Wall clock time and date at job start Tue Mar 31 2020 20:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46494 * 120.00000 * 2 1 4 4 C 1.50704 * 109.47104 * 90.00861 * 3 2 1 5 5 H 1.08001 * 119.99699 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00394 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00440 * 179.97438 * 6 4 3 8 8 Si 1.86808 * 119.99706 * 359.97438 * 6 4 3 9 9 H 1.48490 * 109.47224 * 90.00265 * 8 6 4 10 10 H 1.48503 * 109.46983 * 210.00426 * 8 6 4 11 11 H 1.48501 * 109.46896 * 329.99663 * 8 6 4 12 12 C 1.34771 * 119.99402 * 180.02562 * 2 1 3 13 13 O 1.21601 * 119.99751 * 185.40895 * 12 2 1 14 14 C 1.47451 * 120.00393 * 5.40210 * 12 2 1 15 15 N 1.32033 * 126.44651 * 5.91292 * 14 12 2 16 16 N 1.28460 * 110.20736 * 180.02562 * 15 14 12 17 17 C 1.40191 * 124.92659 * 180.02562 * 16 15 14 18 18 C 1.38828 * 120.05646 * 359.97438 * 17 16 15 19 19 C 1.38094 * 119.98200 * 179.97438 * 18 17 16 20 20 C 1.38521 * 120.08748 * 359.97408 * 19 18 17 21 21 F 1.35104 * 119.94426 * 180.02562 * 20 19 18 22 22 C 1.38443 * 120.11260 * 0.04609 * 20 19 18 23 23 C 1.38312 * 120.01900 * 359.69960 * 22 20 19 24 24 F 1.35105 * 120.05043 * 180.29632 * 23 22 20 25 25 C 1.36079 * 110.14020 * 0.02562 * 16 15 14 26 26 C 1.35772 * 107.06851 * 359.72692 * 25 16 15 27 27 O 1.36079 * 127.26417 * 180.27624 * 26 25 16 28 28 H 1.09002 * 109.47645 * 95.37292 * 1 2 3 29 29 H 1.09001 * 109.47499 * 215.38287 * 1 2 3 30 30 H 1.09011 * 109.46574 * 335.37975 * 1 2 3 31 31 H 1.09000 * 109.46993 * 209.99983 * 3 2 1 32 32 H 1.09000 * 109.47496 * 330.00610 * 3 2 1 33 33 H 0.97005 * 120.00108 * 180.02562 * 7 6 4 34 34 H 1.08001 * 120.00527 * 359.95511 * 18 17 16 35 35 H 1.07994 * 119.95537 * 180.02562 * 19 18 17 36 36 H 1.07996 * 119.99262 * 179.97438 * 22 20 19 37 37 H 1.08003 * 126.46147 * 180.02562 * 25 16 15 38 38 H 0.96701 * 113.99354 * 270.16772 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4489 1.7036 1.4209 5 1 2.0977 1.0959 2.2417 6 6 3.1271 2.8772 1.6729 7 7 3.3460 3.2570 2.9128 8 14 3.7352 3.9279 0.2530 9 1 2.6842 4.9070 -0.1238 10 1 4.9633 4.6540 0.6650 11 1 4.0415 3.0579 -0.9108 12 6 2.1388 -1.1672 -0.0005 13 8 3.3507 -1.1697 0.0987 14 6 1.4064 -2.4413 -0.1213 15 7 0.1129 -2.5844 -0.3440 16 7 -0.1941 -3.8309 -0.3909 17 6 -1.4846 -4.3319 -0.6118 18 6 -2.5470 -3.4582 -0.7996 19 6 -3.8175 -3.9534 -1.0176 20 6 -4.0336 -5.3213 -1.0498 21 9 -5.2777 -5.8027 -1.2639 22 6 -2.9770 -6.1960 -0.8626 23 6 -1.7017 -5.7050 -0.6492 24 9 -0.6691 -6.5580 -0.4724 25 6 0.9152 -4.5943 -0.1950 26 6 1.9595 -3.7435 -0.0247 27 8 3.2619 -4.0711 0.1948 28 1 -0.3634 -0.0962 -1.0231 29 1 -0.3634 -0.8378 0.5950 30 1 -0.3633 0.9344 0.4282 31 1 3.1499 1.1383 -0.5138 32 1 1.6084 2.0284 -0.5137 33 1 3.8229 4.0829 3.0901 34 1 -2.3799 -2.3915 -0.7748 35 1 -4.6436 -3.2734 -1.1640 36 1 -3.1477 -7.2621 -0.8877 37 1 0.9578 -5.6734 -0.1827 38 1 3.4919 -4.1638 1.1295 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361972956.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:49 Heat of formation + Delta-G solvation = -48.664052 kcal Electronic energy + Delta-G solvation = -28424.716902 eV Core-core repulsion = 23906.087754 eV Total energy + Delta-G solvation = -4518.629149 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.48158 -50.09335 -44.11632 -40.60341 -39.90622 -38.32803 -36.67702 -34.87818 -34.31755 -32.32795 -31.45427 -30.73846 -29.73763 -27.56643 -26.03882 -24.60153 -24.25825 -22.78646 -22.74295 -20.58903 -19.66286 -19.40855 -19.14656 -18.64261 -18.07650 -18.05130 -17.65272 -17.19237 -16.96774 -16.84580 -16.48562 -16.32412 -16.08486 -15.64816 -15.59830 -15.28066 -15.05834 -14.83187 -14.35134 -14.27230 -13.91315 -13.84701 -13.62049 -13.39819 -13.30533 -12.99932 -12.68801 -12.49519 -12.26940 -12.02605 -11.76706 -11.62889 -11.20824 -11.00288 -10.81046 -10.31735 -10.26333 -9.55304 -9.29320 -8.33114 -6.38871 -0.77305 -0.24162 0.46785 0.81365 0.94817 1.33868 1.38744 1.49876 2.08397 2.15000 2.29717 2.33029 2.49361 2.77716 3.00603 3.04524 3.33744 3.41646 3.60714 3.69314 3.83338 3.96769 4.25788 4.34354 4.42854 4.56042 4.64390 4.69844 4.72365 4.80338 4.81052 4.89178 4.95517 5.00933 5.35938 5.43720 5.55536 5.65047 6.22038 6.41486 6.58063 6.61763 6.67259 7.15688 7.29367 8.84009 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.018304 B = 0.002862 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.329219 B = 9780.745462 C =10933.562810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.591 5.591 3 C 0.225 3.775 4 C -0.537 4.537 5 H 0.027 0.973 6 C 0.012 3.988 7 N -0.945 5.945 8 Si 0.949 3.051 9 H -0.248 1.248 10 H -0.281 1.281 11 H -0.255 1.255 12 C 0.579 3.421 13 O -0.569 6.569 14 C -0.036 4.036 15 N -0.234 5.234 16 N -0.226 5.226 17 C 0.075 3.925 18 C -0.053 4.053 19 C -0.123 4.123 20 C 0.135 3.865 21 F -0.125 7.125 22 C -0.157 4.157 23 C 0.123 3.877 24 F -0.120 7.120 25 C -0.033 4.033 26 C 0.036 3.964 27 O -0.466 6.466 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.023 0.977 32 H 0.057 0.943 33 H 0.269 0.731 34 H 0.167 0.833 35 H 0.184 0.816 36 H 0.184 0.816 37 H 0.230 0.770 38 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.046 -21.389 -10.490 31.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.322 5.322 3 C 0.103 3.897 4 C -0.575 4.575 5 H 0.045 0.955 6 C -0.186 4.186 7 N -0.585 5.585 8 Si 0.771 3.229 9 H -0.172 1.172 10 H -0.207 1.207 11 H -0.179 1.179 12 C 0.366 3.634 13 O -0.446 6.446 14 C -0.196 4.196 15 N -0.070 5.070 16 N -0.009 5.009 17 C -0.017 4.017 18 C -0.073 4.073 19 C -0.142 4.142 20 C 0.114 3.886 21 F -0.103 7.103 22 C -0.176 4.176 23 C 0.101 3.899 24 F -0.099 7.099 25 C -0.173 4.173 26 C -0.019 4.019 27 O -0.273 6.273 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.185 0.815 35 H 0.201 0.799 36 H 0.202 0.798 37 H 0.247 0.753 38 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -20.289 -20.682 -11.113 31.030 hybrid contribution 1.594 -0.012 0.819 1.792 sum -18.695 -20.694 -10.294 29.727 Atomic orbital electron populations 1.22012 0.77236 1.03270 1.02820 1.47808 1.08733 1.05520 1.70093 1.19461 0.92745 0.81716 0.95781 1.21491 1.37104 1.06859 0.92090 0.95511 1.25854 0.95108 0.98853 0.98760 1.70049 1.42658 1.24458 1.21328 0.85694 0.78890 0.78991 0.79301 1.17220 1.20671 1.17921 1.17252 0.86117 0.82596 0.77467 1.90763 1.14929 1.86915 1.52035 1.22463 0.90870 0.95362 1.10949 1.73822 1.14215 0.99733 1.19220 1.42426 1.06444 1.03479 1.48570 1.17991 0.81983 0.92006 1.09698 1.20928 0.89459 1.01303 0.95565 1.21417 0.98122 0.94032 1.00665 1.17440 0.79702 0.91979 0.99437 1.91588 1.38327 1.88670 1.91703 1.21076 0.88710 1.03501 1.04360 1.16867 0.85502 0.83752 1.03751 1.91432 1.56184 1.69623 1.92620 1.23920 0.84482 1.00760 1.08146 1.18377 0.86272 0.89180 1.08055 1.84832 1.19835 1.90294 1.32385 0.90494 0.90219 0.90788 0.95909 0.92489 0.92178 0.81527 0.79879 0.79827 0.75350 0.73771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.94 9.30 127.77 1.19 4.13 16 2 N -0.59 -26.50 2.86 -855.00 -2.44 -28.94 16 3 C 0.22 11.41 4.16 85.64 0.36 11.77 16 4 C -0.54 -32.48 9.94 25.60 0.25 -32.23 16 5 H 0.03 1.82 8.06 -2.91 -0.02 1.79 16 6 C 0.01 0.74 5.47 84.65 0.46 1.20 16 7 N -0.94 -60.44 13.96 21.44 0.30 -60.14 16 8 Si 0.95 44.82 27.47 68.60 1.88 46.70 16 9 H -0.25 -10.63 7.11 99.48 0.71 -9.92 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.26 -11.66 6.54 99.48 0.65 -11.01 16 12 C 0.58 27.05 7.66 86.67 0.66 27.71 16 13 O -0.57 -31.32 16.18 -2.22 -0.04 -31.35 16 14 C -0.04 -1.34 6.76 42.43 0.29 -1.05 16 15 N -0.23 -6.90 7.92 -48.06 -0.38 -7.28 16 16 N -0.23 -5.41 3.52 -186.64 -0.66 -6.07 16 17 C 0.07 1.25 6.67 38.14 0.25 1.50 16 18 C -0.05 -0.65 9.59 22.38 0.21 -0.43 16 19 C -0.12 -0.92 10.02 22.30 0.22 -0.69 16 20 C 0.13 1.12 7.30 22.39 0.16 1.28 16 21 F -0.12 -1.19 17.26 44.97 0.78 -0.41 16 22 C -0.16 -1.30 10.00 22.34 0.22 -1.08 16 23 C 0.12 1.59 7.22 22.49 0.16 1.76 16 24 F -0.12 -1.66 13.82 44.97 0.62 -1.04 16 25 C -0.03 -0.81 10.55 83.46 0.88 0.07 16 26 C 0.04 1.18 7.35 22.58 0.17 1.35 16 27 O -0.47 -14.99 13.21 -92.63 -1.22 -16.21 16 28 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.08 2.48 5.95 -2.39 -0.01 2.47 16 30 H 0.07 2.42 8.03 -2.38 -0.02 2.40 16 31 H 0.02 1.25 6.56 -2.39 -0.02 1.23 16 32 H 0.06 2.57 7.50 -2.39 -0.02 2.55 16 33 H 0.27 15.93 8.31 -92.70 -0.77 15.16 16 34 H 0.17 2.00 7.64 -2.91 -0.02 1.98 16 35 H 0.18 0.40 8.06 -2.91 -0.02 0.37 16 36 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 37 H 0.23 4.09 5.61 -2.91 -0.02 4.08 16 38 H 0.40 9.68 9.07 -74.06 -0.67 9.01 16 Total: -1.00 -83.80 339.90 4.77 -79.04 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.43 Total: 10.41 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 5.50 Total: 15.29 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -3.18 Total: -102.43 kcal Atomic # 8 Polarization: -46.31 SS G_CDS: -1.26 Total: -47.57 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 1.40 Total: -1.45 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Total: -83.80 4.77 -79.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361972956.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.372 kcal (2) G-P(sol) polarization free energy of solvation -83.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds