Wall clock time and date at job start Tue Mar 31 2020 19:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47589 * 2 1 4 4 N 1.46501 * 109.47096 * 120.00007 * 2 1 3 5 5 N 1.28939 * 126.47088 * 300.02483 * 4 2 1 6 6 N 1.28573 * 109.63323 * 179.97438 * 5 4 2 7 7 C 1.33382 * 109.89421 * 0.02562 * 6 5 4 8 8 N 1.39629 * 126.26264 * 180.02562 * 7 6 5 9 9 S 1.65602 * 119.99594 * 14.74595 * 8 7 6 10 10 O 1.42096 * 106.39902 * 178.54212 * 9 8 7 11 11 O 1.42101 * 106.40292 * 311.46072 * 9 8 7 12 12 C 1.76196 * 107.21741 * 65.00480 * 9 8 7 13 13 C 1.38637 * 119.74536 * 269.72566 * 12 9 8 14 14 C 1.37621 * 120.24573 * 179.72220 * 13 12 9 15 15 C 1.40716 * 119.74275 * 0.57288 * 14 13 12 16 16 C 1.41405 * 120.24423 * 179.68036 * 15 14 13 17 17 H 1.08003 * 119.99393 * 24.40314 * 16 15 14 18 18 C 1.39942 * 119.99969 * 204.40120 * 16 15 14 19 19 N 1.30823 * 120.00220 * 17.87054 * 18 16 15 20 20 Si 1.86800 * 119.99756 * 197.86762 * 18 16 15 21 21 H 1.48494 * 109.47415 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47131 * 120.00137 * 20 18 16 23 23 H 1.48506 * 109.47124 * 240.00015 * 20 18 16 24 24 C 1.40707 * 119.51388 * 359.69986 * 15 14 13 25 25 C 1.37619 * 119.74711 * 0.02562 * 24 15 14 26 26 N 1.31690 * 107.48236 * 0.26262 * 7 6 5 27 27 H 1.09000 * 109.47404 * 300.00608 * 1 2 3 28 28 H 1.09007 * 109.46900 * 60.00270 * 1 2 3 29 29 H 1.08996 * 109.47552 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47147 * 239.99874 * 2 1 3 31 31 H 1.08994 * 109.47476 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46811 * 300.00315 * 3 2 1 33 33 H 1.09000 * 109.47244 * 59.99294 * 3 2 1 34 34 H 0.96998 * 119.99857 * 195.02535 * 8 7 6 35 35 H 1.08003 * 119.88081 * 359.97438 * 13 12 9 36 36 H 1.08002 * 120.13066 * 180.27124 * 14 13 12 37 37 H 0.96998 * 120.00296 * 180.02562 * 19 18 16 38 38 H 1.08006 * 120.13180 * 179.97438 * 24 15 14 39 39 H 1.07999 * 119.88050 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7846 -0.3609 2.4206 6 7 2.3701 -1.1895 3.2104 7 6 3.0223 -2.1106 2.4994 8 7 3.7717 -3.1715 3.0119 9 16 3.6229 -3.5965 4.6055 10 8 4.4765 -4.7151 4.8037 11 8 3.7321 -2.3933 5.3536 12 6 1.9766 -4.1796 4.8382 13 6 0.9764 -3.2900 5.1994 14 6 -0.3141 -3.7333 5.3783 15 6 -0.6141 -5.0971 5.2051 16 6 -1.9352 -5.5652 5.3928 17 1 -2.7691 -4.8885 5.2784 18 6 -2.1619 -6.9051 5.7269 19 7 -1.1862 -7.6345 6.2039 20 14 -3.8578 -7.6522 5.4917 21 1 -4.7789 -6.6258 4.9412 22 1 -3.7688 -8.7944 4.5470 23 1 -4.3736 -8.1306 6.7996 24 6 0.4101 -5.9918 4.8440 25 6 1.6924 -5.5253 4.6648 26 7 2.8344 -1.8334 1.2258 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 4.3824 -3.6568 2.4354 35 1 1.2101 -2.2446 5.3369 36 1 -1.0926 -3.0379 5.6554 37 1 -1.3432 -8.5633 6.4351 38 1 0.1911 -7.0407 4.7089 39 1 2.4803 -6.2102 4.3881 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364048717.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:47 Heat of formation + Delta-G solvation = 70.498626 kcal Electronic energy + Delta-G solvation = -26744.588453 eV Core-core repulsion = 22817.259723 eV Total energy + Delta-G solvation = -3927.328730 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.02783 -37.56461 -37.01290 -36.54326 -35.27225 -35.12049 -34.05189 -32.25659 -30.67456 -30.26872 -29.43200 -27.74027 -25.84302 -24.96884 -22.88530 -21.57779 -21.35618 -21.10516 -18.95164 -17.87773 -17.61134 -17.39418 -16.91808 -16.80548 -16.28547 -15.48514 -14.89543 -14.67040 -14.14433 -13.89549 -13.79944 -13.42224 -13.21014 -13.02729 -12.73670 -12.48325 -12.31114 -12.22074 -12.15519 -11.97399 -11.77252 -11.71201 -11.49836 -11.40903 -11.37174 -11.35437 -11.19656 -10.88964 -10.57553 -10.45639 -10.37674 -9.74968 -9.62394 -9.50407 -9.16872 -7.97466 -7.67623 -7.15345 -4.81073 0.82124 1.10723 1.75545 2.23777 2.46553 2.85401 2.88929 2.94320 2.96963 3.11801 3.65360 3.97051 4.16467 4.24992 4.38634 4.50919 4.55884 4.70136 5.05572 5.09504 5.13334 5.30021 5.38637 5.39852 5.54680 5.72345 5.79451 5.98669 6.11821 6.24081 6.27955 6.66916 6.68389 6.78448 6.98029 7.06392 7.36430 7.45449 7.63967 7.77917 7.97714 8.31442 8.35873 8.51077 8.65570 9.75797 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011797 B = 0.003839 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.003491 B = 7291.648033 C = 9046.155790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.163 3.837 3 C -0.166 4.166 4 N -0.200 5.200 5 N 0.022 4.978 6 N -0.304 5.304 7 C 0.447 3.553 8 N -1.005 6.005 9 S 2.678 3.322 10 O -0.964 6.964 11 O -0.945 6.945 12 C -0.784 4.784 13 C 0.014 3.986 14 C -0.241 4.241 15 C 0.141 3.859 16 C -0.432 4.432 17 H 0.088 0.912 18 C 0.072 3.928 19 N -0.762 5.762 20 Si 0.917 3.083 21 H -0.256 1.256 22 H -0.268 1.268 23 H -0.269 1.269 24 C -0.184 4.184 25 C -0.016 4.016 26 N -0.329 5.329 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.120 0.880 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.433 0.567 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.289 0.711 38 H 0.123 0.877 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.152 9.945 -13.074 16.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 C -0.224 4.224 4 N -0.115 5.115 5 N 0.027 4.973 6 N -0.184 5.184 7 C 0.073 3.927 8 N -0.755 5.755 9 S 2.779 3.221 10 O -0.955 6.955 11 O -0.935 6.935 12 C -0.882 4.882 13 C -0.006 4.006 14 C -0.262 4.262 15 C 0.137 3.863 16 C -0.459 4.459 17 H 0.106 0.894 18 C -0.151 4.151 19 N -0.384 5.384 20 Si 0.740 3.260 21 H -0.180 1.180 22 H -0.192 1.192 23 H -0.194 1.194 24 C -0.204 4.204 25 C -0.037 4.037 26 N -0.178 5.178 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.137 0.863 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.270 0.730 35 H 0.134 0.866 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.141 0.859 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.565 10.337 -12.299 16.269 hybrid contribution -0.756 -1.447 -0.621 1.747 sum 1.809 8.890 -12.920 15.787 Atomic orbital electron populations 1.22256 0.91680 1.04210 1.04469 1.21729 0.95974 0.93240 0.82913 1.22245 1.02393 0.93292 1.04502 1.53484 1.33008 1.18357 1.06663 1.78322 1.12945 1.17395 0.88657 1.75565 1.14406 1.03261 1.25131 1.21028 0.93643 0.90461 0.87532 1.53662 1.50847 1.37919 1.33082 1.02059 0.75678 0.73361 0.71048 1.93547 1.66886 1.52440 1.82621 1.93556 1.87159 1.46719 1.66063 1.28849 1.20172 1.02939 1.36275 1.20334 0.92323 0.97011 0.90962 1.21029 0.95488 0.96302 1.13336 1.17890 0.93037 0.91278 0.84049 1.20002 0.93709 0.94546 1.37673 0.89355 1.26161 0.99888 0.97071 0.91979 1.69832 1.33940 1.09199 1.25436 0.86104 0.81001 0.79638 0.79261 1.17973 1.19235 1.19439 1.21324 0.92165 1.00242 1.06689 1.20268 0.96702 0.92095 0.94629 1.78833 1.17452 1.04539 1.16999 0.90400 0.89375 0.91152 0.86252 0.91496 0.89363 0.90462 0.73041 0.86603 0.88124 0.89931 0.85941 0.87798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 9.41 37.16 0.35 -0.86 16 2 C 0.16 1.35 3.97 -67.93 -0.27 1.08 16 3 C -0.17 -1.03 9.41 37.16 0.35 -0.68 16 4 N -0.20 -2.72 4.06 -4.89 -0.02 -2.74 16 5 N 0.02 0.35 12.99 60.35 0.78 1.13 16 6 N -0.30 -5.74 10.59 30.02 0.32 -5.42 16 7 C 0.45 7.91 8.88 -320.88 -2.85 5.06 16 8 N -1.00 -16.69 5.90 30.04 0.18 -16.52 16 9 S 2.68 53.75 5.59 -107.50 -0.60 53.15 16 10 O -0.96 -20.42 17.26 -57.17 -0.99 -21.40 16 11 O -0.95 -20.87 16.22 -57.17 -0.93 -21.80 16 12 C -0.78 -17.90 5.93 -39.29 -0.23 -18.14 16 13 C 0.01 0.33 9.32 -39.66 -0.37 -0.04 16 14 C -0.24 -5.88 9.80 -38.87 -0.38 -6.26 16 15 C 0.14 3.63 5.58 -106.82 -0.60 3.04 16 16 C -0.43 -10.68 9.05 -37.74 -0.34 -11.02 16 17 H 0.09 2.07 7.91 -52.48 -0.42 1.65 16 18 C 0.07 1.66 5.14 -17.34 -0.09 1.57 16 19 N -0.76 -18.30 10.95 55.55 0.61 -17.69 16 20 Si 0.92 17.01 29.60 -169.99 -5.03 11.98 16 21 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 22 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 23 H -0.27 -4.93 7.11 56.52 0.40 -4.52 16 24 C -0.18 -4.65 8.70 -38.88 -0.34 -4.99 16 25 C -0.02 -0.39 9.49 -39.66 -0.38 -0.76 16 26 N -0.33 -5.16 12.79 30.03 0.38 -4.78 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 0.37 8.14 -51.92 -0.42 -0.06 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.43 5.61 8.95 -34.48 -0.31 5.30 16 35 H 0.12 2.60 7.14 -52.48 -0.37 2.22 16 36 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 37 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 38 H 0.12 3.11 6.16 -52.48 -0.32 2.79 16 39 H 0.10 2.23 7.60 -52.49 -0.40 1.83 16 LS Contribution 353.05 15.07 5.32 5.32 Total: -1.00 -32.37 353.05 -9.46 -41.82 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -4.34 Total: 8.95 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: -5.15 Total: -32.01 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 2.25 Total: -46.01 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -1.91 Total: -43.20 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.03 Total: 11.98 kcal Atomic # 16 Polarization: 53.75 SS G_CDS: -0.60 Total: 53.15 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.37 -9.46 -41.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364048717.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.320 kcal (2) G-P(sol) polarization free energy of solvation -32.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds