Wall clock time and date at job start Tue Mar 31 2020 20:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00126 * 2 1 4 4 O 1.20833 * 119.99690 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00066 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.46750 * 179.97438 * 5 3 2 7 7 C 1.36478 * 120.00365 * 263.35242 * 6 5 3 8 8 H 1.08002 * 120.00369 * 210.63095 * 7 6 5 9 9 C 1.39289 * 120.00178 * 30.62613 * 7 6 5 10 10 N 1.31223 * 119.99461 * 5.80892 * 9 7 6 11 11 Si 1.86790 * 120.00261 * 185.80179 * 9 7 6 12 12 H 1.48502 * 109.47455 * 60.00663 * 11 9 7 13 13 H 1.48512 * 109.47155 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47236 * 300.00056 * 11 9 7 15 15 C 1.34777 * 119.99836 * 83.36011 * 6 5 3 16 16 O 1.21802 * 120.00050 * 5.12957 * 15 6 5 17 17 C 1.41834 * 120.00403 * 185.13498 * 15 6 5 18 18 C 1.35485 * 120.00614 * 187.78953 * 17 15 6 19 19 C 1.46177 * 120.00041 * 20.31054 * 18 17 15 20 20 C 1.38248 * 125.82574 * 201.99659 * 19 18 17 21 21 C 1.39664 * 106.85860 * 179.84694 * 20 19 18 22 22 C 1.37898 * 106.91418 * 0.40704 * 21 20 19 23 23 C 1.46720 * 125.77848 * 179.76424 * 22 21 20 24 24 O 1.21589 * 120.00101 * 359.97438 * 23 22 21 25 25 O 1.34892 * 119.99540 * 180.02562 * 23 22 21 26 26 C 1.45202 * 116.99752 * 179.97438 * 25 23 22 27 27 O 1.34591 * 125.82008 * 22.30215 * 19 18 17 28 28 H 1.09000 * 109.47301 * 300.00330 * 1 2 3 29 29 H 1.09000 * 109.47008 * 60.00109 * 1 2 3 30 30 H 1.08995 * 109.47186 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46957 * 59.99967 * 5 3 2 32 32 H 1.08996 * 109.46815 * 299.99675 * 5 3 2 33 33 H 0.97002 * 119.99823 * 180.02562 * 10 9 7 34 34 H 1.07998 * 119.99834 * 7.50348 * 17 15 6 35 35 H 1.07997 * 120.00125 * 200.32389 * 18 17 15 36 36 H 1.08000 * 126.56702 * 359.97290 * 20 19 18 37 37 H 1.08008 * 126.54566 * 180.12448 * 21 20 19 38 38 H 1.08998 * 109.47197 * 180.02562 * 26 25 23 39 39 H 1.09005 * 109.47154 * 299.99695 * 26 25 23 40 40 H 1.08999 * 109.46957 * 60.00019 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.3068 3.2947 -1.1744 8 1 5.0421 4.0857 -1.1842 9 6 3.6905 2.9021 -2.3602 10 7 2.7171 2.0224 -2.3336 11 14 4.2493 3.6278 -3.9881 12 1 5.6831 3.3084 -4.2064 13 1 3.4397 3.0508 -5.0913 14 1 4.0690 5.1016 -3.9609 15 6 4.0428 3.3650 1.1588 16 8 3.8438 2.7931 2.2157 17 6 4.3386 4.7521 1.1479 18 6 4.5560 5.4077 2.3135 19 6 4.9260 4.6607 3.5143 20 6 4.7656 5.0929 4.8176 21 6 5.2446 4.0740 5.6440 22 6 5.6878 3.0625 4.8181 23 6 6.2783 1.7932 5.2573 24 8 6.4117 1.5630 6.4437 25 8 6.6742 0.8821 4.3447 26 6 7.2502 -0.3508 4.8511 27 8 5.4863 3.4372 3.5394 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.9564 0.7805 -0.8891 32 1 3.9557 0.7810 0.8908 33 1 2.2881 1.7487 -3.1594 34 1 4.3953 5.2848 0.2101 35 1 4.4556 6.4822 2.3555 36 1 4.3478 6.0366 5.1358 37 1 5.2681 4.0792 6.7239 38 1 7.5255 -0.9935 4.0149 39 1 8.1381 -0.1218 5.4405 40 1 6.5199 -0.8624 5.4780 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001360711353.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:20 Heat of formation + Delta-G solvation = -138.615319 kcal Electronic energy + Delta-G solvation = -29926.256438 eV Core-core repulsion = 25482.521474 eV Total energy + Delta-G solvation = -4443.734964 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.04025 -39.94324 -39.52639 -38.43750 -36.33531 -35.59465 -34.68029 -33.20264 -32.50396 -31.77517 -29.62407 -28.55806 -27.36906 -26.35059 -25.15522 -23.83209 -21.88128 -21.26906 -20.38246 -19.81013 -19.03640 -18.15431 -17.20954 -16.75642 -16.63347 -16.53727 -16.38154 -15.55368 -15.37475 -15.19381 -14.83050 -14.57740 -14.01906 -13.76103 -13.60269 -13.25982 -13.11253 -12.83648 -12.66749 -12.57622 -12.42755 -12.18623 -12.07805 -11.83676 -11.54040 -11.35212 -11.30651 -10.95952 -10.75319 -10.71590 -10.68449 -10.53734 -9.82662 -9.73468 -9.53605 -9.44419 -9.13308 -8.69427 -7.96288 -7.58359 -6.68723 -4.21969 0.77301 1.71664 2.62866 2.95991 3.07097 3.07243 3.09012 3.19767 3.42159 3.61213 3.69689 3.95564 4.36249 4.68699 4.88625 4.95830 5.12807 5.15941 5.20345 5.22894 5.54796 5.67544 5.69432 5.76999 5.87483 5.92984 5.99181 6.01683 6.17217 6.29711 6.38581 6.40982 6.46508 6.55887 6.68602 6.90706 7.12142 7.36538 7.43354 7.54538 7.89026 8.08142 8.79287 9.11259 9.22741 9.69582 10.37168 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.004075 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.932832 B = 6870.285323 C = 7680.503478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.377 6.377 3 C 0.488 3.512 4 O -0.497 6.497 5 C 0.156 3.844 6 N -0.407 5.407 7 C -0.331 4.331 8 H 0.103 0.897 9 C 0.043 3.957 10 N -0.857 5.857 11 Si 0.934 3.066 12 H -0.269 1.269 13 H -0.282 1.282 14 H -0.270 1.270 15 C 0.476 3.524 16 O -0.588 6.588 17 C -0.111 4.111 18 C -0.096 4.096 19 C 0.110 3.890 20 C -0.234 4.234 21 C -0.108 4.108 22 C -0.084 4.084 23 C 0.558 3.442 24 O -0.505 6.505 25 O -0.342 6.342 26 C 0.037 3.963 27 O -0.097 6.097 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.085 0.915 33 H 0.278 0.722 34 H 0.142 0.858 35 H 0.154 0.846 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.334 0.076 5.455 6.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.295 6.295 3 C 0.329 3.671 4 O -0.382 6.382 5 C 0.031 3.969 6 N -0.123 5.123 7 C -0.459 4.459 8 H 0.121 0.879 9 C -0.165 4.165 10 N -0.492 5.492 11 Si 0.760 3.240 12 H -0.195 1.195 13 H -0.207 1.207 14 H -0.195 1.195 15 C 0.270 3.730 16 O -0.475 6.475 17 C -0.132 4.132 18 C -0.118 4.118 19 C 0.055 3.945 20 C -0.253 4.253 21 C -0.128 4.128 22 C -0.135 4.135 23 C 0.405 3.595 24 O -0.396 6.396 25 O -0.257 6.257 26 C -0.057 4.057 27 O 0.011 5.989 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.134 0.866 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.160 0.840 35 H 0.171 0.829 36 H 0.173 0.827 37 H 0.174 0.826 38 H 0.121 0.879 39 H 0.081 0.919 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.000 -0.374 5.845 7.092 hybrid contribution -0.341 0.313 -0.965 1.071 sum 3.659 -0.061 4.879 6.099 Atomic orbital electron populations 1.22914 0.78698 1.01752 1.01601 1.86446 1.21672 1.35525 1.85829 1.23736 0.92103 0.80594 0.70702 1.90508 1.66390 1.36312 1.44957 1.20410 0.87406 0.85674 1.03446 1.43224 1.54830 1.07697 1.06566 1.19631 1.22219 1.20190 0.83874 0.87935 1.25552 0.93946 0.96358 1.00655 1.69532 1.20387 1.29918 1.29389 0.85871 0.78761 0.79445 0.79943 1.19451 1.20686 1.19455 1.17190 0.84194 0.87356 0.84280 1.90747 1.56593 1.69869 1.30297 1.22683 0.95518 0.96623 0.98408 1.21319 1.03654 0.97996 0.88825 1.21303 0.95649 0.82396 0.95137 1.21979 1.10023 1.02220 0.91116 1.21851 0.98785 0.91939 1.00232 1.20839 1.13609 0.95789 0.83308 1.19317 0.74572 0.81941 0.83667 1.90871 1.53848 1.77772 1.17150 1.86751 1.72246 1.27948 1.38798 1.23298 0.98101 0.83176 1.01092 1.84471 1.59150 1.29118 1.26145 0.93188 0.92660 0.89648 0.86562 0.89674 0.91119 0.84007 0.82879 0.82676 0.82644 0.87854 0.91947 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.85 16 2 O -0.38 -8.13 10.57 -39.26 -0.41 -8.54 16 3 C 0.49 11.97 5.96 36.01 0.21 12.19 16 4 O -0.50 -13.64 15.26 -18.76 -0.29 -13.93 16 5 C 0.16 3.69 5.17 -5.19 -0.03 3.66 16 6 N -0.41 -9.93 2.15 -119.29 -0.26 -10.18 16 7 C -0.33 -7.82 8.56 -15.09 -0.13 -7.95 16 8 H 0.10 2.22 6.68 -52.49 -0.35 1.87 16 9 C 0.04 1.00 5.16 -17.42 -0.09 0.91 16 10 N -0.86 -21.23 8.67 55.51 0.48 -20.75 16 11 Si 0.93 18.12 29.56 -169.99 -5.02 13.09 16 12 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 13 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 14 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 15 C 0.48 11.42 6.78 -14.89 -0.10 11.32 16 16 O -0.59 -15.23 12.40 -19.62 -0.24 -15.48 16 17 C -0.11 -2.20 9.04 -39.19 -0.35 -2.55 16 18 C -0.10 -1.62 10.08 -37.38 -0.38 -1.99 16 19 C 0.11 2.03 5.87 -36.39 -0.21 1.82 16 20 C -0.23 -3.66 10.88 -39.05 -0.42 -4.08 16 21 C -0.11 -1.76 10.63 -39.17 -0.42 -2.18 16 22 C -0.08 -1.59 7.21 -36.28 -0.26 -1.85 16 23 C 0.56 10.20 7.94 34.16 0.27 10.47 16 24 O -0.51 -9.29 16.66 -19.33 -0.32 -9.61 16 25 O -0.34 -5.92 10.58 -42.54 -0.45 -6.37 16 26 C 0.04 0.45 10.57 101.05 1.07 1.51 16 27 O -0.10 -2.04 7.60 -22.60 -0.17 -2.21 16 28 H 0.05 0.87 8.13 -51.93 -0.42 0.44 16 29 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.12 2.68 6.88 -51.93 -0.36 2.33 16 32 H 0.09 1.94 7.56 -51.93 -0.39 1.55 16 33 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 34 H 0.14 2.55 6.54 -52.49 -0.34 2.20 16 35 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 36 H 0.16 1.87 8.06 -52.49 -0.42 1.44 16 37 H 0.16 2.12 8.06 -52.48 -0.42 1.70 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 358.13 15.07 5.40 5.40 Total: -1.00 -33.00 358.13 -5.45 -38.44 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -4.38 Total: 6.99 kcal Atomic # 6 Polarization: 22.91 SS G_CDS: 0.23 Total: 23.13 kcal Atomic # 7 Polarization: -31.15 SS G_CDS: 0.23 Total: -30.93 kcal Atomic # 8 Polarization: -54.24 SS G_CDS: -1.89 Total: -56.13 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.02 Total: 13.09 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.00 -5.45 -38.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001360711353.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.171 kcal (2) G-P(sol) polarization free energy of solvation -32.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds