Wall clock time and date at job start Tue Mar 31 2020 19:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42907 * 113.99712 * 2 1 4 4 C 1.50703 * 109.46959 * 179.97438 * 3 2 1 5 5 N 1.30164 * 121.06142 * 89.97911 * 4 3 2 6 6 S 1.69958 * 105.74603 * 180.02562 * 5 4 3 7 7 C 1.72304 * 94.56191 * 359.97438 * 6 5 4 8 8 N 1.38700 * 127.50287 * 180.02562 * 7 6 5 9 9 C 1.34781 * 119.99666 * 359.97438 * 8 7 6 10 10 O 1.21595 * 120.00273 * 359.97438 * 9 8 7 11 11 C 1.47383 * 119.99807 * 180.02562 * 9 8 7 12 12 C 1.41310 * 126.42059 * 359.68056 * 11 9 8 13 13 N 1.30441 * 108.02345 * 179.81969 * 12 11 9 14 14 N 1.39929 * 108.90462 * 0.45059 * 13 12 11 15 15 C 1.46506 * 125.75211 * 179.70732 * 14 13 12 16 16 C 1.50698 * 109.47298 * 270.00227 * 15 14 13 17 17 H 1.08003 * 119.99907 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00120 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00195 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99790 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47112 * 90.00283 * 20 18 16 22 22 H 1.48494 * 109.47187 * 210.00049 * 20 18 16 23 23 H 1.48506 * 109.47183 * 330.00378 * 20 18 16 24 24 C 1.34265 * 108.49746 * 359.71078 * 14 13 12 25 25 C 1.50700 * 126.29526 * 179.97438 * 24 14 13 26 26 N 1.31235 * 121.06747 * 269.99447 * 4 3 2 27 27 H 1.08998 * 109.47336 * 299.99602 * 1 2 3 28 28 H 1.08995 * 109.47438 * 60.00193 * 1 2 3 29 29 H 1.09003 * 109.47244 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47051 * 60.00185 * 3 2 1 31 31 H 1.08998 * 109.47013 * 299.99743 * 3 2 1 32 32 H 0.96998 * 120.00511 * 179.97438 * 8 7 6 33 33 H 1.08001 * 125.98404 * 0.02562 * 12 11 9 34 34 H 1.08998 * 109.47135 * 30.00385 * 15 14 13 35 35 H 1.09000 * 109.46718 * 149.99842 * 15 14 13 36 36 H 0.96995 * 120.00288 * 179.97438 * 19 18 16 37 37 H 1.08997 * 109.46786 * 270.00171 * 25 24 14 38 38 H 1.09006 * 109.47160 * 29.99302 * 25 24 14 39 39 H 1.08991 * 109.47193 * 149.99857 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 7 4.1823 1.1330 -1.1141 6 16 5.8162 1.0031 -0.6645 7 6 5.4951 1.0299 1.0282 8 7 6.4153 0.9578 2.0634 9 6 7.7308 0.8528 1.7896 10 8 8.1109 0.8208 0.6350 11 6 8.7086 0.7756 2.8896 12 6 8.4198 0.8059 4.2726 13 7 9.5467 0.7103 4.9225 14 7 10.5960 0.6261 4.0006 15 6 12.0188 0.5130 4.3310 16 6 12.6195 1.8906 4.4433 17 1 12.0031 2.7630 4.2840 18 6 13.9561 2.0371 4.7484 19 7 14.4804 3.2392 4.8459 20 14 15.0222 0.5280 5.0232 21 1 15.6190 0.1017 3.7319 22 1 16.1052 0.8555 5.9848 23 1 14.1898 -0.5730 5.5712 24 6 10.0791 0.6664 2.7620 25 6 10.8526 0.6044 1.4702 26 7 4.1871 1.1334 1.1250 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.6885 1.8464 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 6.1122 0.9829 2.9845 33 1 7.4377 0.8898 4.7140 34 1 12.1308 -0.0107 5.2803 35 1 12.5309 -0.0438 3.5463 36 1 15.4206 3.3423 5.0609 37 1 11.1202 1.6139 1.1582 38 1 11.7591 0.0173 1.6172 39 1 10.2379 0.1373 0.7008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361395245.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:45 Heat of formation + Delta-G solvation = 57.530370 kcal Electronic energy + Delta-G solvation = -25317.483805 eV Core-core repulsion = 21389.592729 eV Total energy + Delta-G solvation = -3927.891075 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.32013 -40.56750 -39.56100 -37.94314 -35.42682 -34.07569 -32.41569 -32.01021 -31.43289 -29.31789 -28.30573 -27.13610 -26.39340 -24.69815 -23.13181 -22.52141 -21.19521 -20.37163 -19.22518 -18.69583 -17.54619 -17.35782 -17.25918 -17.01143 -15.91567 -15.85876 -15.83272 -15.47128 -14.97814 -14.68099 -14.48711 -14.11627 -13.60888 -13.44609 -12.96514 -12.82086 -12.69427 -12.48176 -12.30576 -12.05183 -11.94004 -11.85502 -11.71909 -11.55607 -11.36012 -10.94413 -10.63032 -10.46699 -10.13658 -10.08125 -9.89969 -9.81027 -9.80041 -8.95503 -8.94258 -8.88676 -8.29084 -6.42163 -4.48305 0.28690 0.79985 1.59497 1.65105 2.14728 2.30695 2.47031 2.95745 3.05118 3.10731 3.16818 3.38641 3.57000 4.07123 4.08638 4.62515 4.71815 4.85525 4.86324 4.88431 5.00724 5.01988 5.08159 5.24532 5.31387 5.38466 5.43772 5.54529 5.78987 5.87524 6.06486 6.21774 6.30355 6.38742 6.66288 6.67608 6.80041 7.05828 7.29567 7.44913 7.72312 8.00921 8.08846 8.59588 9.10772 10.69759 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.032765 B = 0.002141 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.372523 B =13073.610736 C =13459.798683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.383 6.383 3 C 0.154 3.846 4 C 0.287 3.713 5 N -0.504 5.504 6 S 0.336 5.664 7 C 0.293 3.707 8 N -0.608 5.608 9 C 0.606 3.394 10 O -0.511 6.511 11 C -0.333 4.333 12 C 0.068 3.932 13 N -0.283 5.283 14 N -0.308 5.308 15 C 0.223 3.777 16 C -0.549 4.549 17 H 0.082 0.918 18 C 0.083 3.917 19 N -0.880 5.880 20 Si 0.872 3.128 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.263 1.263 24 C 0.185 3.815 25 C -0.100 4.100 26 N -0.548 5.548 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.427 0.573 33 H 0.183 0.817 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.271 0.729 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.834 -5.777 -8.118 23.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C 0.072 3.928 4 C -0.004 4.004 5 N -0.340 5.340 6 S 0.474 5.526 7 C -0.083 4.083 8 N -0.258 5.258 9 C 0.398 3.602 10 O -0.385 6.385 11 C -0.349 4.349 12 C -0.120 4.120 13 N -0.102 5.102 14 N -0.083 5.083 15 C 0.105 3.895 16 C -0.587 4.587 17 H 0.100 0.900 18 C -0.123 4.123 19 N -0.516 5.516 20 Si 0.698 3.302 21 H -0.194 1.194 22 H -0.203 1.203 23 H -0.188 1.188 24 C 0.047 3.953 25 C -0.157 4.157 26 N -0.281 5.281 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.266 0.734 33 H 0.200 0.800 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.149 -5.957 -8.775 21.890 hybrid contribution -0.585 -0.214 1.068 1.237 sum -19.735 -6.171 -7.706 22.067 Atomic orbital electron populations 1.22786 0.80003 1.03215 1.00309 1.87939 1.20262 1.26386 1.95524 1.20705 0.83569 0.85970 1.02519 1.22459 0.98080 0.97374 0.82478 1.77304 1.02388 1.27832 1.26473 1.85855 1.07008 1.64383 0.95399 1.25000 0.90064 0.96045 0.97207 1.42648 1.04581 1.70311 1.08263 1.17620 0.79498 0.74178 0.88861 1.90723 1.77457 1.49233 1.21091 1.19125 0.91895 1.31378 0.92476 1.23844 0.97972 0.99298 0.90911 1.77227 0.93923 1.22702 1.16356 1.49024 1.08413 1.48639 1.02245 1.20252 0.70651 1.00252 0.98374 1.21042 0.95625 0.90528 1.51540 0.89954 1.24784 0.97326 0.96229 0.93926 1.69851 1.13894 1.21644 1.46174 0.86912 0.81045 0.83078 0.79185 1.19429 1.20272 1.18772 1.21499 0.91986 0.92580 0.89234 1.20686 0.99399 1.04583 0.91081 1.67252 1.03196 1.26877 1.30725 0.93608 0.93684 0.89243 0.90146 0.90300 0.73376 0.80033 0.92434 0.93149 0.91838 0.88897 0.90569 0.88463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -4.08 10.69 -35.23 -0.38 -4.46 16 3 C 0.15 1.49 6.47 36.01 0.23 1.73 16 4 C 0.29 3.72 7.19 -159.05 -1.14 2.58 16 5 N -0.50 -7.00 12.15 29.54 0.36 -6.64 16 6 S 0.34 4.56 21.16 -107.50 -2.28 2.29 16 7 C 0.29 3.87 8.50 -86.04 -0.73 3.14 16 8 N -0.61 -7.19 5.38 -13.41 -0.07 -7.26 16 9 C 0.61 8.52 7.77 -12.54 -0.10 8.42 16 10 O -0.51 -7.93 12.58 5.28 0.07 -7.87 16 11 C -0.33 -5.14 6.13 -105.07 -0.64 -5.78 16 12 C 0.07 1.01 11.50 -16.98 -0.20 0.81 16 13 N -0.28 -5.39 12.50 30.86 0.39 -5.00 16 14 N -0.31 -6.13 3.56 -57.76 -0.21 -6.34 16 15 C 0.22 4.80 5.03 -5.19 -0.03 4.77 16 16 C -0.55 -14.21 9.94 -34.44 -0.34 -14.55 16 17 H 0.08 2.42 8.06 -52.48 -0.42 1.99 16 18 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 19 N -0.88 -24.82 13.96 55.43 0.77 -24.05 16 20 Si 0.87 18.84 27.47 -169.99 -4.67 14.18 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 23 H -0.26 -5.39 6.54 56.52 0.37 -5.02 16 24 C 0.19 3.24 7.01 -81.59 -0.57 2.67 16 25 C -0.10 -1.51 9.57 36.01 0.34 -1.16 16 26 N -0.55 -7.29 10.60 -14.49 -0.15 -7.44 16 27 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.43 3.87 7.77 -40.82 -0.32 3.55 16 33 H 0.18 1.78 7.50 -52.49 -0.39 1.39 16 34 H 0.06 1.25 7.20 -51.93 -0.37 0.87 16 35 H 0.05 0.99 6.44 -51.93 -0.33 0.65 16 36 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.08 1.08 7.05 -51.93 -0.37 0.72 16 39 H 0.10 1.35 6.50 -51.93 -0.34 1.01 16 LS Contribution 354.10 15.07 5.34 5.34 Total: -1.00 -31.87 354.10 -7.24 -39.11 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -4.25 Total: 2.13 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -2.16 Total: 6.02 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: 1.09 Total: -56.73 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -0.31 Total: -12.33 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -4.67 Total: 14.18 kcal Atomic # 16 Polarization: 4.56 SS G_CDS: -2.28 Total: 2.29 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.87 -7.24 -39.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361395245.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.639 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds