Wall clock time and date at job start Tue Mar 31 2020 19:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40424 * 107.86568 * 179.84878 * 3 2 1 5 5 N 1.40091 * 125.97363 * 180.16817 * 4 3 2 6 6 C 1.34776 * 120.00325 * 0.32152 * 5 4 3 7 7 O 1.21601 * 119.99749 * 359.97438 * 6 5 4 8 8 C 1.47518 * 120.00092 * 180.02562 * 6 5 4 9 9 C 1.39772 * 120.16829 * 359.97438 * 8 6 5 10 10 C 1.37969 * 119.91841 * 180.02562 * 9 8 6 11 11 F 1.35101 * 119.86348 * 180.02562 * 10 9 8 12 12 C 1.38733 * 120.26781 * 0.02562 * 10 9 8 13 13 C 1.38209 * 120.34277 * 359.97438 * 12 10 9 14 14 F 1.35104 * 119.95873 * 179.97438 * 13 12 10 15 15 C 1.38889 * 120.07463 * 359.67900 * 13 12 10 16 16 O 1.35762 * 120.13702 * 180.30325 * 15 13 12 17 17 N 1.31229 * 108.04913 * 0.41799 * 4 3 2 18 18 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 19 19 C 1.46503 * 125.97339 * 359.97438 * 18 2 1 20 20 C 1.50699 * 109.46808 * 90.00128 * 19 18 2 21 21 H 1.07995 * 120.00443 * 359.97438 * 20 19 18 22 22 C 1.37881 * 119.99491 * 179.97438 * 20 19 18 23 23 N 1.31507 * 120.00456 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99592 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47333 * 90.00493 * 24 22 20 26 26 H 1.48506 * 109.46947 * 210.00154 * 24 22 20 27 27 H 1.48498 * 109.47466 * 329.99978 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 31 31 H 1.08001 * 126.06816 * 359.96971 * 3 2 1 32 32 H 0.97010 * 120.00037 * 180.32420 * 5 4 3 33 33 H 1.08003 * 120.04517 * 359.97438 * 9 8 6 34 34 H 1.07996 * 119.82587 * 179.97438 * 12 10 9 35 35 H 0.96699 * 113.99668 * 270.32238 * 16 15 13 36 36 H 1.08997 * 109.46890 * 209.99586 * 19 18 2 37 37 H 1.08999 * 109.46830 * 329.99997 * 19 18 2 38 38 H 0.96999 * 120.00499 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0035 5 7 4.7730 1.4744 0.0080 6 6 4.6363 2.8152 0.0158 7 8 3.5270 3.3132 0.0185 8 6 5.8324 3.6786 0.0199 9 6 7.1092 3.1099 0.0163 10 6 8.2244 3.9223 0.0208 11 9 9.4580 3.3714 0.0168 12 6 8.0841 5.3025 0.0293 13 6 6.8268 5.8764 0.0330 14 9 6.6992 7.2214 0.0418 15 6 5.6945 5.0722 0.0213 16 8 4.4589 5.6347 0.0186 17 7 3.6337 -0.6578 -0.0035 18 7 2.3016 -1.0910 -0.0059 19 6 1.8499 -2.4846 -0.0129 20 6 1.6945 -2.9551 -1.4362 21 1 1.9102 -2.2832 -2.2537 22 6 1.2769 -4.2435 -1.6946 23 7 1.0138 -5.0616 -0.6992 24 14 1.0837 -4.8265 -3.4588 25 1 2.3644 -5.4121 -3.9297 26 1 0.0148 -5.8552 -3.5258 27 1 0.7180 -3.6757 -4.3232 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 1.9719 2.1210 -0.0005 32 1 5.6581 1.0772 0.0055 33 1 7.2228 2.0359 0.0109 34 1 8.9619 5.9316 0.0332 35 1 4.0984 5.7960 0.9013 36 1 2.5847 -3.1073 0.4973 37 1 0.8914 -2.5584 0.5009 38 1 0.7203 -5.9681 -0.8809 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362269041.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:02 Heat of formation + Delta-G solvation = -75.206051 kcal Electronic energy + Delta-G solvation = -27731.489467 eV Core-core repulsion = 23211.709371 eV Total energy + Delta-G solvation = -4519.780096 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.14835 -50.10374 -42.42498 -41.42196 -39.60213 -37.83365 -36.36847 -35.34786 -33.38266 -32.70505 -32.08954 -30.54640 -28.65728 -27.89133 -26.18607 -24.83961 -23.96136 -22.84391 -21.36804 -21.06687 -19.78508 -19.32167 -18.79362 -18.68359 -17.66392 -17.54186 -17.41675 -17.13481 -16.84361 -16.58744 -16.53106 -16.18312 -16.15902 -15.65172 -15.57636 -15.35877 -14.70084 -14.64149 -14.33906 -13.88629 -13.80878 -13.64959 -13.58132 -13.27802 -13.16823 -12.86803 -12.81913 -12.69382 -12.26783 -12.12469 -12.03707 -11.57800 -11.38319 -11.01540 -10.73796 -10.40267 -9.79025 -9.60869 -9.17085 -8.33236 -6.50640 -0.78889 -0.36990 0.93121 1.19903 1.36353 1.38230 1.40180 1.50897 1.93288 2.14409 2.34839 2.37545 2.57685 2.81923 2.96889 3.11748 3.20685 3.55998 3.71095 3.84497 4.11723 4.18321 4.37551 4.43802 4.52001 4.59767 4.69132 4.76213 4.78037 4.86723 4.97449 4.98823 5.12590 5.25260 5.35991 5.53520 5.80716 5.88331 6.16314 6.24571 6.57003 6.61575 6.86107 7.01288 7.20484 8.72851 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.018586 B = 0.002432 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.160036 B =11510.939861 C =12378.456684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.089 3.911 3 C -0.296 4.296 4 C 0.272 3.728 5 N -0.617 5.617 6 C 0.568 3.432 7 O -0.514 6.514 8 C -0.113 4.113 9 C -0.104 4.104 10 C 0.119 3.881 11 F -0.124 7.124 12 C -0.129 4.129 13 C 0.093 3.907 14 F -0.122 7.122 15 C 0.130 3.870 16 O -0.480 6.480 17 N -0.354 5.354 18 N -0.341 5.341 19 C 0.275 3.725 20 C -0.553 4.553 21 H 0.049 0.951 22 C 0.024 3.976 23 N -0.917 5.917 24 Si 0.970 3.030 25 H -0.275 1.275 26 H -0.271 1.271 27 H -0.270 1.270 28 H 0.094 0.906 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.170 0.830 32 H 0.423 0.577 33 H 0.169 0.831 34 H 0.186 0.814 35 H 0.415 0.585 36 H 0.026 0.974 37 H 0.053 0.947 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.471 21.376 4.068 25.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.042 4.042 3 C -0.327 4.327 4 C 0.018 3.982 5 N -0.268 5.268 6 C 0.356 3.644 7 O -0.389 6.389 8 C -0.117 4.117 9 C -0.123 4.123 10 C 0.099 3.901 11 F -0.102 7.102 12 C -0.148 4.148 13 C 0.073 3.927 14 F -0.101 7.101 15 C 0.082 3.918 16 O -0.293 6.293 17 N -0.185 5.185 18 N -0.124 5.124 19 C 0.156 3.844 20 C -0.592 4.592 21 H 0.068 0.932 22 C -0.177 4.177 23 N -0.556 5.556 24 Si 0.794 3.206 25 H -0.200 1.200 26 H -0.196 1.196 27 H -0.194 1.194 28 H 0.112 0.888 29 H 0.085 0.915 30 H 0.121 0.879 31 H 0.187 0.813 32 H 0.263 0.737 33 H 0.186 0.814 34 H 0.203 0.797 35 H 0.276 0.724 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.384 20.407 3.537 24.131 hybrid contribution 0.023 -0.147 -0.248 0.290 sum 12.407 20.260 3.289 23.983 Atomic orbital electron populations 1.20513 0.85355 1.04402 1.04182 1.21756 0.96693 0.86405 0.99318 1.21446 0.89769 1.00039 1.21420 1.19196 0.88489 0.89211 1.01277 1.42345 1.07288 1.04785 1.72336 1.18077 0.89207 0.80636 0.76512 1.90763 1.26646 1.73909 1.47552 1.19516 0.92366 0.92305 1.07562 1.21467 0.89405 1.02463 0.99012 1.16921 0.79988 0.90463 1.02689 1.91596 1.39278 1.85633 1.93690 1.21393 0.98060 0.94375 1.01009 1.17444 0.92716 0.77671 1.04904 1.91565 1.96607 1.28115 1.93770 1.18450 0.85559 0.88905 0.98864 1.84797 1.27816 1.81327 1.35386 1.77181 1.00142 1.09821 1.31307 1.48811 1.01703 1.07586 1.54272 1.19257 0.94985 0.72370 0.97749 1.21440 1.47569 0.98359 0.91803 0.93230 1.25708 0.93947 0.95915 1.02151 1.69991 1.45080 1.07404 1.33090 0.85379 0.78265 0.78205 0.78793 1.20010 1.19554 1.19440 0.88762 0.91471 0.87920 0.81300 0.73745 0.81359 0.79685 0.72356 0.95626 0.92930 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.81 9.89 71.24 0.70 -2.10 16 2 C 0.09 3.64 6.92 41.38 0.29 3.92 16 3 C -0.30 -11.65 9.52 22.11 0.21 -11.44 16 4 C 0.27 10.64 8.11 133.35 1.08 11.72 16 5 N -0.62 -17.68 5.40 -310.39 -1.68 -19.36 16 6 C 0.57 15.13 7.73 86.69 0.67 15.80 16 7 O -0.51 -16.58 12.28 16.92 0.21 -16.38 16 8 C -0.11 -2.14 5.88 -20.02 -0.12 -2.26 16 9 C -0.10 -1.43 9.51 22.58 0.21 -1.22 16 10 C 0.12 1.44 7.28 22.32 0.16 1.61 16 11 F -0.12 -1.62 17.26 44.97 0.78 -0.85 16 12 C -0.13 -1.36 9.98 22.38 0.22 -1.13 16 13 C 0.09 1.35 7.30 22.42 0.16 1.52 16 14 F -0.12 -1.96 17.11 44.97 0.77 -1.19 16 15 C 0.13 2.38 6.72 22.86 0.15 2.53 16 16 O -0.48 -9.71 11.43 -69.93 -0.80 -10.51 16 17 N -0.35 -16.14 12.59 -54.48 -0.69 -16.83 16 18 N -0.34 -16.17 3.59 -338.45 -1.22 -17.39 16 19 C 0.28 14.32 5.81 85.63 0.50 14.82 16 20 C -0.55 -30.69 9.39 25.60 0.24 -30.45 16 21 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 22 C 0.02 1.30 5.46 84.66 0.46 1.76 16 23 N -0.92 -51.32 13.29 21.45 0.28 -51.04 16 24 Si 0.97 42.72 29.54 68.60 2.03 44.75 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 28 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.07 2.41 7.71 -2.39 -0.02 2.39 16 30 H 0.10 2.75 8.14 -2.38 -0.02 2.73 16 31 H 0.17 6.33 5.91 -2.91 -0.02 6.31 16 32 H 0.42 9.33 6.85 -92.70 -0.64 8.70 16 33 H 0.17 1.73 6.40 -2.91 -0.02 1.71 16 34 H 0.19 0.95 8.06 -2.91 -0.02 0.93 16 35 H 0.42 5.18 9.06 -74.06 -0.67 4.50 16 36 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.05 2.71 7.65 -2.39 -0.02 2.69 16 38 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -70.77 345.50 4.51 -66.26 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -0.13 Total: 17.47 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 4.95 Total: 5.07 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -3.29 Total: -104.61 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.59 Total: -26.89 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 1.55 Total: -2.04 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -70.77 4.51 -66.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362269041.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.946 kcal (2) G-P(sol) polarization free energy of solvation -70.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds