Wall clock time and date at job start Tue Mar 31 2020 20:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34235 * 117.00052 * 2 1 4 4 O 1.20826 * 119.99815 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00094 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47536 * 179.97438 * 5 3 2 7 7 C 1.36486 * 119.99585 * 270.00120 * 6 5 3 8 8 H 1.08005 * 119.99556 * 199.01684 * 7 6 5 9 9 C 1.39281 * 120.00213 * 19.02095 * 7 6 5 10 10 N 1.31217 * 120.00058 * 4.00370 * 9 7 6 11 11 Si 1.86806 * 120.00090 * 184.00034 * 9 7 6 12 12 H 1.48500 * 109.46648 * 89.99925 * 11 9 7 13 13 H 1.48497 * 109.47285 * 210.00138 * 11 9 7 14 14 H 1.48497 * 109.47085 * 330.00398 * 11 9 7 15 15 C 1.34778 * 119.99943 * 89.99629 * 6 5 3 16 16 O 1.21787 * 120.00508 * 354.72104 * 15 6 5 17 17 C 1.41840 * 119.99428 * 174.72644 * 15 6 5 18 18 C 1.35491 * 119.99715 * 185.16260 * 17 15 6 19 19 C 1.46169 * 120.00352 * 185.10773 * 18 17 15 20 20 C 1.38246 * 125.82680 * 175.02844 * 19 18 17 21 21 C 1.39666 * 106.86199 * 179.85050 * 20 19 18 22 22 C 1.37900 * 106.91126 * 0.41024 * 21 20 19 23 23 C 1.46716 * 125.77970 * 179.74143 * 22 21 20 24 24 O 1.21604 * 119.99903 * 0.02583 * 23 22 21 25 25 O 1.34892 * 120.00110 * 180.02562 * 23 22 21 26 26 C 1.45200 * 116.99833 * 179.97438 * 25 23 22 27 27 O 1.34594 * 125.82146 * 355.34375 * 19 18 17 28 28 H 1.08999 * 109.46977 * 300.00668 * 1 2 3 29 29 H 1.08998 * 109.47098 * 60.00227 * 1 2 3 30 30 H 1.09000 * 109.46948 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47338 * 59.99629 * 5 3 2 32 32 H 1.09009 * 109.47189 * 299.99768 * 5 3 2 33 33 H 0.97006 * 120.00210 * 185.00202 * 10 9 7 34 34 H 1.08003 * 120.00583 * 5.16229 * 17 15 6 35 35 H 1.07998 * 120.00031 * 5.11803 * 18 17 15 36 36 H 1.08000 * 126.56377 * 359.96821 * 20 19 18 37 37 H 1.08004 * 126.54310 * 180.12146 * 21 20 19 38 38 H 1.08999 * 109.47393 * 299.99635 * 26 25 23 39 39 H 1.08995 * 109.47303 * 59.99791 * 26 25 23 40 40 H 1.09005 * 109.46716 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9818 2.6797 -0.0011 7 6 4.1748 3.3338 -1.1834 8 1 4.7608 4.2407 -1.2093 9 6 3.6160 2.8318 -2.3563 10 7 2.8395 1.7750 -2.3132 11 14 3.9720 3.6632 -3.9908 12 1 5.1821 3.0566 -4.6015 13 1 2.8134 3.4809 -4.9016 14 1 4.2036 5.1131 -3.7686 15 6 4.1732 3.3263 1.1659 16 8 3.9090 2.7739 2.2187 17 6 4.6825 4.6501 1.1679 18 6 4.9737 5.2621 2.3411 19 6 5.3919 6.6627 2.3508 20 6 5.6233 7.4303 3.4770 21 6 6.0047 8.6980 3.0318 22 6 5.9836 8.6623 1.6535 23 6 6.3105 9.7802 0.7613 24 8 6.6355 10.8553 1.2276 25 8 6.2507 9.6155 -0.5762 26 6 6.5870 10.7647 -1.3975 27 8 5.6117 7.4267 1.2647 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.9557 0.7809 -0.8908 32 1 3.9564 0.7806 0.8892 33 1 2.5091 1.3819 -3.1362 34 1 4.8382 5.1703 0.2343 35 1 4.8969 4.7151 3.2691 36 1 5.5292 7.1103 4.5042 37 1 6.2620 9.5459 3.6493 38 1 5.9045 11.5843 -1.1726 39 1 7.6101 11.0755 -1.1862 40 1 6.4991 10.4968 -2.4505 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001360711352.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:17 Heat of formation + Delta-G solvation = -144.266296 kcal Electronic energy + Delta-G solvation = -28618.367857 eV Core-core repulsion = 24174.387848 eV Total energy + Delta-G solvation = -4443.980009 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.51517 -40.24084 -39.61487 -38.52050 -36.64020 -35.67065 -34.73022 -33.47741 -32.99501 -31.82014 -29.93044 -28.67854 -27.62224 -26.40788 -25.29560 -24.07941 -22.17059 -21.47597 -20.58030 -19.89014 -19.20023 -18.44039 -17.25854 -17.01298 -16.82359 -16.80964 -16.57681 -15.76500 -15.52260 -15.38402 -15.06385 -14.60018 -14.37705 -14.03337 -13.60763 -13.39432 -13.34018 -13.16780 -13.08803 -12.61306 -12.41744 -12.37172 -12.22785 -11.97068 -11.58561 -11.44469 -11.29153 -10.99260 -10.98629 -10.87830 -10.67169 -10.49498 -10.26452 -9.89081 -9.84939 -9.67856 -9.13879 -8.82279 -8.22387 -7.89369 -6.70738 -4.19273 0.43870 1.51141 2.23316 2.70749 2.84336 2.96828 3.02816 3.07947 3.11585 3.58545 3.68370 3.95008 4.24409 4.41852 4.70241 4.78803 4.89331 4.92890 4.98764 5.00983 5.33441 5.49880 5.60628 5.68352 5.71032 5.75232 5.77508 5.92978 6.04754 6.10503 6.18109 6.24184 6.37461 6.49077 6.62423 6.84211 6.96179 7.10734 7.31313 7.50564 7.54314 8.01785 8.72854 9.07425 9.13701 9.56072 10.31162 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.012678 B = 0.003216 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.021984 B = 8705.614369 C =10431.486989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.374 6.374 3 C 0.495 3.505 4 O -0.508 6.508 5 C 0.153 3.847 6 N -0.403 5.403 7 C -0.321 4.321 8 H 0.111 0.889 9 C 0.039 3.961 10 N -0.868 5.868 11 Si 0.938 3.062 12 H -0.273 1.273 13 H -0.280 1.280 14 H -0.264 1.264 15 C 0.471 3.529 16 O -0.607 6.607 17 C -0.101 4.101 18 C -0.089 4.089 19 C 0.093 3.907 20 C -0.221 4.221 21 C -0.094 4.094 22 C -0.090 4.090 23 C 0.556 3.444 24 O -0.497 6.497 25 O -0.346 6.346 26 C 0.037 3.963 27 O -0.141 6.141 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.132 0.868 32 H 0.083 0.917 33 H 0.279 0.721 34 H 0.133 0.867 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.163 0.837 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.740 6.741 1.968 8.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.292 6.292 3 C 0.336 3.664 4 O -0.393 6.393 5 C 0.028 3.972 6 N -0.118 5.118 7 C -0.448 4.448 8 H 0.129 0.871 9 C -0.166 4.166 10 N -0.506 5.506 11 Si 0.764 3.236 12 H -0.198 1.198 13 H -0.206 1.206 14 H -0.189 1.189 15 C 0.265 3.735 16 O -0.497 6.497 17 C -0.122 4.122 18 C -0.110 4.110 19 C 0.040 3.960 20 C -0.240 4.240 21 C -0.113 4.113 22 C -0.141 4.141 23 C 0.402 3.598 24 O -0.388 6.388 25 O -0.262 6.262 26 C -0.057 4.057 27 O -0.036 6.036 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.150 0.850 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.151 0.849 35 H 0.178 0.822 36 H 0.182 0.818 37 H 0.181 0.819 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.269 6.910 2.039 8.374 hybrid contribution -0.234 0.648 -1.096 1.295 sum 4.035 7.558 0.942 8.620 Atomic orbital electron populations 1.22920 0.78760 1.01767 1.01570 1.86446 1.21579 1.35396 1.85740 1.23626 0.91965 0.80554 0.70230 1.90516 1.66503 1.36416 1.45902 1.20667 0.87716 0.84836 1.03966 1.43430 1.54001 1.08637 1.05755 1.19931 1.30803 1.09978 0.84132 0.87143 1.25413 0.93882 0.96542 1.00791 1.69475 1.30060 1.21547 1.29540 0.85715 0.78094 0.79855 0.79966 1.19846 1.20558 1.18870 1.16809 0.85809 0.86896 0.84022 1.90702 1.58948 1.68963 1.31040 1.22583 0.94647 0.96200 0.98731 1.21390 1.02278 0.86943 1.00403 1.21704 0.98321 0.92310 0.83658 1.22105 1.09197 0.93114 0.99574 1.22018 0.98729 0.98825 0.91772 1.20868 1.16189 0.84593 0.92423 1.19246 0.74073 0.85289 0.81186 1.90911 1.45336 1.25456 1.77052 1.86711 1.80193 1.41641 1.17652 1.23344 1.01272 0.86911 0.94142 1.84208 1.65234 1.19661 1.34500 0.93178 0.92737 0.89609 0.85033 0.89943 0.90952 0.84893 0.82151 0.81814 0.81902 0.91644 0.91655 0.87668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.56 101.05 1.07 1.83 16 2 O -0.37 -7.94 10.57 -39.27 -0.41 -8.35 16 3 C 0.49 12.05 5.82 36.00 0.21 12.26 16 4 O -0.51 -13.98 15.78 -18.75 -0.30 -14.27 16 5 C 0.15 3.57 5.21 -5.20 -0.03 3.54 16 6 N -0.40 -9.80 2.10 -119.29 -0.25 -10.05 16 7 C -0.32 -7.68 9.18 -15.09 -0.14 -7.82 16 8 H 0.11 2.47 5.82 -52.48 -0.31 2.16 16 9 C 0.04 0.92 5.27 -17.43 -0.09 0.83 16 10 N -0.87 -21.18 8.13 55.51 0.45 -20.73 16 11 Si 0.94 18.59 29.56 -169.99 -5.03 13.56 16 12 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 13 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 14 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 15 C 0.47 11.18 7.39 -14.88 -0.11 11.07 16 16 O -0.61 -15.50 15.78 5.11 0.08 -15.41 16 17 C -0.10 -2.03 8.80 -39.19 -0.34 -2.37 16 18 C -0.09 -1.52 9.59 -37.38 -0.36 -1.88 16 19 C 0.09 1.46 7.02 -36.40 -0.26 1.21 16 20 C -0.22 -2.85 10.88 -39.05 -0.42 -3.27 16 21 C -0.09 -1.21 10.63 -39.17 -0.42 -1.62 16 22 C -0.09 -1.36 7.21 -36.28 -0.26 -1.62 16 23 C 0.56 8.19 7.94 34.15 0.27 8.46 16 24 O -0.50 -7.65 16.66 -19.34 -0.32 -7.97 16 25 O -0.35 -4.80 10.58 -42.54 -0.45 -5.25 16 26 C 0.04 0.35 10.57 101.05 1.07 1.42 16 27 O -0.14 -2.36 10.30 3.30 0.03 -2.32 16 28 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 29 H 0.05 0.97 8.13 -51.93 -0.42 0.55 16 30 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.13 3.00 6.39 -51.93 -0.33 2.67 16 32 H 0.08 1.79 7.50 -51.92 -0.39 1.40 16 33 H 0.28 6.49 8.31 -40.82 -0.34 6.16 16 34 H 0.13 2.62 5.77 -52.48 -0.30 2.32 16 35 H 0.16 2.63 7.49 -52.49 -0.39 2.24 16 36 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.16 1.69 8.06 -52.48 -0.42 1.27 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 363.06 15.07 5.47 5.47 Total: -1.00 -31.77 363.06 -4.77 -36.55 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -4.24 Total: 6.77 kcal Atomic # 6 Polarization: 21.83 SS G_CDS: 0.19 Total: 22.01 kcal Atomic # 7 Polarization: -30.98 SS G_CDS: 0.20 Total: -30.78 kcal Atomic # 8 Polarization: -52.21 SS G_CDS: -1.37 Total: -53.58 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.77 -4.77 -36.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001360711352.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.720 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds