Wall clock time and date at job start Tue Mar 31 2020 20:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00126 * 2 1 4 4 O 1.20833 * 119.99690 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00066 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.46750 * 179.97438 * 5 3 2 7 7 C 1.36478 * 120.00365 * 263.35242 * 6 5 3 8 8 H 1.08002 * 120.00369 * 210.63095 * 7 6 5 9 9 C 1.39289 * 120.00178 * 30.62613 * 7 6 5 10 10 N 1.31223 * 119.99461 * 5.80892 * 9 7 6 11 11 Si 1.86790 * 120.00261 * 185.80179 * 9 7 6 12 12 H 1.48502 * 109.47455 * 60.00663 * 11 9 7 13 13 H 1.48512 * 109.47155 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47236 * 300.00056 * 11 9 7 15 15 C 1.34777 * 119.99836 * 83.36011 * 6 5 3 16 16 O 1.21802 * 120.00050 * 5.12957 * 15 6 5 17 17 C 1.41834 * 120.00403 * 185.13498 * 15 6 5 18 18 C 1.35485 * 120.00614 * 187.78953 * 17 15 6 19 19 C 1.46177 * 120.00041 * 20.31054 * 18 17 15 20 20 C 1.38248 * 125.82574 * 201.99659 * 19 18 17 21 21 C 1.39664 * 106.85860 * 179.84694 * 20 19 18 22 22 C 1.37898 * 106.91418 * 0.40704 * 21 20 19 23 23 C 1.46720 * 125.77848 * 179.76424 * 22 21 20 24 24 O 1.21589 * 120.00101 * 359.97438 * 23 22 21 25 25 O 1.34892 * 119.99540 * 180.02562 * 23 22 21 26 26 C 1.45202 * 116.99752 * 179.97438 * 25 23 22 27 27 O 1.34591 * 125.82008 * 22.30215 * 19 18 17 28 28 H 1.09000 * 109.47301 * 300.00330 * 1 2 3 29 29 H 1.09000 * 109.47008 * 60.00109 * 1 2 3 30 30 H 1.08995 * 109.47186 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46957 * 59.99967 * 5 3 2 32 32 H 1.08996 * 109.46815 * 299.99675 * 5 3 2 33 33 H 0.97002 * 119.99823 * 180.02562 * 10 9 7 34 34 H 1.07998 * 119.99834 * 7.50348 * 17 15 6 35 35 H 1.07997 * 120.00125 * 200.32389 * 18 17 15 36 36 H 1.08000 * 126.56702 * 359.97290 * 20 19 18 37 37 H 1.08008 * 126.54566 * 180.12448 * 21 20 19 38 38 H 1.08998 * 109.47197 * 180.02562 * 26 25 23 39 39 H 1.09005 * 109.47154 * 299.99695 * 26 25 23 40 40 H 1.08999 * 109.46957 * 60.00019 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.3068 3.2947 -1.1744 8 1 5.0421 4.0857 -1.1842 9 6 3.6905 2.9021 -2.3602 10 7 2.7171 2.0224 -2.3336 11 14 4.2493 3.6278 -3.9881 12 1 5.6831 3.3084 -4.2064 13 1 3.4397 3.0508 -5.0913 14 1 4.0690 5.1016 -3.9609 15 6 4.0428 3.3650 1.1588 16 8 3.8438 2.7931 2.2157 17 6 4.3386 4.7521 1.1479 18 6 4.5560 5.4077 2.3135 19 6 4.9260 4.6607 3.5143 20 6 4.7656 5.0929 4.8176 21 6 5.2446 4.0740 5.6440 22 6 5.6878 3.0625 4.8181 23 6 6.2783 1.7932 5.2573 24 8 6.4117 1.5630 6.4437 25 8 6.6742 0.8821 4.3447 26 6 7.2502 -0.3508 4.8511 27 8 5.4863 3.4372 3.5394 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.9564 0.7805 -0.8891 32 1 3.9557 0.7810 0.8908 33 1 2.2881 1.7487 -3.1594 34 1 4.3953 5.2848 0.2101 35 1 4.4556 6.4822 2.3555 36 1 4.3478 6.0366 5.1358 37 1 5.2681 4.0792 6.7239 38 1 7.5255 -0.9935 4.0149 39 1 8.1381 -0.1218 5.4405 40 1 6.5199 -0.8624 5.4780 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001360711353.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:20 Heat of formation + Delta-G solvation = -157.485542 kcal Electronic energy + Delta-G solvation = -29927.074712 eV Core-core repulsion = 25482.521474 eV Total energy + Delta-G solvation = -4444.553238 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.42134 -41.37959 -41.23592 -40.19657 -37.66463 -37.36262 -36.51605 -34.68461 -33.87797 -33.54558 -31.09452 -30.12419 -28.55817 -27.88493 -26.84039 -25.28403 -23.34682 -22.63847 -21.94628 -21.44449 -20.65464 -19.52709 -18.70525 -18.51708 -18.29964 -18.02262 -17.75839 -17.31735 -17.01605 -16.67703 -16.43704 -16.16890 -15.45157 -15.35476 -15.00214 -14.77655 -14.31296 -14.24866 -14.13815 -14.07017 -13.97968 -13.72666 -13.35855 -13.16082 -13.05962 -13.00112 -12.88144 -12.66373 -12.42790 -12.11584 -12.03682 -11.91078 -11.56438 -11.42243 -11.03089 -10.97303 -10.81481 -10.49434 -9.76623 -9.00186 -8.41258 -6.03802 -0.64820 0.35827 1.38670 1.48004 1.49524 1.59468 1.63167 1.78240 1.85090 1.98855 2.15616 2.32539 2.67493 3.01338 3.18994 3.61963 3.86948 3.94938 4.21651 4.24525 4.28874 4.33561 4.37028 4.39880 4.51679 4.57401 4.62567 4.64450 4.65360 4.70030 4.79703 4.94517 5.09610 5.13317 5.31751 5.36547 5.57119 5.65911 5.77454 6.02381 6.31409 6.54957 7.03624 7.25946 7.47379 7.93104 8.65155 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.004075 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.932832 B = 6870.285323 C = 7680.503478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.380 6.380 3 C 0.490 3.510 4 O -0.533 6.533 5 C 0.158 3.842 6 N -0.426 5.426 7 C -0.349 4.349 8 H 0.116 0.884 9 C 0.000 4.000 10 N -0.891 5.891 11 Si 1.002 2.998 12 H -0.260 1.260 13 H -0.289 1.289 14 H -0.263 1.263 15 C 0.471 3.529 16 O -0.617 6.617 17 C -0.162 4.162 18 C -0.044 4.044 19 C 0.064 3.936 20 C -0.204 4.204 21 C -0.102 4.102 22 C -0.113 4.113 23 C 0.555 3.445 24 O -0.514 6.514 25 O -0.364 6.364 26 C 0.028 3.972 27 O -0.130 6.130 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.133 0.867 31 H 0.114 0.886 32 H 0.082 0.918 33 H 0.273 0.727 34 H 0.156 0.844 35 H 0.210 0.790 36 H 0.200 0.800 37 H 0.183 0.817 38 H 0.129 0.871 39 H 0.076 0.924 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.783 1.751 6.439 8.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.297 6.297 3 C 0.333 3.667 4 O -0.420 6.420 5 C 0.032 3.968 6 N -0.143 5.143 7 C -0.476 4.476 8 H 0.134 0.866 9 C -0.203 4.203 10 N -0.528 5.528 11 Si 0.825 3.175 12 H -0.185 1.185 13 H -0.214 1.214 14 H -0.188 1.188 15 C 0.266 3.734 16 O -0.506 6.506 17 C -0.182 4.182 18 C -0.065 4.065 19 C 0.010 3.990 20 C -0.222 4.222 21 C -0.122 4.122 22 C -0.164 4.164 23 C 0.402 3.598 24 O -0.406 6.406 25 O -0.280 6.280 26 C -0.064 4.064 27 O -0.023 6.023 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.151 0.849 31 H 0.132 0.868 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.173 0.827 35 H 0.226 0.774 36 H 0.217 0.783 37 H 0.201 0.799 38 H 0.147 0.853 39 H 0.094 0.906 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.468 1.294 6.835 8.268 hybrid contribution -0.456 -0.236 -0.957 1.086 sum 4.011 1.058 5.878 7.194 Atomic orbital electron populations 1.23259 0.76252 1.04744 1.01103 1.86416 1.24076 1.34009 1.85234 1.23878 0.92430 0.80768 0.69660 1.90464 1.67184 1.37548 1.46850 1.20358 0.87238 0.86263 1.02956 1.43378 1.55921 1.07850 1.07136 1.19979 1.22826 1.20914 0.83911 0.86634 1.26396 0.93765 0.96546 1.03618 1.69641 1.21926 1.31669 1.29570 0.84849 0.78400 0.78706 0.75573 1.18495 1.21440 1.18793 1.17872 0.83046 0.88894 0.83631 1.90705 1.57674 1.71069 1.31177 1.22625 1.00593 0.94596 1.00427 1.22110 0.97342 1.00232 0.86782 1.21971 0.97515 0.82433 0.97056 1.22527 1.07151 1.03103 0.89437 1.22318 0.97300 0.91073 1.01503 1.21366 1.14679 0.96907 0.83458 1.19395 0.74511 0.82186 0.83688 1.90843 1.54440 1.78091 1.17212 1.86731 1.72353 1.29392 1.39521 1.23675 0.98497 0.81671 1.02597 1.84431 1.60104 1.30478 1.27266 0.93355 0.93521 0.84888 0.86821 0.90019 0.91667 0.82668 0.77361 0.78253 0.79949 0.85277 0.90560 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.39 10.56 113.37 1.20 2.58 16 2 O -0.38 -16.73 10.57 -51.41 -0.54 -17.28 16 3 C 0.49 24.97 5.96 71.24 0.42 25.40 16 4 O -0.53 -30.30 15.26 21.94 0.33 -29.97 16 5 C 0.16 7.82 5.17 85.63 0.44 8.26 16 6 N -0.43 -21.52 2.15 -649.49 -1.40 -22.91 16 7 C -0.35 -16.82 8.56 84.22 0.72 -16.10 16 8 H 0.12 5.04 6.68 -2.91 -0.02 5.02 16 9 C 0.00 0.01 5.16 85.04 0.44 0.45 16 10 N -0.89 -45.61 8.67 21.72 0.19 -45.43 16 11 Si 1.00 37.44 29.56 68.60 2.03 39.47 16 12 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 13 H -0.29 -10.98 7.11 99.48 0.71 -10.28 16 14 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 15 C 0.47 23.11 6.78 85.13 0.58 23.69 16 16 O -0.62 -32.90 12.40 18.96 0.24 -32.66 16 17 C -0.16 -6.30 9.04 22.52 0.20 -6.10 16 18 C -0.04 -1.36 10.08 23.70 0.24 -1.12 16 19 C 0.06 2.23 5.87 24.34 0.14 2.38 16 20 C -0.20 -5.58 10.88 22.62 0.25 -5.34 16 21 C -0.10 -3.07 10.63 22.53 0.24 -2.83 16 22 C -0.11 -4.23 7.21 24.41 0.18 -4.05 16 23 C 0.55 20.33 7.94 70.04 0.56 20.89 16 24 O -0.51 -18.62 16.66 19.54 0.33 -18.29 16 25 O -0.36 -12.80 10.58 -56.60 -0.60 -13.40 16 26 C 0.03 0.66 10.57 113.37 1.20 1.86 16 27 O -0.13 -5.44 7.60 15.14 0.12 -5.32 16 28 H 0.05 1.68 8.13 -2.39 -0.02 1.66 16 29 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 30 H 0.13 3.28 8.14 -2.39 -0.02 3.26 16 31 H 0.11 5.55 6.88 -2.39 -0.02 5.54 16 32 H 0.08 3.96 7.56 -2.39 -0.02 3.95 16 33 H 0.27 13.49 8.30 -92.71 -0.77 12.72 16 34 H 0.16 5.47 6.54 -2.91 -0.02 5.46 16 35 H 0.21 3.90 8.06 -2.91 -0.02 3.87 16 36 H 0.20 3.57 8.06 -2.91 -0.02 3.55 16 37 H 0.18 4.36 8.06 -2.91 -0.02 4.33 16 38 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -75.64 358.13 8.58 -67.06 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: 1.09 Total: 28.77 kcal Atomic # 6 Polarization: 43.16 SS G_CDS: 6.80 Total: 49.96 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: -1.21 Total: -68.34 kcal Atomic # 8 Polarization: -116.79 SS G_CDS: -0.13 Total: -116.92 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.03 Total: 39.47 kcal Total: -75.64 8.58 -67.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001360711353.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.423 kcal (2) G-P(sol) polarization free energy of solvation -75.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds