Wall clock time and date at job start Tue Mar 31 2020 20:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46494 * 120.00000 * 2 1 4 4 C 1.50704 * 109.47104 * 90.00861 * 3 2 1 5 5 H 1.08001 * 119.99699 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00394 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00440 * 179.97438 * 6 4 3 8 8 Si 1.86808 * 119.99706 * 359.97438 * 6 4 3 9 9 H 1.48490 * 109.47224 * 90.00265 * 8 6 4 10 10 H 1.48503 * 109.46983 * 210.00426 * 8 6 4 11 11 H 1.48501 * 109.46896 * 329.99663 * 8 6 4 12 12 C 1.34771 * 119.99402 * 180.02562 * 2 1 3 13 13 O 1.21601 * 119.99751 * 185.40895 * 12 2 1 14 14 C 1.47451 * 120.00393 * 5.40210 * 12 2 1 15 15 N 1.32033 * 126.44651 * 5.91292 * 14 12 2 16 16 N 1.28460 * 110.20736 * 180.02562 * 15 14 12 17 17 C 1.40191 * 124.92659 * 180.02562 * 16 15 14 18 18 C 1.38828 * 120.05646 * 359.97438 * 17 16 15 19 19 C 1.38094 * 119.98200 * 179.97438 * 18 17 16 20 20 C 1.38521 * 120.08748 * 359.97408 * 19 18 17 21 21 F 1.35104 * 119.94426 * 180.02562 * 20 19 18 22 22 C 1.38443 * 120.11260 * 0.04609 * 20 19 18 23 23 C 1.38312 * 120.01900 * 359.69960 * 22 20 19 24 24 F 1.35105 * 120.05043 * 180.29632 * 23 22 20 25 25 C 1.36079 * 110.14020 * 0.02562 * 16 15 14 26 26 C 1.35772 * 107.06851 * 359.72692 * 25 16 15 27 27 O 1.36079 * 127.26417 * 180.27624 * 26 25 16 28 28 H 1.09002 * 109.47645 * 95.37292 * 1 2 3 29 29 H 1.09001 * 109.47499 * 215.38287 * 1 2 3 30 30 H 1.09011 * 109.46574 * 335.37975 * 1 2 3 31 31 H 1.09000 * 109.46993 * 209.99983 * 3 2 1 32 32 H 1.09000 * 109.47496 * 330.00610 * 3 2 1 33 33 H 0.97005 * 120.00108 * 180.02562 * 7 6 4 34 34 H 1.08001 * 120.00527 * 359.95511 * 18 17 16 35 35 H 1.07994 * 119.95537 * 180.02562 * 19 18 17 36 36 H 1.07996 * 119.99262 * 179.97438 * 22 20 19 37 37 H 1.08003 * 126.46147 * 180.02562 * 25 16 15 38 38 H 0.96701 * 113.99354 * 270.16772 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4489 1.7036 1.4209 5 1 2.0977 1.0959 2.2417 6 6 3.1271 2.8772 1.6729 7 7 3.3460 3.2570 2.9128 8 14 3.7352 3.9279 0.2530 9 1 2.6842 4.9070 -0.1238 10 1 4.9633 4.6540 0.6650 11 1 4.0415 3.0579 -0.9108 12 6 2.1388 -1.1672 -0.0005 13 8 3.3507 -1.1697 0.0987 14 6 1.4064 -2.4413 -0.1213 15 7 0.1129 -2.5844 -0.3440 16 7 -0.1941 -3.8309 -0.3909 17 6 -1.4846 -4.3319 -0.6118 18 6 -2.5470 -3.4582 -0.7996 19 6 -3.8175 -3.9534 -1.0176 20 6 -4.0336 -5.3213 -1.0498 21 9 -5.2777 -5.8027 -1.2639 22 6 -2.9770 -6.1960 -0.8626 23 6 -1.7017 -5.7050 -0.6492 24 9 -0.6691 -6.5580 -0.4724 25 6 0.9152 -4.5943 -0.1950 26 6 1.9595 -3.7435 -0.0247 27 8 3.2619 -4.0711 0.1948 28 1 -0.3634 -0.0962 -1.0231 29 1 -0.3634 -0.8378 0.5950 30 1 -0.3633 0.9344 0.4282 31 1 3.1499 1.1383 -0.5138 32 1 1.6084 2.0284 -0.5137 33 1 3.8229 4.0829 3.0901 34 1 -2.3799 -2.3915 -0.7748 35 1 -4.6436 -3.2734 -1.1640 36 1 -3.1477 -7.2621 -0.8877 37 1 0.9578 -5.6734 -0.1827 38 1 3.4919 -4.1638 1.1295 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361972956.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:49 Heat of formation + Delta-G solvation = -22.191284 kcal Electronic energy + Delta-G solvation = -28423.568957 eV Core-core repulsion = 23906.087754 eV Total energy + Delta-G solvation = -4517.481203 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.85651 -49.57091 -43.01289 -39.52700 -38.65617 -37.18283 -34.89004 -33.60524 -32.46769 -31.71137 -30.34962 -29.40980 -28.25406 -26.07506 -24.71424 -23.93294 -22.85916 -21.82732 -21.40597 -19.25528 -18.86511 -18.44033 -17.81053 -17.22989 -16.91540 -16.87159 -16.57945 -16.39369 -16.13490 -15.84505 -15.41924 -15.14830 -14.89523 -14.51546 -14.37430 -14.14375 -13.78649 -13.70988 -13.06899 -12.92793 -12.66593 -12.44822 -12.35186 -12.25163 -12.06538 -11.67244 -11.20286 -10.95139 -10.52189 -10.38323 -10.25394 -10.07152 -9.77237 -9.55085 -9.26897 -9.22232 -8.57435 -8.47863 -7.68051 -6.06664 -4.05462 -0.06455 0.26841 1.63632 1.84644 1.94424 2.74911 3.08919 3.29000 3.37019 3.42133 3.48823 3.63779 3.79021 3.87798 4.04727 4.26562 4.34667 4.41871 4.53408 4.74088 4.93163 5.00995 5.11561 5.19730 5.26584 5.33706 5.39816 5.55078 5.82257 5.92242 6.01249 6.02542 6.29500 6.52394 6.69666 6.96610 7.32769 7.59804 7.62075 7.70104 8.21046 8.47702 8.89520 8.97979 9.53212 11.06726 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.018304 B = 0.002862 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.329219 B = 9780.745462 C =10933.562810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.581 5.581 3 C 0.216 3.784 4 C -0.527 4.527 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.898 5.898 8 Si 0.874 3.126 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.263 1.263 12 C 0.585 3.415 13 O -0.515 6.515 14 C 0.006 3.994 15 N -0.248 5.248 16 N -0.241 5.241 17 C 0.112 3.888 18 C -0.056 4.056 19 C -0.135 4.135 20 C 0.126 3.874 21 F -0.125 7.125 22 C -0.166 4.166 23 C 0.120 3.880 24 F -0.118 7.118 25 C -0.054 4.054 26 C 0.057 3.943 27 O -0.450 6.450 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.029 0.971 33 H 0.265 0.735 34 H 0.166 0.834 35 H 0.157 0.843 36 H 0.161 0.839 37 H 0.202 0.798 38 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.148 -20.246 -8.393 27.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.313 5.313 3 C 0.096 3.904 4 C -0.566 4.566 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.701 3.299 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.188 1.188 12 C 0.369 3.631 13 O -0.389 6.389 14 C -0.157 4.157 15 N -0.081 5.081 16 N -0.024 5.024 17 C 0.019 3.981 18 C -0.075 4.075 19 C -0.155 4.155 20 C 0.105 3.895 21 F -0.104 7.104 22 C -0.186 4.186 23 C 0.098 3.902 24 F -0.096 7.096 25 C -0.193 4.193 26 C 0.002 3.998 27 O -0.256 6.256 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.183 0.817 35 H 0.175 0.825 36 H 0.179 0.821 37 H 0.218 0.782 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -17.318 -19.524 -9.017 27.612 hybrid contribution 0.960 -0.159 0.110 0.979 sum -16.358 -19.683 -8.906 27.099 Atomic orbital electron populations 1.21807 0.80189 1.02824 1.00736 1.47708 1.06837 1.06483 1.70247 1.19746 0.92477 0.79578 0.98584 1.21310 1.36960 1.07175 0.91153 0.90699 1.24848 0.95204 0.97333 0.95591 1.69895 1.41534 1.23511 1.18668 0.86868 0.78923 0.80806 0.83308 1.20081 1.20916 1.18751 1.16718 0.86348 0.81258 0.78790 1.90824 1.12629 1.85821 1.49614 1.23093 0.89504 0.96573 1.06570 1.73968 1.15859 0.98404 1.19865 1.42115 1.05149 1.04232 1.50860 1.17610 0.83077 0.90911 1.06497 1.20814 0.89282 1.01361 0.96076 1.21186 0.98276 0.93719 1.02282 1.17332 0.79789 0.91746 1.00586 1.91571 1.38296 1.88646 1.91857 1.20874 0.89765 1.02219 1.05721 1.16787 0.84948 0.84492 1.03959 1.91451 1.55894 1.69675 1.92598 1.23606 0.85599 1.00021 1.10037 1.18169 0.85574 0.89352 1.06696 1.84891 1.19410 1.90403 1.30881 0.93509 0.91122 0.90835 0.94007 0.95274 0.92560 0.81676 0.82521 0.82146 0.78163 0.75312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.49 9.30 59.85 0.56 2.05 16 2 N -0.58 -12.73 2.86 -184.22 -0.53 -13.26 16 3 C 0.22 5.40 4.16 -5.19 -0.02 5.38 16 4 C -0.53 -15.33 9.94 -34.44 -0.34 -15.68 16 5 H 0.07 2.39 8.06 -52.49 -0.42 1.97 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 8 Si 0.87 21.60 27.47 -169.99 -4.67 16.93 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 12 C 0.59 13.08 7.66 -12.51 -0.10 12.98 16 13 O -0.52 -13.37 16.18 3.38 0.05 -13.32 16 14 C 0.01 0.11 6.76 -82.66 -0.56 -0.45 16 15 N -0.25 -3.73 7.92 33.46 0.26 -3.47 16 16 N -0.24 -3.06 3.52 -10.34 -0.04 -3.10 16 17 C 0.11 1.07 6.67 -83.51 -0.56 0.52 16 18 C -0.06 -0.42 9.59 -39.42 -0.38 -0.80 16 19 C -0.14 -0.76 10.02 -39.53 -0.40 -1.16 16 20 C 0.13 0.77 7.30 -39.40 -0.29 0.48 16 21 F -0.13 -0.84 17.26 2.25 0.04 -0.80 16 22 C -0.17 -1.00 10.00 -39.48 -0.39 -1.39 16 23 C 0.12 0.96 7.22 -39.25 -0.28 0.67 16 24 F -0.12 -0.98 13.82 2.25 0.03 -0.95 16 25 C -0.05 -0.69 10.55 -16.55 -0.17 -0.86 16 26 C 0.06 0.91 7.35 -39.10 -0.29 0.63 16 27 O -0.45 -6.97 13.21 -21.89 -0.29 -7.26 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 1.12 5.95 -51.93 -0.31 0.81 16 30 H 0.07 1.22 8.03 -51.92 -0.42 0.81 16 31 H 0.04 1.12 6.56 -51.93 -0.34 0.78 16 32 H 0.03 0.67 7.50 -51.93 -0.39 0.29 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.17 1.21 7.64 -52.49 -0.40 0.81 16 35 H 0.16 0.52 8.06 -52.49 -0.42 0.10 16 36 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.20 2.01 5.61 -52.48 -0.29 1.71 16 38 H 0.39 4.37 9.07 45.56 0.41 4.79 16 LS Contribution 339.90 15.07 5.12 5.12 Total: -1.00 -36.42 339.90 -5.15 -41.57 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -2.60 Total: 1.17 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -3.32 Total: 4.41 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.48 Total: -46.87 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.23 Total: -20.58 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.07 Total: -1.75 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.42 -5.15 -41.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361972956.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.377 kcal (2) G-P(sol) polarization free energy of solvation -36.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds