Wall clock time and date at job start Tue Mar 31 2020 19:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00154 * 2 1 4 4 H 1.48499 * 109.47172 * 239.99653 * 3 2 1 5 5 H 1.48500 * 109.47232 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46954 * 119.99444 * 3 2 1 7 7 C 1.37878 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99841 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00179 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.49991 * 59.92872 * 9 7 2 11 11 C 1.53042 * 109.50026 * 179.97438 * 9 7 2 12 12 C 1.53042 * 109.53978 * 181.34986 * 11 9 7 13 13 C 1.53195 * 109.30952 * 298.63635 * 12 11 9 14 14 N 1.46921 * 108.77816 * 54.63473 * 13 12 11 15 15 C 1.34778 * 120.63300 * 126.36544 * 14 13 12 16 16 O 1.21349 * 120.00366 * 176.47727 * 15 14 13 17 17 C 1.49374 * 119.99591 * 356.48223 * 15 14 13 18 18 O 1.21360 * 120.00253 * 6.98577 * 17 15 14 19 19 N 1.34778 * 119.99665 * 186.98287 * 17 15 14 20 20 C 1.39393 * 119.99821 * 185.10473 * 19 17 15 21 21 C 1.39498 * 120.85874 * 207.30717 * 20 19 17 22 22 C 1.37887 * 119.10255 * 180.02562 * 21 20 19 23 23 N 1.32007 * 120.85915 * 359.72815 * 22 21 20 24 24 C 1.32041 * 121.88477 * 0.56557 * 23 22 21 25 25 Cl 1.73600 * 119.59700 * 179.70929 * 24 23 22 26 26 C 1.38135 * 120.81204 * 359.43677 * 24 23 22 27 27 C 1.46926 * 118.74110 * 306.64483 * 14 13 12 28 28 H 0.96998 * 119.99656 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.45914 * 61.33059 * 11 9 7 30 30 H 1.09003 * 109.45729 * 301.36986 * 11 9 7 31 31 H 1.08995 * 109.49716 * 178.68491 * 12 11 9 32 32 H 1.09002 * 109.49650 * 58.58381 * 12 11 9 33 33 H 1.08998 * 109.58561 * 294.84395 * 13 12 11 34 34 H 1.08999 * 109.58375 * 174.42088 * 13 12 11 35 35 H 0.96994 * 120.00154 * 5.11484 * 19 17 15 36 36 H 1.07998 * 120.44824 * 0.05380 * 21 20 19 37 37 H 1.07997 * 119.57285 * 180.02562 * 22 21 20 38 38 H 1.08005 * 120.47633 * 180.25618 * 26 24 23 39 39 H 1.08993 * 109.59168 * 173.14581 * 27 14 13 40 40 H 1.09003 * 109.58120 * 293.56826 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6235 -2.5570 -0.8889 11 6 2.2449 -3.6629 0.0005 12 6 1.4809 -4.9885 -0.0334 13 6 0.6051 -5.1007 1.2184 14 7 -0.2535 -3.9114 1.3030 15 6 -1.5900 -4.0365 1.4240 16 8 -2.2823 -3.0488 1.5572 17 6 -2.2190 -5.3910 1.3941 18 8 -1.5215 -6.3840 1.3888 19 7 -3.5614 -5.5102 1.3731 20 6 -4.1504 -6.7710 1.4527 21 6 -5.4047 -7.0115 0.8916 22 6 -5.9537 -8.2724 0.9919 23 7 -5.3060 -9.2462 1.6042 24 6 -4.1199 -9.0577 2.1529 25 17 -3.3243 -10.3788 2.9501 26 6 -3.5017 -7.8237 2.0955 27 6 0.3720 -2.5831 1.2471 28 1 -0.4849 0.8401 -0.0004 29 1 2.8556 -3.6188 0.9022 30 1 2.8876 -3.5915 -0.8770 31 1 2.1896 -5.8163 -0.0570 32 1 0.8510 -5.0227 -0.9224 33 1 1.2385 -5.1578 2.1036 34 1 -0.0148 -5.9948 1.1518 35 1 -4.1175 -4.7187 1.3024 36 1 -5.9383 -6.2210 0.3850 37 1 -6.9241 -8.4671 0.5599 38 1 -2.5296 -7.6767 2.5426 39 1 -0.4015 -1.8167 1.1994 40 1 0.9860 -2.4308 2.1347 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348508611.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:07 Heat of formation + Delta-G solvation = -16.891072 kcal Electronic energy + Delta-G solvation = -26567.228519 eV Core-core repulsion = 22601.773830 eV Total energy + Delta-G solvation = -3965.454689 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.51442 -40.17936 -38.59243 -37.13429 -36.90013 -35.72156 -33.38157 -31.89099 -31.43680 -31.33891 -29.87668 -26.47482 -25.15908 -24.41094 -23.91146 -22.33921 -21.91821 -20.55952 -19.18806 -18.37138 -17.69829 -16.83319 -16.50820 -16.41977 -15.97629 -15.75154 -15.39484 -14.96249 -14.75612 -14.59731 -14.33875 -13.94840 -13.85406 -13.48224 -13.03990 -12.72561 -12.56582 -12.29534 -12.11222 -11.93057 -11.62344 -11.57007 -11.38099 -11.02842 -10.81309 -10.56545 -10.38490 -10.21484 -10.09142 -10.00011 -9.40928 -9.30189 -9.21015 -9.11339 -8.69114 -8.52288 -8.00630 -6.10249 -4.18459 0.51056 0.65260 1.49595 1.57707 2.21027 3.21272 3.26492 3.32418 3.33941 3.41161 3.58545 4.13399 4.33571 4.38525 4.48924 4.60944 4.66263 5.02927 5.20612 5.27878 5.48200 5.55403 5.56649 5.65637 5.84812 6.09507 6.15842 6.27947 6.42451 6.47120 6.61021 6.65734 6.77900 6.88240 6.94610 7.03436 7.39288 7.46320 7.55063 7.74371 7.82810 7.97600 8.20735 8.36521 8.85360 9.47588 10.95441 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.023345 B = 0.002626 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.128914 B =10661.857345 C =11511.263580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.063 3.937 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.041 3.959 10 H 0.029 0.971 11 C -0.114 4.114 12 C -0.131 4.131 13 C 0.046 3.954 14 N -0.559 5.559 15 C 0.496 3.504 16 O -0.518 6.518 17 C 0.516 3.484 18 O -0.485 6.485 19 N -0.643 5.643 20 C 0.210 3.790 21 C -0.199 4.199 22 C 0.140 3.860 23 N -0.495 5.495 24 C 0.195 3.805 25 Cl -0.026 7.026 26 C -0.168 4.168 27 C 0.107 3.893 28 H 0.265 0.735 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.144 0.856 35 H 0.431 0.569 36 H 0.150 0.850 37 H 0.171 0.829 38 H 0.164 0.836 39 H 0.125 0.875 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.863 -15.753 3.392 18.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.078 0.922 9 C 0.022 3.978 10 H 0.047 0.953 11 C -0.152 4.152 12 C -0.169 4.169 13 C -0.076 4.076 14 N -0.291 5.291 15 C 0.276 3.724 16 O -0.395 6.395 17 C 0.301 3.699 18 O -0.359 6.359 19 N -0.289 5.289 20 C 0.105 3.895 21 C -0.222 4.222 22 C -0.017 4.017 23 N -0.208 5.208 24 C 0.031 3.969 25 Cl 0.002 6.998 26 C -0.191 4.191 27 C -0.013 4.013 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.160 0.840 35 H 0.270 0.730 36 H 0.167 0.833 37 H 0.188 0.812 38 H 0.182 0.818 39 H 0.143 0.857 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.094 -16.632 3.600 19.786 hybrid contribution 0.768 2.056 -0.080 2.196 sum -9.327 -14.577 3.520 17.659 Atomic orbital electron populations 1.69845 1.05800 1.27105 1.49350 1.25058 0.94932 0.99370 0.94665 0.86608 0.79571 0.82891 0.78671 1.20216 1.21209 1.20185 1.21046 0.92998 0.89946 1.51863 0.92211 1.18893 0.92668 0.92635 0.93603 0.95256 1.21671 0.98580 0.94211 1.00690 1.21908 0.98575 0.98844 0.97554 1.23195 0.95419 0.90653 0.98295 1.48516 1.04072 1.10627 1.65865 1.19386 0.84227 0.87447 0.81305 1.90801 1.61485 1.37918 1.49274 1.21273 0.81959 0.91596 0.75098 1.90319 1.59208 1.39971 1.46409 1.43295 1.07428 1.07920 1.70263 1.17907 0.92601 0.85561 0.93425 1.22034 0.96408 1.00225 1.03547 1.22475 0.98822 0.86949 0.93466 1.67050 1.07727 1.35362 1.10637 1.21396 0.91155 0.88422 0.95882 1.98415 1.77061 1.47330 1.76959 1.21954 1.03705 0.91324 1.02131 1.22504 0.98971 0.80304 0.99487 0.92507 0.93105 0.92946 0.92012 0.92423 0.91983 0.84020 0.72953 0.83271 0.81185 0.81850 0.85683 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.60 11.39 55.43 0.63 -23.97 16 2 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 3 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -13.62 8.56 -34.44 -0.29 -13.92 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.98 2.24 -91.88 -0.21 0.77 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.23 5.11 -26.69 -0.14 -2.37 16 12 C -0.13 -2.17 6.08 -26.61 -0.16 -2.33 16 13 C 0.05 0.75 6.26 -3.71 -0.02 0.73 16 14 N -0.56 -10.80 2.98 -173.57 -0.52 -11.32 16 15 C 0.50 9.08 7.75 -11.62 -0.09 8.99 16 16 O -0.52 -10.78 15.94 5.50 0.09 -10.69 16 17 C 0.52 7.51 7.61 -11.62 -0.09 7.42 16 18 O -0.48 -7.19 10.37 5.49 0.06 -7.13 16 19 N -0.64 -7.42 5.34 -10.13 -0.05 -7.47 16 20 C 0.21 2.25 6.43 -83.53 -0.54 1.71 16 21 C -0.20 -1.62 10.05 -39.24 -0.39 -2.01 16 22 C 0.14 1.15 11.17 -17.60 -0.20 0.95 16 23 N -0.49 -5.48 10.34 -10.45 -0.11 -5.59 16 24 C 0.20 2.26 7.27 -17.50 -0.13 2.14 16 25 Cl -0.03 -0.28 29.10 -51.86 -1.51 -1.79 16 26 C -0.17 -1.97 8.53 -39.20 -0.33 -2.30 16 27 C 0.11 2.46 5.37 -3.93 -0.02 2.43 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.14 2.21 3.73 -57.12 -0.21 2.00 16 35 H 0.43 4.31 8.32 -40.82 -0.34 3.97 16 36 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.16 2.03 6.08 -52.48 -0.32 1.71 16 39 H 0.13 3.31 5.14 -51.93 -0.27 3.04 16 40 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 346.47 15.07 5.22 5.22 Total: -1.00 -29.76 346.47 -8.40 -38.16 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -4.48 Total: 5.19 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -2.71 Total: 3.79 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -0.05 Total: -48.35 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: 0.14 Total: -17.82 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.51 Total: -1.79 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.76 -8.40 -38.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348508611.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.267 kcal (2) G-P(sol) polarization free energy of solvation -29.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds