Wall clock time and date at job start Tue Mar 31 2020 19:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86806 * 119.99626 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99596 * 3 2 1 5 5 H 1.48495 * 109.47251 * 30.00209 * 3 2 1 6 6 H 1.48502 * 109.46845 * 150.00216 * 3 2 1 7 7 C 1.38794 * 120.00324 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00321 * 180.02562 * 7 2 1 9 9 S 1.76208 * 119.99748 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99847 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47130 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00099 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00357 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00276 * 180.02562 * 13 11 10 15 15 C 1.53499 * 114.20413 * 154.99378 * 14 13 11 16 16 N 1.47066 * 87.98199 * 87.52380 * 15 14 13 17 17 C 1.34778 * 136.05656 * 207.08735 * 16 15 14 18 18 O 1.21570 * 120.00203 * 359.97438 * 17 16 15 19 19 C 1.47733 * 120.00026 * 179.97438 * 17 16 15 20 20 N 1.33015 * 120.16502 * 354.58052 * 19 17 16 21 21 C 1.31728 * 120.01466 * 180.25480 * 20 19 17 22 22 C 1.38802 * 120.33618 * 359.75907 * 21 20 19 23 23 N 1.32026 * 120.33105 * 359.97438 * 22 21 20 24 24 C 1.32828 * 119.98147 * 359.97438 * 23 22 21 25 25 N 1.38274 * 120.16781 * 180.02562 * 24 23 22 26 26 C 1.47069 * 87.88645 * 27.33826 * 16 15 14 27 27 H 0.97006 * 119.99910 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47349 * 59.99884 * 10 9 7 29 29 H 1.09001 * 109.47135 * 300.00302 * 10 9 7 30 30 H 0.97003 * 119.99310 * 359.97438 * 13 11 10 31 31 H 1.09000 * 113.41489 * 21.79761 * 14 13 11 32 32 H 1.08990 * 113.47412 * 332.74291 * 15 14 13 33 33 H 1.09000 * 113.46355 * 202.29664 * 15 14 13 34 34 H 1.07994 * 119.83458 * 179.72757 * 21 20 19 35 35 H 1.08007 * 119.83196 * 179.97438 * 22 21 20 36 36 H 0.97003 * 119.99619 * 156.37529 * 25 24 23 37 37 H 0.96995 * 119.99933 * 336.37029 * 25 24 23 38 38 H 1.09000 * 113.46390 * 87.44290 * 26 16 15 39 39 H 1.09005 * 113.46800 * 217.87604 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8442 -6.3431 -0.0008 14 6 2.3305 -7.7150 -0.0019 15 6 3.2987 -8.7490 -0.5932 16 7 3.8884 -8.8865 0.7470 17 6 5.0917 -9.2304 1.2472 18 8 6.0014 -9.5229 0.4956 19 6 5.3054 -9.2518 2.7088 20 7 4.3483 -8.8298 3.5305 21 6 4.5438 -8.8455 4.8331 22 6 5.7443 -9.3058 5.3563 23 7 6.7014 -9.7328 4.5533 24 6 6.5176 -9.7236 3.2379 25 7 7.5172 -10.1703 2.3934 26 6 2.5853 -8.4896 1.3015 27 1 -0.4850 0.8401 0.0004 28 1 3.1246 -3.7313 0.8894 29 1 3.1246 -3.7312 -0.8905 30 1 3.8010 -6.1834 -0.0004 31 1 1.3093 -7.7948 -0.3745 32 1 3.9854 -8.3300 -1.3287 33 1 2.8047 -9.6547 -0.9450 34 1 3.7665 -8.4980 5.4973 35 1 5.8961 -9.3148 6.4256 36 1 7.2949 -10.4880 1.5042 37 1 8.4407 -10.1660 2.6902 38 1 1.9033 -9.3270 1.4492 39 1 2.6642 -7.8495 2.1803 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356743593.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:36 Heat of formation + Delta-G solvation = 35.701367 kcal Electronic energy + Delta-G solvation = -25568.112032 eV Core-core repulsion = 21639.274380 eV Total energy + Delta-G solvation = -3928.837652 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.66804 -40.63622 -38.98132 -37.93270 -35.77348 -34.07605 -33.50741 -32.43914 -30.77454 -29.69638 -28.37540 -26.38470 -25.65422 -25.46999 -23.91482 -22.32775 -20.69823 -19.75514 -18.69475 -17.95697 -17.91057 -17.62122 -16.94606 -16.64658 -16.12758 -15.88316 -15.55064 -15.26901 -14.95844 -14.87179 -14.80874 -14.13090 -14.06297 -13.49310 -13.41975 -13.22664 -13.05657 -12.55165 -12.30997 -12.08293 -11.95616 -11.92664 -11.16515 -11.07111 -11.03522 -10.95829 -10.77675 -10.54871 -9.83722 -9.55038 -9.51273 -9.14510 -9.08155 -8.97452 -8.47416 -8.26286 -6.51585 -6.22966 -3.93592 0.14041 0.85734 2.30214 2.43103 2.91967 2.95587 3.04697 3.21920 3.26445 3.30374 3.43843 3.60802 3.67778 3.95148 4.03779 4.19226 4.23350 4.58201 4.69834 4.76081 4.89200 5.03310 5.04925 5.11027 5.12440 5.31944 5.34218 5.50550 5.63347 5.80016 5.85807 5.87184 6.12090 6.53335 6.57759 6.87316 7.07581 7.27190 7.58313 7.60217 7.63289 7.75004 8.34178 8.51257 9.22647 10.84418 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.014942 B = 0.002389 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.466308 B =11716.437133 C =12484.270166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.057 6.057 10 C -0.154 4.154 11 C 0.538 3.462 12 O -0.513 6.513 13 N -0.717 5.717 14 C 0.111 3.889 15 C 0.096 3.904 16 N -0.625 5.625 17 C 0.613 3.387 18 O -0.545 6.545 19 C -0.040 4.040 20 N -0.368 5.368 21 C -0.016 4.016 22 C 0.134 3.866 23 N -0.505 5.505 24 C 0.408 3.592 25 N -0.822 5.822 26 C 0.092 3.908 27 H 0.268 0.732 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.401 0.599 31 H 0.130 0.870 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.175 0.825 35 H 0.176 0.824 36 H 0.424 0.576 37 H 0.403 0.597 38 H 0.095 0.905 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.541 -22.918 7.060 26.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.169 5.831 10 C -0.305 4.305 11 C 0.325 3.675 12 O -0.386 6.386 13 N -0.370 5.370 14 C 0.003 3.997 15 C -0.027 4.027 16 N -0.358 5.358 17 C 0.403 3.597 18 O -0.424 6.424 19 C -0.188 4.188 20 N -0.085 5.085 21 C -0.182 4.182 22 C -0.031 4.031 23 N -0.228 5.228 24 C 0.165 3.835 25 N -0.371 5.371 26 C -0.032 4.032 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.235 0.765 31 H 0.147 0.853 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.192 0.808 35 H 0.193 0.807 36 H 0.265 0.735 37 H 0.233 0.767 38 H 0.113 0.887 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 10.056 -23.362 6.600 26.277 hybrid contribution 2.778 1.146 0.099 3.007 sum 12.834 -22.216 6.699 26.517 Atomic orbital electron populations 1.70015 1.05935 1.27474 1.46860 1.24986 0.95031 0.99022 0.94512 0.86169 0.79420 0.81561 0.78365 1.20263 1.20738 1.19704 1.22866 0.94914 0.91641 1.58972 0.90937 1.85368 1.04709 0.96285 1.96730 1.23536 1.06718 0.95149 1.05055 1.20339 0.86447 0.86163 0.74580 1.90705 1.15214 1.85467 1.47242 1.45606 1.10056 1.04041 1.77294 1.22163 0.99462 0.81914 0.96187 1.23512 0.94182 0.98597 0.86454 1.49330 1.09631 1.66220 1.10656 1.16985 0.81036 0.76152 0.85548 1.90586 1.41530 1.51169 1.59086 1.21272 0.93908 1.09111 0.94516 1.68227 1.28663 1.06935 1.04654 1.23538 0.98938 1.03901 0.91792 1.23881 0.88816 0.89504 1.00923 1.68247 1.33179 1.19454 1.01927 1.19050 0.88139 0.87811 0.88490 1.42705 1.07327 1.68941 1.18165 1.23771 0.81601 0.98213 0.99620 0.92167 0.89169 0.89121 0.76509 0.85263 0.89529 0.88004 0.80762 0.80712 0.73524 0.76691 0.88655 0.88186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.92 13.22 55.49 0.73 -25.19 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -15.13 9.50 30.94 0.29 -14.83 16 8 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 9 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 10 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 11 C 0.54 9.47 7.85 -10.99 -0.09 9.38 16 12 O -0.51 -10.81 15.46 5.56 0.09 -10.72 16 13 N -0.72 -9.12 5.40 -53.49 -0.29 -9.41 16 14 C 0.11 1.13 4.61 -67.68 -0.31 0.81 16 15 C 0.10 0.81 8.38 -8.50 -0.07 0.74 16 16 N -0.63 -6.43 3.69 -186.23 -0.69 -7.11 16 17 C 0.61 7.32 8.03 -12.38 -0.10 7.22 16 18 O -0.55 -7.19 14.59 5.30 0.08 -7.12 16 19 C -0.04 -0.45 6.77 -82.65 -0.56 -1.01 16 20 N -0.37 -3.81 8.16 -9.49 -0.08 -3.89 16 21 C -0.02 -0.12 11.21 -17.39 -0.19 -0.32 16 22 C 0.13 0.94 11.22 -17.26 -0.19 0.75 16 23 N -0.51 -4.85 10.52 -11.99 -0.13 -4.98 16 24 C 0.41 4.29 7.77 -154.87 -1.20 3.08 16 25 N -0.82 -7.24 8.54 31.32 0.27 -6.98 16 26 C 0.09 0.87 7.41 -8.37 -0.06 0.81 16 27 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 29 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 30 H 0.40 4.56 8.76 -40.82 -0.36 4.20 16 31 H 0.13 1.36 7.46 -51.93 -0.39 0.97 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.18 0.82 8.06 -52.49 -0.42 0.39 16 35 H 0.18 0.55 8.06 -52.48 -0.42 0.13 16 36 H 0.42 3.95 6.07 -40.82 -0.25 3.70 16 37 H 0.40 2.73 8.95 -40.82 -0.37 2.37 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 1.10 7.05 -51.93 -0.37 0.74 16 LS Contribution 356.65 15.07 5.37 5.37 Total: -1.00 -36.39 356.65 -8.47 -44.85 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -4.23 Total: 6.80 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -2.36 Total: 5.82 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: -0.18 Total: -57.55 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: 0.16 Total: -17.84 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.39 -8.47 -44.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356743593.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.553 kcal (2) G-P(sol) polarization free energy of solvation -36.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds