal Total: -67.22 1.77 -65.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348508609.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.326 kcal (2) G-P(sol) polarization free energy of solvation -67.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds