Wall clock time and date at job start Tue Mar 31 2020 19:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00154 * 2 1 4 4 H 1.48499 * 109.47172 * 239.99653 * 3 2 1 5 5 H 1.48500 * 109.47232 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46954 * 119.99444 * 3 2 1 7 7 C 1.37878 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99841 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00179 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.49991 * 59.92872 * 9 7 2 11 11 C 1.53042 * 109.50026 * 179.97438 * 9 7 2 12 12 C 1.53042 * 109.53978 * 181.34986 * 11 9 7 13 13 C 1.53195 * 109.30952 * 298.63635 * 12 11 9 14 14 N 1.46921 * 108.77816 * 54.63473 * 13 12 11 15 15 C 1.34778 * 120.63300 * 126.36544 * 14 13 12 16 16 O 1.21349 * 120.00366 * 176.47727 * 15 14 13 17 17 C 1.49374 * 119.99591 * 356.48223 * 15 14 13 18 18 O 1.21360 * 120.00253 * 6.98577 * 17 15 14 19 19 N 1.34778 * 119.99665 * 186.98287 * 17 15 14 20 20 C 1.39393 * 119.99821 * 185.10473 * 19 17 15 21 21 C 1.39498 * 120.85874 * 207.30717 * 20 19 17 22 22 C 1.37887 * 119.10255 * 180.02562 * 21 20 19 23 23 N 1.32007 * 120.85915 * 359.72815 * 22 21 20 24 24 C 1.32041 * 121.88477 * 0.56557 * 23 22 21 25 25 Cl 1.73600 * 119.59700 * 179.70929 * 24 23 22 26 26 C 1.38135 * 120.81204 * 359.43677 * 24 23 22 27 27 C 1.46926 * 118.74110 * 306.64483 * 14 13 12 28 28 H 0.96998 * 119.99656 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.45914 * 61.33059 * 11 9 7 30 30 H 1.09003 * 109.45729 * 301.36986 * 11 9 7 31 31 H 1.08995 * 109.49716 * 178.68491 * 12 11 9 32 32 H 1.09002 * 109.49650 * 58.58381 * 12 11 9 33 33 H 1.08998 * 109.58561 * 294.84395 * 13 12 11 34 34 H 1.08999 * 109.58375 * 174.42088 * 13 12 11 35 35 H 0.96994 * 120.00154 * 5.11484 * 19 17 15 36 36 H 1.07998 * 120.44824 * 0.05380 * 21 20 19 37 37 H 1.07997 * 119.57285 * 180.02562 * 22 21 20 38 38 H 1.08005 * 120.47633 * 180.25618 * 26 24 23 39 39 H 1.08993 * 109.59168 * 173.14581 * 27 14 13 40 40 H 1.09003 * 109.58120 * 293.56826 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6235 -2.5570 -0.8889 11 6 2.2449 -3.6629 0.0005 12 6 1.4809 -4.9885 -0.0334 13 6 0.6051 -5.1007 1.2184 14 7 -0.2535 -3.9114 1.3030 15 6 -1.5900 -4.0365 1.4240 16 8 -2.2823 -3.0488 1.5572 17 6 -2.2190 -5.3910 1.3941 18 8 -1.5215 -6.3840 1.3888 19 7 -3.5614 -5.5102 1.3731 20 6 -4.1504 -6.7710 1.4527 21 6 -5.4047 -7.0115 0.8916 22 6 -5.9537 -8.2724 0.9919 23 7 -5.3060 -9.2462 1.6042 24 6 -4.1199 -9.0577 2.1529 25 17 -3.3243 -10.3788 2.9501 26 6 -3.5017 -7.8237 2.0955 27 6 0.3720 -2.5831 1.2471 28 1 -0.4849 0.8401 -0.0004 29 1 2.8556 -3.6188 0.9022 30 1 2.8876 -3.5915 -0.8770 31 1 2.1896 -5.8163 -0.0570 32 1 0.8510 -5.0227 -0.9224 33 1 1.2385 -5.1578 2.1036 34 1 -0.0148 -5.9948 1.1518 35 1 -4.1175 -4.7187 1.3024 36 1 -5.9383 -6.2210 0.3850 37 1 -6.9241 -8.4671 0.5599 38 1 -2.5296 -7.6767 2.5426 39 1 -0.4015 -1.8167 1.1994 40 1 0.9860 -2.4308 2.1347 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348508611.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:06 Heat of formation + Delta-G solvation = -36.246078 kcal Electronic energy + Delta-G solvation = -26568.067815 eV Core-core repulsion = 22601.773830 eV Total energy + Delta-G solvation = -3966.293985 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.61071 -41.23195 -39.88540 -38.64607 -37.75330 -36.78209 -35.20558 -33.51919 -32.29723 -32.12721 -31.60871 -27.92843 -26.93892 -25.54429 -24.79920 -23.61697 -23.38105 -21.84086 -20.68424 -19.44461 -18.93657 -18.41113 -17.80677 -17.53416 -17.17559 -16.91755 -16.59776 -16.42357 -15.97513 -15.66008 -15.57735 -15.27540 -14.95102 -14.82687 -14.64054 -14.45800 -13.93733 -13.56219 -13.42666 -13.12865 -12.87005 -12.85294 -12.54376 -12.38793 -12.30717 -12.25308 -12.18941 -11.75443 -11.67442 -11.20776 -11.00727 -10.86518 -10.54847 -10.23726 -10.00771 -9.94331 -9.61594 -8.13248 -6.29091 -0.40394 -0.13375 0.42227 0.70810 1.04134 1.42987 1.43576 1.51618 1.94878 2.31744 2.42680 2.57245 3.01732 3.16259 3.47205 3.72441 3.79838 3.97406 4.07916 4.15529 4.22917 4.36554 4.54813 4.58318 4.70080 4.76609 4.79997 4.81214 5.04427 5.08286 5.19925 5.21420 5.31548 5.39212 5.49384 5.55480 5.70308 5.84485 5.92920 6.25697 6.34332 6.47182 6.65254 6.78042 6.85823 7.40759 8.90592 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.023345 B = 0.002626 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.128914 B =10661.857345 C =11511.263580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.014 3.986 3 Si 0.957 3.043 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.040 3.960 10 H -0.008 1.008 11 C -0.108 4.108 12 C -0.124 4.124 13 C 0.046 3.954 14 N -0.568 5.568 15 C 0.491 3.509 16 O -0.550 6.550 17 C 0.528 3.472 18 O -0.487 6.487 19 N -0.627 5.627 20 C 0.192 3.808 21 C -0.180 4.180 22 C 0.143 3.857 23 N -0.510 5.510 24 C 0.182 3.818 25 Cl -0.029 7.029 26 C -0.178 4.178 27 C 0.121 3.879 28 H 0.262 0.738 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.098 0.902 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.158 0.842 35 H 0.438 0.562 36 H 0.184 0.816 37 H 0.211 0.789 38 H 0.153 0.847 39 H 0.088 0.912 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.500 -17.086 3.131 20.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.186 4.186 3 Si 0.782 3.218 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.575 4.575 8 H 0.080 0.920 9 C 0.021 3.979 10 H 0.010 0.990 11 C -0.146 4.146 12 C -0.162 4.162 13 C -0.074 4.074 14 N -0.299 5.299 15 C 0.273 3.727 16 O -0.429 6.429 17 C 0.312 3.688 18 O -0.362 6.362 19 N -0.273 5.273 20 C 0.088 3.912 21 C -0.202 4.202 22 C -0.013 4.013 23 N -0.224 5.224 24 C 0.019 3.981 25 Cl 0.000 7.000 26 C -0.202 4.202 27 C -0.001 4.001 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.116 0.884 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.174 0.826 35 H 0.280 0.720 36 H 0.201 0.799 37 H 0.227 0.773 38 H 0.170 0.830 39 H 0.106 0.894 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.740 -18.009 3.341 21.233 hybrid contribution 0.852 2.424 -0.018 2.569 sum -9.888 -15.585 3.323 18.754 Atomic orbital electron populations 1.70013 1.07217 1.27530 1.50383 1.25834 0.95638 1.02700 0.94423 0.85628 0.78337 0.78854 0.78965 1.19556 1.21246 1.19388 1.21445 0.93318 0.91311 1.51457 0.92044 1.18821 0.93085 0.93789 0.92241 0.99017 1.21567 0.97810 0.94181 1.00999 1.21876 0.98834 0.98198 0.97252 1.23432 0.95476 0.89721 0.98786 1.48487 1.05053 1.10103 1.66256 1.19990 0.83778 0.88912 0.80034 1.90776 1.62131 1.39642 1.50333 1.20285 0.83058 0.89474 0.76018 1.90298 1.59592 1.39147 1.47144 1.43043 1.06145 1.08922 1.69215 1.18080 0.93768 0.84621 0.94718 1.22412 0.94918 1.01114 1.01754 1.23194 0.99763 0.86253 0.92122 1.67108 1.07594 1.36626 1.11053 1.21431 0.91659 0.88395 0.96650 1.98407 1.77219 1.47343 1.77065 1.21890 1.03573 0.91887 1.02803 1.21925 0.97710 0.81685 0.98754 0.92863 0.92475 0.92865 0.88377 0.93276 0.90674 0.82599 0.72037 0.79917 0.77277 0.82972 0.89353 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.68 11.39 21.45 0.24 -52.43 16 2 C 0.01 0.75 5.31 84.66 0.45 1.20 16 3 Si 0.96 42.80 29.54 68.60 2.03 44.83 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.54 -28.71 8.56 25.60 0.22 -28.49 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.04 1.95 2.24 -11.61 -0.03 1.92 16 10 H -0.01 -0.47 8.14 -2.38 -0.02 -0.48 16 11 C -0.11 -4.18 5.11 30.62 0.16 -4.02 16 12 C -0.12 -3.91 6.08 30.67 0.19 -3.73 16 13 C 0.05 1.45 6.26 86.36 0.54 1.99 16 14 N -0.57 -22.21 2.98 -821.42 -2.45 -24.66 16 15 C 0.49 18.23 7.75 87.25 0.68 18.90 16 16 O -0.55 -23.64 15.94 -3.24 -0.05 -23.69 16 17 C 0.53 15.00 7.61 87.25 0.66 15.66 16 18 O -0.49 -13.87 10.37 -3.28 -0.03 -13.90 16 19 N -0.63 -13.61 5.34 -304.32 -1.62 -15.23 16 20 C 0.19 3.72 6.43 38.51 0.25 3.97 16 21 C -0.18 -2.30 10.05 22.49 0.23 -2.07 16 22 C 0.14 1.85 11.17 84.58 0.94 2.79 16 23 N -0.51 -10.16 10.34 -186.97 -1.93 -12.09 16 24 C 0.18 3.99 7.27 84.64 0.62 4.60 16 25 Cl -0.03 -0.60 29.10 -2.72 -0.08 -0.68 16 26 C -0.18 -3.96 8.53 22.52 0.19 -3.77 16 27 C 0.12 5.75 5.37 86.22 0.46 6.21 16 28 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 29 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.16 4.60 3.73 -84.55 -0.32 4.28 16 35 H 0.44 8.19 8.32 -92.71 -0.77 7.42 16 36 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 37 H 0.21 0.96 8.06 -2.91 -0.02 0.93 16 38 H 0.15 3.69 6.08 -2.91 -0.02 3.68 16 39 H 0.09 4.92 5.14 -2.39 -0.01 4.90 16 40 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -67.13 346.47 1.69 -65.45 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.03 Total: 17.24 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 5.55 Total: 15.18 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -5.76 Total: -104.42 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -0.09 Total: -37.59 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.68 kcal Total: -67.13 1.69 -65.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348508611.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.200 kcal (2) G-P(sol) polarization free energy of solvation -67.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds