Wall clock time and date at job start Tue Mar 31 2020 19:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86797 * 120.00122 * 2 1 4 4 H 1.48502 * 109.47180 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47284 * 300.00128 * 3 2 1 6 6 H 1.48496 * 109.47452 * 60.00243 * 3 2 1 7 7 C 1.38797 * 119.99735 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00101 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00063 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00177 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47215 * 179.97438 * 10 9 7 12 12 O 1.21275 * 119.99963 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99702 * 180.02562 * 11 10 9 14 14 C 1.47360 * 126.79129 * 0.29142 * 13 11 10 15 15 C 1.56016 * 105.14439 * 182.05720 * 14 13 11 16 16 H 1.09007 * 116.89463 * 159.04291 * 15 14 13 17 17 C 1.57432 * 99.69623 * 32.50002 * 15 14 13 18 18 C 1.49293 * 126.94033 * 180.02562 * 13 11 10 19 19 H 1.08999 * 116.78783 * 16.29444 * 18 13 11 20 20 C 1.56019 * 104.09071 * 246.68206 * 18 13 11 21 21 N 1.47867 * 105.10056 * 288.76936 * 20 18 13 22 22 C 1.34777 * 126.94311 * 181.98494 * 21 20 18 23 23 O 1.21619 * 120.00500 * 180.02562 * 22 21 20 24 24 C 1.47236 * 120.00001 * 0.02562 * 22 21 20 25 25 C 1.37007 * 127.18918 * 179.68842 * 24 22 21 26 26 N 1.33326 * 106.37014 * 179.84636 * 25 24 22 27 27 N 1.28513 * 109.43899 * 0.43180 * 26 25 24 28 28 N 1.28715 * 110.63773 * 359.72281 * 27 26 25 29 29 H 0.97002 * 126.03616 * 179.97438 * 28 27 26 30 30 H 0.96997 * 119.99454 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.46747 * 60.00086 * 10 9 7 32 32 H 1.08997 * 109.47435 * 300.00357 * 10 9 7 33 33 H 1.09001 * 110.42910 * 63.06785 * 14 13 11 34 34 H 1.08998 * 110.15516 * 300.90464 * 14 13 11 35 35 H 1.08995 * 112.54128 * 191.97752 * 17 15 14 36 36 H 1.09007 * 112.31765 * 64.44047 * 17 15 14 37 37 H 1.08997 * 110.31478 * 169.86633 * 20 18 13 38 38 H 1.08995 * 110.31868 * 47.67624 * 20 18 13 39 39 H 1.07996 * 126.81451 * 359.96059 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7279 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9872 -5.3027 0.0001 12 8 0.7909 -5.5022 0.0000 13 7 2.8440 -6.3432 0.0007 14 6 4.3160 -6.2743 0.0069 15 6 4.7937 -7.7584 -0.0493 16 1 5.8098 -7.9364 -0.4017 17 6 3.6310 -8.3789 -0.9104 18 6 2.4932 -7.7943 0.0009 19 1 1.4702 -8.0525 -0.2726 20 6 2.9855 -8.3040 1.3909 21 7 4.4616 -8.2989 1.3023 22 6 5.3314 -8.6964 2.2520 23 8 6.5282 -8.6372 2.0437 24 6 4.8328 -9.2024 3.5416 25 6 5.5790 -9.6477 4.6009 26 7 4.7114 -10.0030 5.5488 27 7 3.5133 -9.8099 5.1261 28 7 3.5253 -9.3319 3.9310 29 1 2.7465 -9.1041 3.3996 30 1 -0.4849 0.8401 0.0004 31 1 3.1243 -3.7314 0.8895 32 1 3.1244 -3.7315 -0.8904 33 1 4.6707 -5.7968 0.9203 34 1 4.6701 -5.7294 -0.8682 35 1 3.6453 -9.4687 -0.9084 36 1 3.6023 -7.9723 -1.9214 37 1 2.6209 -9.3147 1.5742 38 1 2.6515 -7.6312 2.1807 39 1 6.6563 -9.6988 4.6575 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356838351.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:04 Heat of formation + Delta-G solvation = 76.857268 kcal Electronic energy + Delta-G solvation = -26346.805773 eV Core-core repulsion = 22419.752775 eV Total energy + Delta-G solvation = -3927.052998 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.82150 -41.65094 -39.30149 -38.10383 -34.76791 -33.65711 -32.50888 -32.02718 -31.12820 -30.36730 -28.77292 -26.51932 -25.57927 -24.84614 -23.55564 -22.50999 -21.95936 -20.89746 -19.71621 -18.45234 -17.83231 -17.36698 -17.29057 -16.89651 -16.55519 -16.04296 -15.60010 -15.04267 -14.87455 -14.79476 -14.40634 -14.13510 -13.88719 -13.48825 -13.48107 -13.04995 -12.70173 -12.62259 -12.45354 -12.34293 -12.08840 -11.97153 -11.84859 -11.67231 -11.20820 -11.12830 -11.10355 -10.82793 -10.75963 -10.01505 -9.89931 -9.72466 -9.34757 -9.15045 -8.84626 -8.35287 -6.60874 -6.29944 -4.01682 0.40654 1.84276 1.86096 2.15248 2.50035 2.56128 2.77656 3.16498 3.17626 3.25493 3.41988 3.53272 3.77325 3.83681 3.96486 4.11251 4.12419 4.29960 4.45057 4.48279 4.64958 4.72666 4.79939 4.87864 5.03144 5.05920 5.20552 5.23247 5.30705 5.37483 5.47938 5.49137 5.56164 5.74794 5.94306 6.01314 6.08640 6.69038 7.33845 7.36209 7.52338 7.81424 8.27014 8.28052 9.15900 10.77530 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.015672 B = 0.002646 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.157729 B =10579.967157 C =10988.167784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.148 4.148 11 C 0.554 3.446 12 O -0.510 6.510 13 N -0.630 5.630 14 C 0.092 3.908 15 C 0.128 3.872 16 H 0.145 0.855 17 C -0.147 4.147 18 C 0.133 3.867 19 H 0.145 0.855 20 C 0.066 3.934 21 N -0.618 5.618 22 C 0.617 3.383 23 O -0.511 6.511 24 C -0.066 4.066 25 C 0.036 3.964 26 N -0.269 5.269 27 N -0.044 5.044 28 N -0.376 5.376 29 H 0.450 0.550 30 H 0.269 0.731 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.291 -21.072 0.327 23.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.167 5.833 10 C -0.299 4.299 11 C 0.343 3.657 12 O -0.383 6.383 13 N -0.368 5.368 14 C -0.032 4.032 15 C 0.026 3.974 16 H 0.163 0.837 17 C -0.186 4.186 18 C 0.028 3.972 19 H 0.162 0.838 20 C -0.058 4.058 21 N -0.354 5.354 22 C 0.404 3.596 23 O -0.384 6.384 24 C -0.200 4.200 25 C -0.124 4.124 26 N -0.134 5.134 27 N -0.026 5.026 28 N -0.107 5.107 29 H 0.301 0.699 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 8.225 -21.611 1.545 23.175 hybrid contribution 2.047 1.872 -1.069 2.973 sum 10.272 -19.738 0.476 22.256 Atomic orbital electron populations 1.70021 1.05962 1.27471 1.46756 1.24999 0.95049 0.99094 0.94407 0.86103 0.79592 0.81762 0.77976 1.19580 1.20496 1.20507 1.22878 0.94908 0.91465 1.59133 0.90849 1.85391 1.04663 0.96484 1.96743 1.23524 1.06709 0.94710 1.04925 1.20109 0.85596 0.85350 0.74602 1.90725 1.14726 1.84969 1.47866 1.49238 1.06466 1.04979 1.76153 1.22763 0.80714 0.96409 1.03364 1.24145 1.00717 0.91913 0.80648 0.83730 1.24316 0.93485 1.01455 0.99334 1.23745 1.00560 0.81009 0.91848 0.83758 1.23250 0.80175 1.01256 1.01093 1.49175 1.06520 1.63735 1.15952 1.16315 0.85263 0.77391 0.80671 1.90892 1.13828 1.54888 1.78808 1.22290 0.84789 1.13319 0.99646 1.23949 1.01923 0.98449 0.88065 1.75034 0.94791 1.18332 1.25260 1.78258 1.17930 1.12312 0.94134 1.46171 1.08725 1.42592 1.13219 0.69897 0.92152 0.89339 0.89103 0.90397 0.89457 0.88627 0.87905 0.90142 0.89986 0.77746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.55 13.22 55.49 0.73 -24.82 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 20.98 29.55 -169.99 -5.02 15.96 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.54 -14.82 9.50 30.94 0.29 -14.53 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.54 20.57 -107.50 -2.21 -3.76 16 10 C -0.15 -2.80 5.43 36.00 0.20 -2.61 16 11 C 0.55 9.25 7.91 -10.98 -0.09 9.16 16 12 O -0.51 -10.35 16.23 5.56 0.09 -10.26 16 13 N -0.63 -7.05 2.93 -157.20 -0.46 -7.51 16 14 C 0.09 0.80 5.97 -1.96 -0.01 0.79 16 15 C 0.13 0.84 5.25 -62.34 -0.33 0.51 16 16 H 0.15 0.82 8.06 -51.93 -0.42 0.40 16 17 C -0.15 -0.77 6.83 -22.12 -0.15 -0.92 16 18 C 0.13 1.00 5.23 -62.57 -0.33 0.68 16 19 H 0.14 1.07 8.08 -51.93 -0.42 0.65 16 20 C 0.07 0.42 4.55 -1.68 -0.01 0.41 16 21 N -0.62 -4.60 2.95 -157.87 -0.47 -5.07 16 22 C 0.62 5.78 7.88 -12.60 -0.10 5.68 16 23 O -0.51 -6.12 17.27 5.26 0.09 -6.03 16 24 C -0.07 -0.59 7.00 -82.33 -0.58 -1.17 16 25 C 0.04 0.34 11.87 -17.35 -0.21 0.13 16 26 N -0.27 -3.02 12.35 30.47 0.38 -2.65 16 27 N -0.04 -0.47 13.35 60.35 0.81 0.34 16 28 N -0.38 -3.04 6.69 33.31 0.22 -2.81 16 29 H 0.45 2.48 5.29 -190.33 -1.01 1.47 16 30 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 32 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.29 7.19 -51.93 -0.37 -0.09 16 38 H 0.08 0.60 7.45 -51.93 -0.39 0.21 16 39 H 0.21 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 348.43 15.07 5.25 5.25 Total: -1.00 -36.37 348.43 -7.10 -43.47 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -5.11 Total: -2.21 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -1.40 Total: 0.09 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 1.21 Total: -42.52 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: 0.18 Total: -16.29 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.37 -7.10 -43.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356838351.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.332 kcal (2) G-P(sol) polarization free energy of solvation -36.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds