Wall clock time and date at job start Tue Mar 31 2020 20:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34235 * 117.00052 * 2 1 4 4 O 1.20826 * 119.99815 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00094 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47536 * 179.97438 * 5 3 2 7 7 C 1.36486 * 119.99585 * 270.00120 * 6 5 3 8 8 H 1.08005 * 119.99556 * 199.01684 * 7 6 5 9 9 C 1.39281 * 120.00213 * 19.02095 * 7 6 5 10 10 N 1.31217 * 120.00058 * 4.00370 * 9 7 6 11 11 Si 1.86806 * 120.00090 * 184.00034 * 9 7 6 12 12 H 1.48500 * 109.46648 * 89.99925 * 11 9 7 13 13 H 1.48497 * 109.47285 * 210.00138 * 11 9 7 14 14 H 1.48497 * 109.47085 * 330.00398 * 11 9 7 15 15 C 1.34778 * 119.99943 * 89.99629 * 6 5 3 16 16 O 1.21787 * 120.00508 * 354.72104 * 15 6 5 17 17 C 1.41840 * 119.99428 * 174.72644 * 15 6 5 18 18 C 1.35491 * 119.99715 * 185.16260 * 17 15 6 19 19 C 1.46169 * 120.00352 * 185.10773 * 18 17 15 20 20 C 1.38246 * 125.82680 * 175.02844 * 19 18 17 21 21 C 1.39666 * 106.86199 * 179.85050 * 20 19 18 22 22 C 1.37900 * 106.91126 * 0.41024 * 21 20 19 23 23 C 1.46716 * 125.77970 * 179.74143 * 22 21 20 24 24 O 1.21604 * 119.99903 * 0.02583 * 23 22 21 25 25 O 1.34892 * 120.00110 * 180.02562 * 23 22 21 26 26 C 1.45200 * 116.99833 * 179.97438 * 25 23 22 27 27 O 1.34594 * 125.82146 * 355.34375 * 19 18 17 28 28 H 1.08999 * 109.46977 * 300.00668 * 1 2 3 29 29 H 1.08998 * 109.47098 * 60.00227 * 1 2 3 30 30 H 1.09000 * 109.46948 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47338 * 59.99629 * 5 3 2 32 32 H 1.09009 * 109.47189 * 299.99768 * 5 3 2 33 33 H 0.97006 * 120.00210 * 185.00202 * 10 9 7 34 34 H 1.08003 * 120.00583 * 5.16229 * 17 15 6 35 35 H 1.07998 * 120.00031 * 5.11803 * 18 17 15 36 36 H 1.08000 * 126.56377 * 359.96821 * 20 19 18 37 37 H 1.08004 * 126.54310 * 180.12146 * 21 20 19 38 38 H 1.08999 * 109.47393 * 299.99635 * 26 25 23 39 39 H 1.08995 * 109.47303 * 59.99791 * 26 25 23 40 40 H 1.09005 * 109.46716 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9818 2.6797 -0.0011 7 6 4.1748 3.3338 -1.1834 8 1 4.7608 4.2407 -1.2093 9 6 3.6160 2.8318 -2.3563 10 7 2.8395 1.7750 -2.3132 11 14 3.9720 3.6632 -3.9908 12 1 5.1821 3.0566 -4.6015 13 1 2.8134 3.4809 -4.9016 14 1 4.2036 5.1131 -3.7686 15 6 4.1732 3.3263 1.1659 16 8 3.9090 2.7739 2.2187 17 6 4.6825 4.6501 1.1679 18 6 4.9737 5.2621 2.3411 19 6 5.3919 6.6627 2.3508 20 6 5.6233 7.4303 3.4770 21 6 6.0047 8.6980 3.0318 22 6 5.9836 8.6623 1.6535 23 6 6.3105 9.7802 0.7613 24 8 6.6355 10.8553 1.2276 25 8 6.2507 9.6155 -0.5762 26 6 6.5870 10.7647 -1.3975 27 8 5.6117 7.4267 1.2647 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.9557 0.7809 -0.8908 32 1 3.9564 0.7806 0.8892 33 1 2.5091 1.3819 -3.1362 34 1 4.8382 5.1703 0.2343 35 1 4.8969 4.7151 3.2691 36 1 5.5292 7.1103 4.5042 37 1 6.2620 9.5459 3.6493 38 1 5.9045 11.5843 -1.1726 39 1 7.6101 11.0755 -1.1862 40 1 6.4991 10.4968 -2.4505 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001360711352.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:16 Heat of formation + Delta-G solvation = -162.627206 kcal Electronic energy + Delta-G solvation = -28619.164046 eV Core-core repulsion = 24174.387848 eV Total energy + Delta-G solvation = -4444.776198 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.69358 -41.43040 -41.31571 -40.29824 -37.71800 -37.43699 -36.57496 -34.91914 -34.17557 -33.60358 -31.27503 -30.18496 -28.64528 -27.90398 -26.93909 -25.45027 -23.42388 -22.72735 -21.99807 -21.46819 -20.81515 -19.57304 -18.72963 -18.64194 -18.39391 -18.12090 -17.92261 -17.27831 -17.03240 -16.87803 -16.56086 -16.29294 -15.91743 -15.36349 -15.09982 -14.92375 -14.35306 -14.30514 -14.22087 -14.11827 -14.07936 -13.69831 -13.46758 -13.27365 -13.13931 -13.09125 -12.83443 -12.56782 -12.35936 -12.11891 -12.07788 -11.93240 -11.60693 -11.55171 -11.49409 -11.04371 -10.98910 -10.66936 -10.01986 -9.21483 -8.45190 -6.03172 -0.83909 0.27780 1.17022 1.36280 1.44500 1.51666 1.56933 1.72289 1.79835 1.88116 1.99618 2.28729 2.53580 2.83413 3.15108 3.49756 3.74125 3.78125 4.18632 4.21140 4.25094 4.30231 4.36176 4.37115 4.42224 4.43191 4.53015 4.63799 4.66128 4.72128 4.81467 4.83494 4.96815 5.06532 5.28241 5.31213 5.38523 5.56007 5.72253 5.77045 6.23824 6.45122 6.94852 7.25198 7.35284 7.76687 8.57403 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.012678 B = 0.003216 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.021984 B = 8705.614369 C =10431.486989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.375 6.375 3 C 0.496 3.504 4 O -0.548 6.548 5 C 0.153 3.847 6 N -0.421 5.421 7 C -0.343 4.343 8 H 0.117 0.883 9 C -0.001 4.001 10 N -0.895 5.895 11 Si 1.000 3.000 12 H -0.260 1.260 13 H -0.287 1.287 14 H -0.263 1.263 15 C 0.471 3.529 16 O -0.634 6.634 17 C -0.151 4.151 18 C -0.033 4.033 19 C 0.051 3.949 20 C -0.180 4.180 21 C -0.086 4.086 22 C -0.100 4.100 23 C 0.556 3.444 24 O -0.506 6.506 25 O -0.363 6.363 26 C 0.028 3.972 27 O -0.162 6.162 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.090 0.910 33 H 0.278 0.722 34 H 0.130 0.870 35 H 0.173 0.827 36 H 0.201 0.799 37 H 0.194 0.806 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.598 8.435 2.938 10.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.292 6.292 3 C 0.340 3.660 4 O -0.437 6.437 5 C 0.027 3.973 6 N -0.137 5.137 7 C -0.470 4.470 8 H 0.135 0.865 9 C -0.203 4.203 10 N -0.534 5.534 11 Si 0.823 3.177 12 H -0.185 1.185 13 H -0.213 1.213 14 H -0.187 1.187 15 C 0.266 3.734 16 O -0.525 6.525 17 C -0.171 4.171 18 C -0.054 4.054 19 C -0.001 4.001 20 C -0.199 4.199 21 C -0.106 4.106 22 C -0.150 4.150 23 C 0.402 3.598 24 O -0.397 6.397 25 O -0.279 6.279 26 C -0.065 4.065 27 O -0.057 6.057 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.152 0.848 31 H 0.149 0.851 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.148 0.852 35 H 0.190 0.810 36 H 0.218 0.782 37 H 0.211 0.789 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.145 8.590 3.004 10.454 hybrid contribution -0.444 0.353 -1.183 1.312 sum 4.701 8.943 1.821 10.266 Atomic orbital electron populations 1.23272 0.76363 1.04785 1.01050 1.86418 1.23921 1.33738 1.85084 1.23822 0.92381 0.80706 0.69099 1.90477 1.67401 1.37809 1.47994 1.20701 0.87413 0.85051 1.04110 1.43540 1.55014 1.09007 1.06095 1.20190 1.31709 1.10725 0.84395 0.86549 1.26212 0.93584 0.96999 1.03465 1.69546 1.31239 1.22774 1.29859 0.84794 0.77858 0.78923 0.76104 1.18524 1.21304 1.18701 1.17327 0.84770 0.87808 0.83501 1.90648 1.60046 1.70033 1.31801 1.22288 0.99695 0.95231 0.99908 1.21602 0.96706 0.87460 0.99606 1.21660 1.01800 0.92071 0.84617 1.22606 1.04878 0.92135 1.00289 1.22454 0.97470 0.99665 0.90977 1.21357 1.15699 0.84203 0.93732 1.19272 0.73844 0.85073 0.81592 1.90900 1.45863 1.25671 1.77298 1.86699 1.80007 1.43655 1.17511 1.23701 1.01966 0.86046 0.94752 1.84183 1.65733 1.20408 1.35424 0.93212 0.93797 0.84787 0.85097 0.89257 0.91173 0.85223 0.81020 0.78171 0.78925 0.90974 0.90753 0.85264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.32 10.56 113.37 1.20 2.52 16 2 O -0.37 -16.08 10.57 -51.46 -0.54 -16.63 16 3 C 0.50 24.95 5.82 71.23 0.41 25.37 16 4 O -0.55 -31.25 15.78 21.97 0.35 -30.90 16 5 C 0.15 7.38 5.21 85.63 0.45 7.82 16 6 N -0.42 -21.30 2.10 -649.51 -1.36 -22.67 16 7 C -0.34 -17.02 9.18 84.22 0.77 -16.25 16 8 H 0.12 5.42 5.82 -2.91 -0.02 5.40 16 9 C 0.00 -0.04 5.27 85.04 0.45 0.41 16 10 N -0.89 -45.08 8.13 21.72 0.18 -44.90 16 11 Si 1.00 38.78 29.56 68.60 2.03 40.81 16 12 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 13 H -0.29 -11.34 7.11 99.48 0.71 -10.63 16 14 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 15 C 0.47 23.09 7.39 85.13 0.63 23.72 16 16 O -0.63 -33.08 15.78 -4.63 -0.07 -33.15 16 17 C -0.15 -6.21 8.80 22.53 0.20 -6.01 16 18 C -0.03 -1.09 9.59 23.69 0.23 -0.86 16 19 C 0.05 1.49 7.02 24.33 0.17 1.66 16 20 C -0.18 -3.92 10.88 22.62 0.25 -3.67 16 21 C -0.09 -1.90 10.63 22.53 0.24 -1.66 16 22 C -0.10 -2.79 7.21 24.41 0.18 -2.62 16 23 C 0.56 15.46 7.94 70.04 0.56 16.02 16 24 O -0.51 -14.52 16.66 19.49 0.32 -14.20 16 25 O -0.36 -9.63 10.58 -56.61 -0.60 -10.22 16 26 C 0.03 0.47 10.57 113.37 1.20 1.67 16 27 O -0.16 -5.22 10.30 -9.66 -0.10 -5.32 16 28 H 0.05 1.68 8.13 -2.39 -0.02 1.66 16 29 H 0.04 1.57 8.13 -2.39 -0.02 1.55 16 30 H 0.13 3.19 8.14 -2.39 -0.02 3.17 16 31 H 0.13 6.24 6.39 -2.39 -0.02 6.23 16 32 H 0.09 4.05 7.50 -2.38 -0.02 4.03 16 33 H 0.28 13.31 8.31 -92.70 -0.77 12.54 16 34 H 0.13 5.34 5.77 -2.91 -0.02 5.32 16 35 H 0.17 5.32 7.49 -2.91 -0.02 5.30 16 36 H 0.20 2.86 8.06 -2.91 -0.02 2.83 16 37 H 0.19 3.07 8.06 -2.91 -0.02 3.05 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.13 1.53 8.14 -2.38 -0.02 1.51 16 Total: -1.00 -71.14 363.06 8.22 -62.92 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 1.10 Total: 26.15 kcal Atomic # 6 Polarization: 41.19 SS G_CDS: 6.92 Total: 48.11 kcal Atomic # 7 Polarization: -66.38 SS G_CDS: -1.19 Total: -67.57 kcal Atomic # 8 Polarization: -109.78 SS G_CDS: -0.64 Total: -110.42 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Total: -71.14 8.22 -62.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001360711352.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.705 kcal (2) G-P(sol) polarization free energy of solvation -71.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds