Wall clock time and date at job start Tue Mar 31 2020 19:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39120 * 126.51713 * 219.95551 * 3 2 1 5 5 N 1.38655 * 126.36128 * 0.02562 * 4 3 2 6 6 C 1.34774 * 119.99766 * 180.02562 * 5 4 3 7 7 O 1.21279 * 120.00472 * 359.97438 * 6 5 4 8 8 C 1.50706 * 120.00020 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.47200 * 179.97438 * 8 6 5 10 10 C 1.76198 * 99.99878 * 179.97438 * 9 8 6 11 11 H 1.08006 * 120.00031 * 359.97438 * 10 9 8 12 12 C 1.38801 * 120.00096 * 180.02562 * 10 9 8 13 13 N 1.31631 * 119.99737 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99933 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47409 * 89.99815 * 14 12 10 16 16 H 1.48504 * 109.46732 * 209.99538 * 14 12 10 17 17 H 1.48503 * 109.47095 * 329.99265 * 14 12 10 18 18 N 1.34810 * 107.27352 * 180.28042 * 4 3 2 19 19 H 0.97003 * 125.68586 * 179.73700 * 18 4 3 20 20 N 1.39889 * 108.62459 * 359.58516 * 18 4 3 21 21 C 1.30876 * 109.12111 * 0.42626 * 20 18 4 22 22 N 1.39580 * 125.99214 * 179.72539 * 21 20 18 23 23 C 1.47015 * 110.99779 * 123.66086 * 22 21 20 24 24 C 1.53099 * 109.25484 * 177.60588 * 23 22 21 25 25 O 1.43012 * 109.25801 * 56.85061 * 24 23 22 26 26 C 1.43015 * 113.73838 * 301.32258 * 25 24 23 27 27 C 1.47009 * 110.99942 * 0.02562 * 22 21 20 28 28 H 0.96994 * 120.00477 * 359.97438 * 5 4 3 29 29 H 1.09001 * 109.46953 * 299.99667 * 8 6 5 30 30 H 1.09000 * 109.47318 * 59.99264 * 8 6 5 31 31 H 0.97001 * 119.99701 * 180.02562 * 13 12 10 32 32 H 1.08993 * 109.50752 * 297.54216 * 23 22 21 33 33 H 1.09005 * 109.50975 * 57.67232 * 23 22 21 34 34 H 1.09002 * 109.50869 * 296.91584 * 24 23 22 35 35 H 1.09004 * 109.54016 * 176.80677 * 24 23 22 36 36 H 1.08997 * 109.51231 * 298.74004 * 26 25 24 37 37 H 1.09000 * 109.54249 * 178.62320 * 26 25 24 38 38 H 1.08996 * 109.51104 * 302.32920 * 27 22 21 39 39 H 1.09000 * 109.50766 * 62.46184 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3955 0.8581 0.7180 5 7 2.9868 1.8733 1.5694 6 6 3.9036 2.6311 2.2031 7 8 5.0860 2.4248 2.0292 8 6 3.4595 3.7342 3.1290 9 16 4.9124 4.5622 3.8216 10 6 4.1231 5.7692 4.8339 11 1 3.0449 5.8179 4.8752 12 6 4.8869 6.6581 5.5775 13 7 6.2009 6.5991 5.5268 14 14 4.0501 7.9372 6.6513 15 1 3.8304 7.3768 8.0088 16 1 4.9115 9.1431 6.7471 17 1 2.7434 8.3087 6.0515 18 7 4.6684 0.5221 0.4279 19 1 5.4621 0.9530 0.7819 20 7 4.6538 -0.5537 -0.4662 21 6 3.4128 -0.8729 -0.7327 22 7 2.9938 -1.8932 -1.5881 23 6 2.1108 -2.8377 -0.8885 24 6 1.6282 -3.9036 -1.8758 25 8 2.7607 -4.5526 -2.4602 26 6 3.6418 -3.6622 -3.1503 27 6 4.1448 -2.5938 -2.1759 28 1 2.0412 2.0386 1.7083 29 1 2.8602 4.4556 2.5734 30 1 2.8625 3.3119 3.9373 31 1 6.7347 7.2200 6.0468 32 1 2.6590 -3.3153 -0.0764 33 1 1.2525 -2.3017 -0.4832 34 1 1.0345 -3.4322 -2.6590 35 1 1.0188 -4.6386 -1.3498 36 1 3.1067 -3.1837 -3.9706 37 1 4.4893 -4.2218 -3.5460 38 1 4.7714 -1.8798 -2.7103 39 1 4.7256 -3.0675 -1.3844 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357283112.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:15 Heat of formation + Delta-G solvation = 18.205812 kcal Electronic energy + Delta-G solvation = -25513.156916 eV Core-core repulsion = 21583.560600 eV Total energy + Delta-G solvation = -3929.596316 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.12190 -41.21949 -40.25367 -37.59104 -37.14992 -36.11862 -34.60020 -32.45870 -32.26858 -31.79198 -30.03666 -28.09060 -27.68561 -25.31844 -24.06864 -23.36985 -22.33734 -21.07795 -20.55352 -19.86388 -18.43905 -17.97487 -17.61486 -17.36712 -17.11643 -16.89023 -16.88513 -16.43599 -16.16628 -16.10268 -15.70536 -15.53506 -15.30097 -15.11563 -14.55436 -14.33273 -14.22561 -13.91215 -13.81301 -13.38609 -13.19619 -12.91519 -12.72428 -12.65801 -12.61685 -12.41971 -11.97611 -11.79110 -11.71979 -11.60705 -11.31231 -11.15681 -10.65461 -10.34963 -9.59153 -9.55623 -8.69202 -8.37472 -6.14720 0.03503 0.81701 0.86041 1.27615 1.28618 1.42162 1.44318 1.54244 1.55288 1.78622 2.23417 2.34978 2.45839 2.88990 2.98367 3.02160 3.15665 3.46809 3.59814 3.78080 3.83261 3.92133 4.07156 4.18019 4.18890 4.19311 4.27733 4.41991 4.49254 4.63888 4.68445 4.76016 4.93911 4.96117 5.30394 5.42383 5.74186 5.74371 6.03458 6.11747 6.18376 6.39065 6.51528 6.53018 7.05845 8.71145 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.032873 B = 0.002080 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.568537 B =13457.681901 C =14160.229307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.312 3.688 3 C -0.233 4.233 4 C 0.412 3.588 5 N -0.626 5.626 6 C 0.551 3.449 7 O -0.525 6.525 8 C -0.134 4.134 9 S -0.133 6.133 10 C -0.547 4.547 11 H 0.087 0.913 12 C 0.016 3.984 13 N -0.909 5.909 14 Si 0.993 3.007 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.258 1.258 18 N -0.443 5.443 19 H 0.459 0.541 20 N -0.322 5.322 21 C 0.318 3.682 22 N -0.452 5.452 23 C 0.022 3.978 24 C 0.067 3.933 25 O -0.397 6.397 26 C 0.064 3.936 27 C 0.021 3.979 28 H 0.446 0.554 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.271 0.729 32 H 0.058 0.942 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.124 0.876 36 H 0.069 0.931 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.082 -18.574 -14.428 25.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.001 4.001 3 C -0.254 4.254 4 C 0.176 3.824 5 N -0.277 5.277 6 C 0.340 3.660 7 O -0.398 6.398 8 C -0.285 4.285 9 S 0.094 5.906 10 C -0.694 4.694 11 H 0.105 0.895 12 C -0.189 4.189 13 N -0.546 5.546 14 Si 0.816 3.184 15 H -0.195 1.195 16 H -0.206 1.206 17 H -0.182 1.182 18 N -0.162 5.162 19 H 0.314 0.686 20 N -0.151 5.151 21 C 0.057 3.943 22 N -0.174 5.174 23 C -0.105 4.105 24 C -0.010 4.010 25 O -0.316 6.316 26 C -0.013 4.013 27 C -0.106 4.106 28 H 0.288 0.712 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.142 0.858 36 H 0.088 0.912 37 H 0.143 0.857 38 H 0.120 0.880 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.713 -19.050 -15.207 25.567 hybrid contribution -1.313 1.807 1.913 2.941 sum -9.026 -17.243 -13.294 23.570 Atomic orbital electron populations 1.81328 1.11539 1.09460 1.10832 1.24070 0.90643 0.92949 0.92468 1.14778 0.85519 1.08650 1.16479 1.18054 0.86229 0.88251 0.89817 1.42975 1.12810 1.29699 1.42193 1.20568 0.84973 0.81481 0.79020 1.90545 1.18243 1.68629 1.62333 1.23394 1.05042 0.98523 1.01502 1.85536 1.08044 1.40013 1.56985 1.23210 0.95737 1.19360 1.31136 0.89496 1.26044 0.95444 0.99570 0.97861 1.70149 1.05890 1.37794 1.40719 0.85016 0.78356 0.76887 0.78161 1.19488 1.20634 1.18190 1.46546 1.06226 1.27363 1.36033 0.68641 1.77438 1.18174 1.05532 1.13995 1.20426 0.88924 0.94166 0.90832 1.59481 1.18716 1.11147 1.28058 1.23023 0.96899 0.93523 0.97026 1.22796 0.88177 0.94579 0.95492 1.88002 1.36651 1.34958 1.71967 1.22874 0.94658 0.90598 0.93163 1.22928 0.91025 0.97472 0.99192 0.71169 0.85496 0.85448 0.91991 0.92333 0.89375 0.91364 0.85807 0.91238 0.85695 0.88048 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.95 18.54 19.00 0.35 -10.60 16 2 C 0.31 6.77 13.41 88.33 1.18 7.95 16 3 C -0.23 -5.02 5.88 -20.91 -0.12 -5.14 16 4 C 0.41 9.23 7.76 132.44 1.03 10.26 16 5 N -0.63 -12.76 5.39 -307.27 -1.66 -14.41 16 6 C 0.55 15.47 7.81 87.66 0.68 16.15 16 7 O -0.52 -18.11 13.39 -3.02 -0.04 -18.15 16 8 C -0.13 -4.20 6.16 71.24 0.44 -3.77 16 9 S -0.13 -6.45 20.57 -56.49 -1.16 -7.61 16 10 C -0.55 -28.48 9.50 67.95 0.65 -27.83 16 11 H 0.09 4.16 7.80 -2.91 -0.02 4.14 16 12 C 0.02 0.86 5.49 84.86 0.47 1.32 16 13 N -0.91 -52.64 13.22 21.65 0.29 -52.36 16 14 Si 0.99 41.17 29.55 68.60 2.03 43.20 16 15 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 16 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 17 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 18 N -0.44 -10.88 6.94 -54.29 -0.38 -11.26 16 19 H 0.46 12.02 6.42 -213.45 -1.37 10.65 16 20 N -0.32 -7.68 11.70 -54.01 -0.63 -8.31 16 21 C 0.32 6.93 6.58 134.00 0.88 7.82 16 22 N -0.45 -8.26 4.80 -698.73 -3.36 -11.62 16 23 C 0.02 0.35 5.44 86.31 0.47 0.82 16 24 C 0.07 0.85 7.01 72.02 0.50 1.35 16 25 O -0.40 -6.12 10.83 -148.98 -1.61 -7.73 16 26 C 0.06 0.76 7.01 72.02 0.50 1.26 16 27 C 0.02 0.31 5.02 86.32 0.43 0.75 16 28 H 0.45 6.42 8.55 -92.71 -0.79 5.63 16 29 H 0.13 3.46 8.14 -2.39 -0.02 3.44 16 30 H 0.13 3.45 8.14 -2.40 -0.02 3.43 16 31 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.09 1.48 5.91 -2.38 -0.01 1.46 16 34 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.10 1.53 8.05 -2.39 -0.02 1.51 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -68.43 353.50 -0.07 -68.51 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -1.02 Total: 19.38 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 7.12 Total: 10.95 kcal Atomic # 7 Polarization: -103.17 SS G_CDS: -5.38 Total: -108.55 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -1.65 Total: -25.88 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Atomic # 16 Polarization: -6.45 SS G_CDS: -1.16 Total: -7.61 kcal Total: -68.43 -0.07 -68.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357283112.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.714 kcal (2) G-P(sol) polarization free energy of solvation -68.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds