Wall clock time and date at job start Tue Mar 31 2020 19:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40424 * 107.86568 * 179.84878 * 3 2 1 5 5 N 1.40091 * 125.97363 * 180.16817 * 4 3 2 6 6 C 1.34776 * 120.00325 * 0.32152 * 5 4 3 7 7 O 1.21601 * 119.99749 * 359.97438 * 6 5 4 8 8 C 1.47518 * 120.00092 * 180.02562 * 6 5 4 9 9 C 1.39772 * 120.16829 * 359.97438 * 8 6 5 10 10 C 1.37969 * 119.91841 * 180.02562 * 9 8 6 11 11 F 1.35101 * 119.86348 * 180.02562 * 10 9 8 12 12 C 1.38733 * 120.26781 * 0.02562 * 10 9 8 13 13 C 1.38209 * 120.34277 * 359.97438 * 12 10 9 14 14 F 1.35104 * 119.95873 * 179.97438 * 13 12 10 15 15 C 1.38889 * 120.07463 * 359.67900 * 13 12 10 16 16 O 1.35762 * 120.13702 * 180.30325 * 15 13 12 17 17 N 1.31229 * 108.04913 * 0.41799 * 4 3 2 18 18 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 19 19 C 1.46503 * 125.97339 * 359.97438 * 18 2 1 20 20 C 1.50699 * 109.46808 * 90.00128 * 19 18 2 21 21 H 1.07995 * 120.00443 * 359.97438 * 20 19 18 22 22 C 1.37881 * 119.99491 * 179.97438 * 20 19 18 23 23 N 1.31507 * 120.00456 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99592 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47333 * 90.00493 * 24 22 20 26 26 H 1.48506 * 109.46947 * 210.00154 * 24 22 20 27 27 H 1.48498 * 109.47466 * 329.99978 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 31 31 H 1.08001 * 126.06816 * 359.96971 * 3 2 1 32 32 H 0.97010 * 120.00037 * 180.32420 * 5 4 3 33 33 H 1.08003 * 120.04517 * 359.97438 * 9 8 6 34 34 H 1.07996 * 119.82587 * 179.97438 * 12 10 9 35 35 H 0.96699 * 113.99668 * 270.32238 * 16 15 13 36 36 H 1.08997 * 109.46890 * 209.99586 * 19 18 2 37 37 H 1.08999 * 109.46830 * 329.99997 * 19 18 2 38 38 H 0.96999 * 120.00499 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0035 5 7 4.7730 1.4744 0.0080 6 6 4.6363 2.8152 0.0158 7 8 3.5270 3.3132 0.0185 8 6 5.8324 3.6786 0.0199 9 6 7.1092 3.1099 0.0163 10 6 8.2244 3.9223 0.0208 11 9 9.4580 3.3714 0.0168 12 6 8.0841 5.3025 0.0293 13 6 6.8268 5.8764 0.0330 14 9 6.6992 7.2214 0.0418 15 6 5.6945 5.0722 0.0213 16 8 4.4589 5.6347 0.0186 17 7 3.6337 -0.6578 -0.0035 18 7 2.3016 -1.0910 -0.0059 19 6 1.8499 -2.4846 -0.0129 20 6 1.6945 -2.9551 -1.4362 21 1 1.9102 -2.2832 -2.2537 22 6 1.2769 -4.2435 -1.6946 23 7 1.0138 -5.0616 -0.6992 24 14 1.0837 -4.8265 -3.4588 25 1 2.3644 -5.4121 -3.9297 26 1 0.0148 -5.8552 -3.5258 27 1 0.7180 -3.6757 -4.3232 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 1.9719 2.1210 -0.0005 32 1 5.6581 1.0772 0.0055 33 1 7.2228 2.0359 0.0109 34 1 8.9619 5.9316 0.0332 35 1 4.0984 5.7960 0.9013 36 1 2.5847 -3.1073 0.4973 37 1 0.8914 -2.5584 0.5009 38 1 0.7203 -5.9681 -0.8809 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362269041.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:03 Heat of formation + Delta-G solvation = -54.705146 kcal Electronic energy + Delta-G solvation = -27730.600481 eV Core-core repulsion = 23211.709371 eV Total energy + Delta-G solvation = -4518.891110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.49680 -49.47470 -41.09027 -40.27468 -38.58690 -37.09832 -34.97913 -33.48797 -32.11409 -31.27203 -30.71623 -29.85349 -26.86397 -26.41691 -25.14229 -23.43066 -22.92062 -21.69167 -19.97853 -19.78111 -18.97345 -18.35724 -17.92524 -16.79205 -16.74052 -16.52101 -16.46119 -16.06220 -15.90179 -15.58346 -15.32729 -15.20693 -14.87127 -14.55837 -14.24456 -14.08173 -13.85948 -13.18553 -13.04957 -12.66571 -12.51659 -12.40230 -12.31005 -12.07825 -11.75112 -11.45986 -11.29287 -11.10808 -10.87048 -10.53206 -10.28732 -10.06993 -9.74303 -9.72351 -9.58432 -9.11888 -8.67796 -8.02577 -7.54692 -6.29103 -4.36993 -0.06276 0.27909 2.10438 2.47542 2.66960 3.01288 3.18928 3.19834 3.26231 3.30939 3.48342 3.66037 3.69745 3.79437 4.05067 4.20246 4.27819 4.40538 4.86121 4.98338 5.04766 5.17266 5.24654 5.29579 5.41197 5.63768 5.87020 5.97231 6.05549 6.13449 6.41341 6.44800 6.63130 6.87671 7.00121 7.17358 7.30835 7.51667 7.63469 7.84544 7.97900 8.03304 8.56024 8.70690 9.29746 10.78220 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.018586 B = 0.002432 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.160036 B =11510.939861 C =12378.456684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.093 3.907 3 C -0.288 4.288 4 C 0.261 3.739 5 N -0.623 5.623 6 C 0.564 3.436 7 O -0.486 6.486 8 C -0.100 4.100 9 C -0.116 4.116 10 C 0.119 3.881 11 F -0.124 7.124 12 C -0.153 4.153 13 C 0.098 3.902 14 F -0.119 7.119 15 C 0.132 3.868 16 O -0.460 6.460 17 N -0.317 5.317 18 N -0.314 5.314 19 C 0.258 3.742 20 C -0.538 4.538 21 H 0.065 0.935 22 C 0.066 3.934 23 N -0.891 5.891 24 Si 0.906 3.094 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.271 1.271 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.161 0.839 32 H 0.409 0.591 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.401 0.599 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.373 20.015 4.650 23.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.038 4.038 3 C -0.319 4.319 4 C 0.009 3.991 5 N -0.271 5.271 6 C 0.349 3.651 7 O -0.359 6.359 8 C -0.104 4.104 9 C -0.136 4.136 10 C 0.099 3.901 11 F -0.102 7.102 12 C -0.173 4.173 13 C 0.077 3.923 14 F -0.097 7.097 15 C 0.084 3.916 16 O -0.271 6.271 17 N -0.148 5.148 18 N -0.097 5.097 19 C 0.140 3.860 20 C -0.576 4.576 21 H 0.083 0.917 22 C -0.137 4.137 23 N -0.529 5.529 24 Si 0.733 3.267 25 H -0.203 1.203 26 H -0.209 1.209 27 H -0.196 1.196 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.178 0.822 32 H 0.246 0.754 33 H 0.171 0.829 34 H 0.176 0.824 35 H 0.260 0.740 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.262 19.021 4.101 22.482 hybrid contribution 0.272 0.120 -0.485 0.569 sum 11.533 19.141 3.616 22.638 Atomic orbital electron populations 1.20392 0.87800 1.03982 1.02597 1.21080 0.94994 0.87059 1.00682 1.21249 0.89582 0.99903 1.21177 1.18881 0.86902 0.89602 1.03737 1.42254 1.07880 1.04728 1.72239 1.17571 0.88373 0.81083 0.78041 1.90794 1.25132 1.73579 1.46389 1.19925 0.93194 0.92804 1.04501 1.21361 0.90126 1.01523 1.00608 1.16984 0.80241 0.90310 1.02546 1.91584 1.39379 1.85588 1.93671 1.21155 0.97811 0.94393 1.03947 1.17510 0.92695 0.77915 1.04147 1.91569 1.96576 1.27917 1.93637 1.18319 0.85325 0.88888 0.99106 1.84852 1.27171 1.81227 1.33876 1.77262 1.00111 1.08321 1.29079 1.49035 1.00868 1.07895 1.51872 1.19718 0.96032 0.71206 0.99004 1.21319 1.46965 0.98012 0.91320 0.91706 1.24926 0.94606 0.96032 0.98169 1.69912 1.44835 1.06975 1.31184 0.86354 0.78044 0.78594 0.83703 1.20323 1.20851 1.19615 0.91009 0.89841 0.90528 0.82205 0.75431 0.82866 0.82394 0.73974 0.92943 0.92694 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.48 9.89 36.01 0.36 -1.12 16 2 C 0.09 1.90 6.92 -82.28 -0.57 1.33 16 3 C -0.29 -5.68 9.52 -39.83 -0.38 -6.06 16 4 C 0.26 5.08 8.11 -154.44 -1.25 3.83 16 5 N -0.62 -9.10 5.40 -12.08 -0.07 -9.17 16 6 C 0.56 7.73 7.73 -12.48 -0.10 7.63 16 7 O -0.49 -7.94 12.28 -16.63 -0.20 -8.15 16 8 C -0.10 -1.02 5.88 -104.87 -0.62 -1.63 16 9 C -0.12 -0.93 9.51 -39.11 -0.37 -1.30 16 10 C 0.12 0.89 7.28 -39.50 -0.29 0.60 16 11 F -0.12 -0.99 17.26 2.25 0.04 -0.96 16 12 C -0.15 -1.05 9.98 -39.41 -0.39 -1.44 16 13 C 0.10 0.82 7.30 -39.35 -0.29 0.53 16 14 F -0.12 -1.07 17.11 2.25 0.04 -1.03 16 15 C 0.13 1.30 6.72 -38.67 -0.26 1.04 16 16 O -0.46 -4.83 11.43 -40.91 -0.47 -5.30 16 17 N -0.32 -7.07 12.59 31.43 0.40 -6.67 16 18 N -0.31 -7.25 3.59 -58.33 -0.21 -7.46 16 19 C 0.26 6.47 5.81 -5.19 -0.03 6.44 16 20 C -0.54 -14.56 9.39 -34.44 -0.32 -14.88 16 21 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 22 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -24.70 13.29 55.43 0.74 -23.96 16 24 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.08 1.49 7.71 -51.93 -0.40 1.09 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.16 3.03 5.91 -52.49 -0.31 2.72 16 32 H 0.41 4.70 6.85 -40.82 -0.28 4.42 16 33 H 0.15 0.96 6.40 -52.48 -0.34 0.62 16 34 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.40 2.59 9.06 45.56 0.41 3.01 16 36 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.06 1.36 7.65 -51.93 -0.40 0.96 16 38 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 345.50 15.07 5.21 5.21 Total: -1.00 -32.59 345.50 -6.71 -39.29 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -2.55 Total: 5.71 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -4.61 Total: -3.36 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.86 Total: -47.26 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.67 Total: -13.44 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.08 Total: -1.99 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.59 -6.71 -39.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362269041.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.411 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds