Wall clock time and date at job start Tue Mar 31 2020 19:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42907 * 113.99712 * 2 1 4 4 C 1.50703 * 109.46959 * 179.97438 * 3 2 1 5 5 N 1.30164 * 121.06142 * 89.97911 * 4 3 2 6 6 S 1.69958 * 105.74603 * 180.02562 * 5 4 3 7 7 C 1.72304 * 94.56191 * 359.97438 * 6 5 4 8 8 N 1.38700 * 127.50287 * 180.02562 * 7 6 5 9 9 C 1.34781 * 119.99666 * 359.97438 * 8 7 6 10 10 O 1.21595 * 120.00273 * 359.97438 * 9 8 7 11 11 C 1.47383 * 119.99807 * 180.02562 * 9 8 7 12 12 C 1.41310 * 126.42059 * 359.68056 * 11 9 8 13 13 N 1.30441 * 108.02345 * 179.81969 * 12 11 9 14 14 N 1.39929 * 108.90462 * 0.45059 * 13 12 11 15 15 C 1.46506 * 125.75211 * 179.70732 * 14 13 12 16 16 C 1.50698 * 109.47298 * 270.00227 * 15 14 13 17 17 H 1.08003 * 119.99907 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00120 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00195 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99790 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47112 * 90.00283 * 20 18 16 22 22 H 1.48494 * 109.47187 * 210.00049 * 20 18 16 23 23 H 1.48506 * 109.47183 * 330.00378 * 20 18 16 24 24 C 1.34265 * 108.49746 * 359.71078 * 14 13 12 25 25 C 1.50700 * 126.29526 * 179.97438 * 24 14 13 26 26 N 1.31235 * 121.06747 * 269.99447 * 4 3 2 27 27 H 1.08998 * 109.47336 * 299.99602 * 1 2 3 28 28 H 1.08995 * 109.47438 * 60.00193 * 1 2 3 29 29 H 1.09003 * 109.47244 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47051 * 60.00185 * 3 2 1 31 31 H 1.08998 * 109.47013 * 299.99743 * 3 2 1 32 32 H 0.96998 * 120.00511 * 179.97438 * 8 7 6 33 33 H 1.08001 * 125.98404 * 0.02562 * 12 11 9 34 34 H 1.08998 * 109.47135 * 30.00385 * 15 14 13 35 35 H 1.09000 * 109.46718 * 149.99842 * 15 14 13 36 36 H 0.96995 * 120.00288 * 179.97438 * 19 18 16 37 37 H 1.08997 * 109.46786 * 270.00171 * 25 24 14 38 38 H 1.09006 * 109.47160 * 29.99302 * 25 24 14 39 39 H 1.08991 * 109.47193 * 149.99857 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 7 4.1823 1.1330 -1.1141 6 16 5.8162 1.0031 -0.6645 7 6 5.4951 1.0299 1.0282 8 7 6.4153 0.9578 2.0634 9 6 7.7308 0.8528 1.7896 10 8 8.1109 0.8208 0.6350 11 6 8.7086 0.7756 2.8896 12 6 8.4198 0.8059 4.2726 13 7 9.5467 0.7103 4.9225 14 7 10.5960 0.6261 4.0006 15 6 12.0188 0.5130 4.3310 16 6 12.6195 1.8906 4.4433 17 1 12.0031 2.7630 4.2840 18 6 13.9561 2.0371 4.7484 19 7 14.4804 3.2392 4.8459 20 14 15.0222 0.5280 5.0232 21 1 15.6190 0.1017 3.7319 22 1 16.1052 0.8555 5.9848 23 1 14.1898 -0.5730 5.5712 24 6 10.0791 0.6664 2.7620 25 6 10.8526 0.6044 1.4702 26 7 4.1871 1.1334 1.1250 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.6885 1.8464 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 6.1122 0.9829 2.9845 33 1 7.4377 0.8898 4.7140 34 1 12.1308 -0.0107 5.2803 35 1 12.5309 -0.0438 3.5463 36 1 15.4206 3.3423 5.0609 37 1 11.1202 1.6139 1.1582 38 1 11.7591 0.0173 1.6172 39 1 10.2379 0.1373 0.7008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361395245.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:44 Heat of formation + Delta-G solvation = 34.387897 kcal Electronic energy + Delta-G solvation = -25318.487338 eV Core-core repulsion = 21389.592729 eV Total energy + Delta-G solvation = -3928.894608 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.59421 -41.60666 -40.69399 -38.65205 -36.51638 -35.77757 -34.05784 -33.15947 -32.73225 -30.12275 -29.82858 -28.46059 -27.02726 -25.83024 -24.73677 -23.66265 -22.30173 -21.54233 -20.51646 -19.79090 -19.28781 -18.60147 -18.47149 -17.75511 -16.98322 -16.93169 -16.59958 -16.47162 -16.41324 -15.93478 -15.88573 -15.35804 -15.04880 -14.49598 -14.30098 -14.14741 -13.83604 -13.71942 -13.39273 -13.20096 -13.13284 -12.89321 -12.84657 -12.74204 -12.56383 -12.27319 -12.16901 -11.86624 -11.84679 -11.28963 -10.91126 -10.90329 -10.84270 -10.71381 -10.35346 -10.03348 -9.58453 -8.42344 -6.54668 -0.75980 -0.22710 0.41628 0.60310 1.03701 1.17010 1.34602 1.35699 1.37847 1.46501 1.67391 2.21510 2.25249 2.75946 2.90314 3.29254 3.51741 3.61209 3.83571 3.98933 4.09824 4.16352 4.36797 4.41324 4.44931 4.48791 4.56533 4.62895 4.67665 4.71050 4.79440 4.90886 5.04276 5.09205 5.17512 5.47501 5.75533 5.78106 6.08721 6.16045 6.43593 6.48789 6.60735 6.70602 7.09381 8.73720 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.032765 B = 0.002141 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.372523 B =13073.610736 C =13459.798683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.413 6.413 3 C 0.153 3.847 4 C 0.281 3.719 5 N -0.517 5.517 6 S 0.320 5.680 7 C 0.291 3.709 8 N -0.593 5.593 9 C 0.614 3.386 10 O -0.524 6.524 11 C -0.329 4.329 12 C 0.088 3.912 13 N -0.327 5.327 14 N -0.334 5.334 15 C 0.231 3.769 16 C -0.553 4.553 17 H 0.029 0.971 18 C 0.024 3.976 19 N -0.934 5.934 20 Si 0.947 3.053 21 H -0.252 1.252 22 H -0.281 1.281 23 H -0.241 1.241 24 C 0.169 3.831 25 C -0.097 4.097 26 N -0.549 5.549 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.441 0.559 33 H 0.232 0.768 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.274 0.726 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.510 -7.532 -8.192 25.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C 0.072 3.928 4 C -0.010 4.010 5 N -0.353 5.353 6 S 0.457 5.543 7 C -0.085 4.085 8 N -0.244 5.244 9 C 0.405 3.595 10 O -0.399 6.399 11 C -0.344 4.344 12 C -0.100 4.100 13 N -0.145 5.145 14 N -0.109 5.109 15 C 0.112 3.888 16 C -0.591 4.591 17 H 0.047 0.953 18 C -0.177 4.177 19 N -0.572 5.572 20 Si 0.768 3.232 21 H -0.176 1.176 22 H -0.206 1.206 23 H -0.164 1.164 24 C 0.032 3.968 25 C -0.155 4.155 26 N -0.282 5.282 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.283 0.717 33 H 0.248 0.752 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -20.886 -7.719 -8.854 23.963 hybrid contribution -0.294 0.422 1.038 1.158 sum -21.180 -7.297 -7.816 23.726 Atomic orbital electron populations 1.23005 0.77871 1.04246 1.01696 1.87884 1.22611 1.26891 1.95808 1.20899 0.81511 0.86141 1.04262 1.23142 0.99622 0.96205 0.82052 1.77344 1.02283 1.28647 1.27028 1.85878 1.07511 1.64858 0.96064 1.25076 0.90290 0.96019 0.97152 1.42381 1.03630 1.69523 1.08821 1.17348 0.79949 0.74028 0.88151 1.90728 1.77941 1.49709 1.21542 1.19254 0.91469 1.30444 0.93251 1.24630 0.98788 0.96102 0.90451 1.77178 0.94897 1.25007 1.17468 1.48835 1.08010 1.50905 1.03173 1.19971 0.72110 0.97480 0.99243 1.21166 0.95479 0.91279 1.51165 0.95284 1.25793 0.98848 0.99729 0.93290 1.70017 1.14511 1.24613 1.48057 0.85739 0.78735 0.79021 0.79737 1.17629 1.20621 1.16405 1.21995 0.93216 0.92383 0.89158 1.20729 0.99874 1.04346 0.90510 1.67328 1.03011 1.26902 1.30911 0.92166 0.92322 0.88480 0.88259 0.88663 0.71667 0.75207 0.92343 0.90694 0.91697 0.89713 0.89718 0.87177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -8.04 10.69 -148.98 -1.59 -9.64 16 3 C 0.15 2.65 6.47 71.24 0.46 3.11 16 4 C 0.28 6.85 7.19 139.40 1.00 7.85 16 5 N -0.52 -13.84 12.15 -60.45 -0.73 -14.57 16 6 S 0.32 8.41 21.16 -56.49 -1.20 7.21 16 7 C 0.29 7.20 8.50 178.75 1.52 8.72 16 8 N -0.59 -12.68 5.38 -314.59 -1.69 -14.38 16 9 C 0.61 16.18 7.77 86.65 0.67 16.86 16 10 O -0.52 -15.64 12.58 -4.01 -0.05 -15.69 16 11 C -0.33 -9.64 6.13 -20.15 -0.12 -9.76 16 12 C 0.09 2.43 11.50 85.65 0.99 3.41 16 13 N -0.33 -12.19 12.50 -56.26 -0.70 -12.89 16 14 N -0.33 -13.21 3.56 -336.66 -1.20 -14.41 16 15 C 0.23 9.87 5.03 85.63 0.43 10.30 16 16 C -0.55 -29.44 9.94 25.60 0.25 -29.19 16 17 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 18 C 0.02 1.27 5.47 84.65 0.46 1.73 16 19 N -0.93 -54.54 13.96 21.45 0.30 -54.24 16 20 Si 0.95 38.42 27.47 68.60 1.88 40.30 16 21 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 22 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.24 -8.84 6.54 99.48 0.65 -8.19 16 24 C 0.17 5.82 7.01 42.15 0.30 6.12 16 25 C -0.10 -2.88 9.57 71.24 0.68 -2.19 16 26 N -0.55 -13.59 10.60 -199.76 -2.12 -15.71 16 27 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.10 0.81 8.14 -2.39 -0.02 0.80 16 30 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.10 1.29 8.14 -2.39 -0.02 1.28 16 32 H 0.44 6.66 7.77 -92.71 -0.72 5.94 16 33 H 0.23 3.64 7.50 -2.91 -0.02 3.61 16 34 H 0.06 2.47 7.20 -2.39 -0.02 2.45 16 35 H 0.08 2.81 6.44 -2.39 -0.02 2.79 16 36 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 37 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.08 2.33 7.05 -2.38 -0.02 2.31 16 39 H 0.11 2.95 6.50 -2.39 -0.02 2.93 16 Total: -1.00 -71.79 354.10 1.14 -70.65 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.35 Total: 14.88 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: 7.89 Total: 18.49 kcal Atomic # 7 Polarization: -120.05 SS G_CDS: -6.15 Total: -126.20 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -1.64 Total: -25.33 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 1.88 Total: 40.30 kcal Atomic # 16 Polarization: 8.41 SS G_CDS: -1.20 Total: 7.21 kcal Total: -71.79 1.14 -70.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361395245.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.042 kcal (2) G-P(sol) polarization free energy of solvation -71.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds