Wall clock time and date at job start Tue Mar 31 2020 19:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39120 * 126.51713 * 219.95551 * 3 2 1 5 5 N 1.38655 * 126.36128 * 0.02562 * 4 3 2 6 6 C 1.34774 * 119.99766 * 180.02562 * 5 4 3 7 7 O 1.21279 * 120.00472 * 359.97438 * 6 5 4 8 8 C 1.50706 * 120.00020 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.47200 * 179.97438 * 8 6 5 10 10 C 1.76198 * 99.99878 * 179.97438 * 9 8 6 11 11 H 1.08006 * 120.00031 * 359.97438 * 10 9 8 12 12 C 1.38801 * 120.00096 * 180.02562 * 10 9 8 13 13 N 1.31631 * 119.99737 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99933 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47409 * 89.99815 * 14 12 10 16 16 H 1.48504 * 109.46732 * 209.99538 * 14 12 10 17 17 H 1.48503 * 109.47095 * 329.99265 * 14 12 10 18 18 N 1.34810 * 107.27352 * 180.28042 * 4 3 2 19 19 H 0.97003 * 125.68586 * 179.73700 * 18 4 3 20 20 N 1.39889 * 108.62459 * 359.58516 * 18 4 3 21 21 C 1.30876 * 109.12111 * 0.42626 * 20 18 4 22 22 N 1.39580 * 125.99214 * 179.72539 * 21 20 18 23 23 C 1.47015 * 110.99779 * 123.66086 * 22 21 20 24 24 C 1.53099 * 109.25484 * 177.60588 * 23 22 21 25 25 O 1.43012 * 109.25801 * 56.85061 * 24 23 22 26 26 C 1.43015 * 113.73838 * 301.32258 * 25 24 23 27 27 C 1.47009 * 110.99942 * 0.02562 * 22 21 20 28 28 H 0.96994 * 120.00477 * 359.97438 * 5 4 3 29 29 H 1.09001 * 109.46953 * 299.99667 * 8 6 5 30 30 H 1.09000 * 109.47318 * 59.99264 * 8 6 5 31 31 H 0.97001 * 119.99701 * 180.02562 * 13 12 10 32 32 H 1.08993 * 109.50752 * 297.54216 * 23 22 21 33 33 H 1.09005 * 109.50975 * 57.67232 * 23 22 21 34 34 H 1.09002 * 109.50869 * 296.91584 * 24 23 22 35 35 H 1.09004 * 109.54016 * 176.80677 * 24 23 22 36 36 H 1.08997 * 109.51231 * 298.74004 * 26 25 24 37 37 H 1.09000 * 109.54249 * 178.62320 * 26 25 24 38 38 H 1.08996 * 109.51104 * 302.32920 * 27 22 21 39 39 H 1.09000 * 109.50766 * 62.46184 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3955 0.8581 0.7180 5 7 2.9868 1.8733 1.5694 6 6 3.9036 2.6311 2.2031 7 8 5.0860 2.4248 2.0292 8 6 3.4595 3.7342 3.1290 9 16 4.9124 4.5622 3.8216 10 6 4.1231 5.7692 4.8339 11 1 3.0449 5.8179 4.8752 12 6 4.8869 6.6581 5.5775 13 7 6.2009 6.5991 5.5268 14 14 4.0501 7.9372 6.6513 15 1 3.8304 7.3768 8.0088 16 1 4.9115 9.1431 6.7471 17 1 2.7434 8.3087 6.0515 18 7 4.6684 0.5221 0.4279 19 1 5.4621 0.9530 0.7819 20 7 4.6538 -0.5537 -0.4662 21 6 3.4128 -0.8729 -0.7327 22 7 2.9938 -1.8932 -1.5881 23 6 2.1108 -2.8377 -0.8885 24 6 1.6282 -3.9036 -1.8758 25 8 2.7607 -4.5526 -2.4602 26 6 3.6418 -3.6622 -3.1503 27 6 4.1448 -2.5938 -2.1759 28 1 2.0412 2.0386 1.7083 29 1 2.8602 4.4556 2.5734 30 1 2.8625 3.3119 3.9373 31 1 6.7347 7.2200 6.0468 32 1 2.6590 -3.3153 -0.0764 33 1 1.2525 -2.3017 -0.4832 34 1 1.0345 -3.4322 -2.6590 35 1 1.0188 -4.6386 -1.3498 36 1 3.1067 -3.1837 -3.9706 37 1 4.4893 -4.2218 -3.5460 38 1 4.7714 -1.8798 -2.7103 39 1 4.7256 -3.0675 -1.3844 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001357283112.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:15 Heat of formation + Delta-G solvation = 40.464699 kcal Electronic energy + Delta-G solvation = -25512.191699 eV Core-core repulsion = 21583.560600 eV Total energy + Delta-G solvation = -3928.631098 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.15291 -40.25990 -39.39484 -36.61830 -36.32113 -35.10227 -32.60643 -31.78960 -31.33428 -30.69962 -28.92649 -27.36859 -25.68954 -24.61252 -23.10390 -22.43470 -21.46643 -20.23807 -19.53926 -18.13816 -17.35445 -16.96430 -16.71357 -16.44220 -16.24304 -15.98916 -15.55713 -15.44785 -14.98281 -14.95388 -14.79239 -14.50647 -14.26118 -13.93040 -13.34585 -13.25401 -12.93135 -12.78057 -12.72923 -12.65728 -12.03569 -11.83265 -11.59418 -11.24527 -11.17169 -11.11450 -11.07685 -10.92927 -10.49062 -10.34726 -10.02723 -9.97603 -9.23313 -8.72266 -8.59591 -8.54193 -6.75226 -6.39646 -4.13652 1.06076 1.73313 1.93051 2.40632 2.48007 2.51268 3.00099 3.12307 3.18880 3.22185 3.33657 3.38533 3.46264 3.95649 4.01163 4.26936 4.43741 4.49161 4.55578 4.70887 4.81759 4.84375 4.90767 4.96772 5.03487 5.13382 5.22782 5.29401 5.36188 5.47016 5.47622 5.52346 5.67670 5.79773 6.05259 6.58808 6.66154 6.69058 7.00955 7.36149 7.43189 7.47250 7.62334 8.17509 9.06448 10.67720 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.032873 B = 0.002080 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.568537 B =13457.681901 C =14160.229307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C 0.297 3.703 3 C -0.239 4.239 4 C 0.415 3.585 5 N -0.647 5.647 6 C 0.542 3.458 7 O -0.495 6.495 8 C -0.156 4.156 9 S -0.051 6.051 10 C -0.540 4.540 11 H 0.076 0.924 12 C 0.075 3.925 13 N -0.866 5.866 14 Si 0.922 3.078 15 H -0.276 1.276 16 H -0.281 1.281 17 H -0.271 1.271 18 N -0.437 5.437 19 H 0.461 0.539 20 N -0.312 5.312 21 C 0.318 3.682 22 N -0.448 5.448 23 C 0.021 3.979 24 C 0.065 3.935 25 O -0.383 6.383 26 C 0.062 3.938 27 C 0.020 3.980 28 H 0.431 0.569 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.271 0.729 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.034 -17.956 -13.908 23.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.017 4.017 3 C -0.260 4.260 4 C 0.179 3.821 5 N -0.297 5.297 6 C 0.331 3.669 7 O -0.366 6.366 8 C -0.306 4.306 9 S 0.176 5.824 10 C -0.688 4.688 11 H 0.094 0.906 12 C -0.135 4.135 13 N -0.501 5.501 14 Si 0.747 3.253 15 H -0.201 1.201 16 H -0.206 1.206 17 H -0.196 1.196 18 N -0.157 5.157 19 H 0.317 0.683 20 N -0.141 5.141 21 C 0.057 3.943 22 N -0.170 5.170 23 C -0.106 4.106 24 C -0.012 4.012 25 O -0.301 6.301 26 C -0.015 4.015 27 C -0.107 4.107 28 H 0.271 0.729 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.124 0.876 36 H 0.081 0.919 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.615 -18.404 -14.666 24.194 hybrid contribution -1.904 1.747 1.870 3.190 sum -7.519 -16.657 -12.796 22.310 Atomic orbital electron populations 1.81304 1.11108 1.08837 1.10230 1.24212 0.90913 0.93527 0.93028 1.14835 0.85699 1.08836 1.16653 1.18050 0.86296 0.88111 0.89619 1.43384 1.12652 1.30584 1.43105 1.20991 0.85144 0.81609 0.79147 1.90533 1.16900 1.67839 1.61339 1.23584 1.08575 0.98015 1.00461 1.85436 1.02196 1.38774 1.56036 1.22826 0.95186 1.19350 1.31426 0.90566 1.25008 0.94876 0.97242 0.96337 1.69993 1.04178 1.36558 1.39341 0.86119 0.79166 0.79898 0.80074 1.20135 1.20642 1.19573 1.46533 1.06066 1.27200 1.35875 0.68291 1.77420 1.17638 1.05419 1.13659 1.20184 0.89241 0.93857 0.91062 1.59387 1.18137 1.10954 1.28553 1.22986 0.97423 0.93546 0.96673 1.22696 0.88351 0.94554 0.95602 1.88015 1.36170 1.34181 1.71769 1.22756 0.94123 0.90931 0.93688 1.22874 0.91468 0.97216 0.99182 0.72926 0.87755 0.87771 0.91941 0.92079 0.88894 0.91744 0.87618 0.91874 0.87657 0.88138 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.66 18.54 41.84 0.78 -4.88 16 2 C 0.30 3.48 13.41 -22.47 -0.30 3.18 16 3 C -0.24 -2.75 5.88 -106.24 -0.62 -3.38 16 4 C 0.41 4.92 7.76 -153.26 -1.19 3.73 16 5 N -0.65 -7.19 5.39 -11.05 -0.06 -7.25 16 6 C 0.54 7.94 7.81 -10.98 -0.09 7.86 16 7 O -0.50 -8.56 13.39 5.56 0.07 -8.49 16 8 C -0.16 -2.58 6.16 36.01 0.22 -2.36 16 9 S -0.05 -1.22 20.57 -107.50 -2.21 -3.43 16 10 C -0.54 -14.14 9.50 30.94 0.29 -13.85 16 11 H 0.08 1.88 7.80 -52.48 -0.41 1.47 16 12 C 0.08 2.01 5.49 -17.43 -0.10 1.92 16 13 N -0.87 -24.59 13.22 55.49 0.73 -23.85 16 14 Si 0.92 20.24 29.55 -169.99 -5.02 15.22 16 15 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 18 N -0.44 -5.48 6.94 31.49 0.22 -5.26 16 19 H 0.46 6.02 6.42 -182.75 -1.17 4.85 16 20 N -0.31 -3.83 11.70 31.58 0.37 -3.46 16 21 C 0.32 3.64 6.58 -154.66 -1.02 2.63 16 22 N -0.45 -4.38 4.80 -172.20 -0.83 -5.21 16 23 C 0.02 0.18 5.44 -3.71 -0.02 0.16 16 24 C 0.07 0.47 7.01 37.21 0.26 0.73 16 25 O -0.38 -3.30 10.83 -35.23 -0.38 -3.68 16 26 C 0.06 0.43 7.01 37.21 0.26 0.69 16 27 C 0.02 0.16 5.02 -3.71 -0.02 0.14 16 28 H 0.43 3.67 8.55 -40.82 -0.35 3.32 16 29 H 0.10 1.55 8.14 -51.92 -0.42 1.13 16 30 H 0.10 1.54 8.14 -51.92 -0.42 1.12 16 31 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.85 5.91 -51.93 -0.31 0.54 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.81 8.05 -51.93 -0.42 0.39 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 353.50 15.07 5.33 5.33 Total: -1.00 -31.53 353.50 -8.49 -40.02 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -5.17 Total: 3.50 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -2.32 Total: 1.45 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 1.21 Total: -49.92 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -0.31 Total: -12.17 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: -1.22 SS G_CDS: -2.21 Total: -3.43 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.53 -8.49 -40.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357283112.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.489 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds