Wall clock time and date at job start Tue Mar 31 2020 19:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86806 * 119.99626 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99596 * 3 2 1 5 5 H 1.48495 * 109.47251 * 30.00209 * 3 2 1 6 6 H 1.48502 * 109.46845 * 150.00216 * 3 2 1 7 7 C 1.38794 * 120.00324 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00321 * 180.02562 * 7 2 1 9 9 S 1.76208 * 119.99748 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99847 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47130 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00099 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00357 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00276 * 180.02562 * 13 11 10 15 15 C 1.53499 * 114.20413 * 154.99378 * 14 13 11 16 16 N 1.47066 * 87.98199 * 87.52380 * 15 14 13 17 17 C 1.34778 * 136.05656 * 207.08735 * 16 15 14 18 18 O 1.21570 * 120.00203 * 359.97438 * 17 16 15 19 19 C 1.47733 * 120.00026 * 179.97438 * 17 16 15 20 20 N 1.33015 * 120.16502 * 354.58052 * 19 17 16 21 21 C 1.31728 * 120.01466 * 180.25480 * 20 19 17 22 22 C 1.38802 * 120.33618 * 359.75907 * 21 20 19 23 23 N 1.32026 * 120.33105 * 359.97438 * 22 21 20 24 24 C 1.32828 * 119.98147 * 359.97438 * 23 22 21 25 25 N 1.38274 * 120.16781 * 180.02562 * 24 23 22 26 26 C 1.47069 * 87.88645 * 27.33826 * 16 15 14 27 27 H 0.97006 * 119.99910 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47349 * 59.99884 * 10 9 7 29 29 H 1.09001 * 109.47135 * 300.00302 * 10 9 7 30 30 H 0.97003 * 119.99310 * 359.97438 * 13 11 10 31 31 H 1.09000 * 113.41489 * 21.79761 * 14 13 11 32 32 H 1.08990 * 113.47412 * 332.74291 * 15 14 13 33 33 H 1.09000 * 113.46355 * 202.29664 * 15 14 13 34 34 H 1.07994 * 119.83458 * 179.72757 * 21 20 19 35 35 H 1.08007 * 119.83196 * 179.97438 * 22 21 20 36 36 H 0.97003 * 119.99619 * 156.37529 * 25 24 23 37 37 H 0.96995 * 119.99933 * 336.37029 * 25 24 23 38 38 H 1.09000 * 113.46390 * 87.44290 * 26 16 15 39 39 H 1.09005 * 113.46800 * 217.87604 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8442 -6.3431 -0.0008 14 6 2.3305 -7.7150 -0.0019 15 6 3.2987 -8.7490 -0.5932 16 7 3.8884 -8.8865 0.7470 17 6 5.0917 -9.2304 1.2472 18 8 6.0014 -9.5229 0.4956 19 6 5.3054 -9.2518 2.7088 20 7 4.3483 -8.8298 3.5305 21 6 4.5438 -8.8455 4.8331 22 6 5.7443 -9.3058 5.3563 23 7 6.7014 -9.7328 4.5533 24 6 6.5176 -9.7236 3.2379 25 7 7.5172 -10.1703 2.3934 26 6 2.5853 -8.4896 1.3015 27 1 -0.4850 0.8401 0.0004 28 1 3.1246 -3.7313 0.8894 29 1 3.1246 -3.7312 -0.8905 30 1 3.8010 -6.1834 -0.0004 31 1 1.3093 -7.7948 -0.3745 32 1 3.9854 -8.3300 -1.3287 33 1 2.8047 -9.6547 -0.9450 34 1 3.7665 -8.4980 5.4973 35 1 5.8961 -9.3148 6.4256 36 1 7.2949 -10.4880 1.5042 37 1 8.4407 -10.1660 2.6902 38 1 1.9033 -9.3270 1.4492 39 1 2.6642 -7.8495 2.1803 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356743593.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:35 Heat of formation + Delta-G solvation = 6.415001 kcal Electronic energy + Delta-G solvation = -25569.381984 eV Core-core repulsion = 21639.274380 eV Total energy + Delta-G solvation = -3930.107604 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.37844 -41.50816 -40.14760 -38.92143 -36.45694 -34.82436 -34.65422 -34.56473 -31.67994 -30.79418 -29.43033 -27.65691 -27.11757 -26.32420 -24.58358 -23.27497 -21.90458 -20.61285 -19.84470 -19.38680 -18.57584 -18.45735 -17.97436 -17.62357 -17.23810 -16.87337 -16.78831 -16.54646 -16.27907 -15.90069 -15.83077 -15.48569 -14.78906 -14.75389 -14.61542 -14.21719 -14.17893 -13.93668 -13.39922 -13.16096 -13.08213 -12.89223 -12.75733 -12.65847 -12.61120 -12.01699 -11.73461 -11.63260 -11.36098 -11.13961 -11.02018 -10.28655 -10.27365 -10.05650 -9.91908 -9.13829 -8.64891 -8.34409 -6.11620 -0.52839 0.20337 1.26115 1.42333 1.46124 1.54231 1.56124 1.57036 1.66493 2.18286 2.27946 2.39922 2.76078 2.95753 2.99728 3.29287 3.31794 3.36539 3.50813 3.77314 3.91842 4.02825 4.17240 4.28728 4.31443 4.41207 4.45902 4.50802 4.62009 4.63111 4.80957 4.89858 5.29187 5.42410 5.47355 5.91721 6.20188 6.24150 6.36865 6.41519 6.52910 6.94520 6.96137 7.07294 7.18254 8.74625 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.014942 B = 0.002389 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.466308 B =11716.437133 C =12484.270166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.015 3.985 3 Si 0.996 3.004 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.548 4.548 8 H 0.080 0.920 9 S -0.140 6.140 10 C -0.133 4.133 11 C 0.545 3.455 12 O -0.552 6.552 13 N -0.696 5.696 14 C 0.103 3.897 15 C 0.105 3.895 16 N -0.628 5.628 17 C 0.606 3.394 18 O -0.568 6.568 19 C -0.070 4.070 20 N -0.385 5.385 21 C -0.016 4.016 22 C 0.145 3.855 23 N -0.520 5.520 24 C 0.394 3.606 25 N -0.818 5.818 26 C 0.101 3.899 27 H 0.272 0.728 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.410 0.590 31 H 0.130 0.870 32 H 0.086 0.914 33 H 0.132 0.868 34 H 0.205 0.795 35 H 0.217 0.783 36 H 0.422 0.578 37 H 0.410 0.590 38 H 0.120 0.880 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.009 -23.441 8.108 28.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.818 3.182 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.696 4.696 8 H 0.098 0.902 9 S 0.087 5.913 10 C -0.284 4.284 11 C 0.331 3.669 12 O -0.429 6.429 13 N -0.348 5.348 14 C -0.004 4.004 15 C -0.017 4.017 16 N -0.361 5.361 17 C 0.396 3.604 18 O -0.448 6.448 19 C -0.216 4.216 20 N -0.102 5.102 21 C -0.183 4.183 22 C -0.021 4.021 23 N -0.244 5.244 24 C 0.153 3.847 25 N -0.368 5.368 26 C -0.023 4.023 27 H 0.081 0.919 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.245 0.755 31 H 0.148 0.852 32 H 0.104 0.896 33 H 0.150 0.850 34 H 0.222 0.778 35 H 0.234 0.766 36 H 0.261 0.739 37 H 0.242 0.758 38 H 0.138 0.862 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.572 -23.930 7.618 27.651 hybrid contribution 2.354 1.183 -0.109 2.637 sum 13.926 -22.747 7.509 27.708 Atomic orbital electron populations 1.70169 1.07846 1.28619 1.47942 1.26081 0.95962 1.03174 0.93764 0.84987 0.78188 0.76243 0.78772 1.19359 1.20176 1.18432 1.23199 0.95279 0.92238 1.58904 0.90216 1.85473 1.09956 0.98813 1.97022 1.23380 1.03796 0.94723 1.06519 1.19910 0.86163 0.86232 0.74620 1.90696 1.16806 1.85829 1.49594 1.45349 1.09889 1.04275 1.75301 1.22343 0.99949 0.80530 0.97572 1.23604 0.93426 0.98950 0.85752 1.49390 1.09481 1.65765 1.11435 1.17196 0.81129 0.76049 0.85984 1.90561 1.42175 1.52379 1.59717 1.21195 0.94802 1.11243 0.94359 1.68199 1.28837 1.07379 1.05796 1.24149 0.99947 1.02890 0.91291 1.24604 0.87819 0.87163 1.02510 1.68339 1.34161 1.20183 1.01680 1.19215 0.88340 0.88093 0.89100 1.42670 1.07601 1.68571 1.17927 1.23763 0.81650 0.98553 0.98290 0.91943 0.87739 0.87456 0.75454 0.85190 0.89606 0.85030 0.77816 0.76631 0.73872 0.75829 0.86243 0.89588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.28 13.22 21.65 0.29 -54.99 16 2 C 0.02 0.86 5.49 84.86 0.47 1.33 16 3 Si 1.00 43.44 29.55 68.60 2.03 45.47 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 6 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.55 -31.13 9.50 67.95 0.65 -30.49 16 8 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 9 S -0.14 -7.61 20.57 -56.49 -1.16 -8.77 16 10 C -0.13 -5.18 6.16 71.24 0.44 -4.74 16 11 C 0.54 18.92 7.85 87.66 0.69 19.61 16 12 O -0.55 -23.50 15.46 -3.03 -0.05 -23.55 16 13 N -0.70 -16.86 5.40 -441.55 -2.38 -19.24 16 14 C 0.10 1.94 4.61 45.55 0.21 2.15 16 15 C 0.10 1.57 8.38 83.18 0.70 2.27 16 16 N -0.63 -12.06 3.69 -861.38 -3.18 -15.24 16 17 C 0.61 14.14 8.03 86.75 0.70 14.83 16 18 O -0.57 -14.89 14.59 -3.94 -0.06 -14.95 16 19 C -0.07 -1.54 6.77 42.01 0.28 -1.25 16 20 N -0.39 -7.47 8.16 -183.94 -1.50 -8.97 16 21 C -0.02 -0.21 11.21 84.84 0.95 0.75 16 22 C 0.14 1.65 11.22 84.80 0.95 2.60 16 23 N -0.52 -9.19 10.52 -191.86 -2.02 -11.20 16 24 C 0.39 8.05 7.77 133.50 1.04 9.09 16 25 N -0.82 -14.33 8.54 -54.83 -0.47 -14.80 16 26 C 0.10 1.75 7.41 83.27 0.62 2.37 16 27 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 28 H 0.10 3.76 8.14 -2.40 -0.02 3.74 16 29 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 30 H 0.41 8.69 8.76 -92.71 -0.81 7.88 16 31 H 0.13 2.56 7.46 -2.39 -0.02 2.54 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.21 1.24 8.06 -2.91 -0.02 1.21 16 35 H 0.22 0.48 8.06 -2.91 -0.02 0.46 16 36 H 0.42 7.94 6.07 -92.71 -0.56 7.38 16 37 H 0.41 5.49 8.95 -92.71 -0.83 4.66 16 38 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.09 1.79 7.05 -2.38 -0.02 1.78 16 Total: -1.00 -81.19 356.65 -1.87 -83.06 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: -1.06 Total: 24.68 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 7.68 Total: 18.51 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -9.26 Total: -124.44 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -0.10 Total: -38.50 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -7.61 SS G_CDS: -1.16 Total: -8.77 kcal Total: -81.19 -1.87 -83.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356743593.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.475 kcal (2) G-P(sol) polarization free energy of solvation -81.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds