Wall clock time and date at job start Tue Mar 31 2020 19:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47589 * 2 1 4 4 N 1.46501 * 109.47096 * 120.00007 * 2 1 3 5 5 N 1.28939 * 126.47088 * 300.02483 * 4 2 1 6 6 N 1.28573 * 109.63323 * 179.97438 * 5 4 2 7 7 C 1.33382 * 109.89421 * 0.02562 * 6 5 4 8 8 N 1.39629 * 126.26264 * 180.02562 * 7 6 5 9 9 S 1.65602 * 119.99594 * 14.74595 * 8 7 6 10 10 O 1.42096 * 106.39902 * 178.54212 * 9 8 7 11 11 O 1.42101 * 106.40292 * 311.46072 * 9 8 7 12 12 C 1.76196 * 107.21741 * 65.00480 * 9 8 7 13 13 C 1.38637 * 119.74536 * 269.72566 * 12 9 8 14 14 C 1.37621 * 120.24573 * 179.72220 * 13 12 9 15 15 C 1.40716 * 119.74275 * 0.57288 * 14 13 12 16 16 C 1.41405 * 120.24423 * 179.68036 * 15 14 13 17 17 H 1.08003 * 119.99393 * 24.40314 * 16 15 14 18 18 C 1.39942 * 119.99969 * 204.40120 * 16 15 14 19 19 N 1.30823 * 120.00220 * 17.87054 * 18 16 15 20 20 Si 1.86800 * 119.99756 * 197.86762 * 18 16 15 21 21 H 1.48494 * 109.47415 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47131 * 120.00137 * 20 18 16 23 23 H 1.48506 * 109.47124 * 240.00015 * 20 18 16 24 24 C 1.40707 * 119.51388 * 359.69986 * 15 14 13 25 25 C 1.37619 * 119.74711 * 0.02562 * 24 15 14 26 26 N 1.31690 * 107.48236 * 0.26262 * 7 6 5 27 27 H 1.09000 * 109.47404 * 300.00608 * 1 2 3 28 28 H 1.09007 * 109.46900 * 60.00270 * 1 2 3 29 29 H 1.08996 * 109.47552 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47147 * 239.99874 * 2 1 3 31 31 H 1.08994 * 109.47476 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46811 * 300.00315 * 3 2 1 33 33 H 1.09000 * 109.47244 * 59.99294 * 3 2 1 34 34 H 0.96998 * 119.99857 * 195.02535 * 8 7 6 35 35 H 1.08003 * 119.88081 * 359.97438 * 13 12 9 36 36 H 1.08002 * 120.13066 * 180.27124 * 14 13 12 37 37 H 0.96998 * 120.00296 * 180.02562 * 19 18 16 38 38 H 1.08006 * 120.13180 * 179.97438 * 24 15 14 39 39 H 1.07999 * 119.88050 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7846 -0.3609 2.4206 6 7 2.3701 -1.1895 3.2104 7 6 3.0223 -2.1106 2.4994 8 7 3.7717 -3.1715 3.0119 9 16 3.6229 -3.5965 4.6055 10 8 4.4765 -4.7151 4.8037 11 8 3.7321 -2.3933 5.3536 12 6 1.9766 -4.1796 4.8382 13 6 0.9764 -3.2900 5.1994 14 6 -0.3141 -3.7333 5.3783 15 6 -0.6141 -5.0971 5.2051 16 6 -1.9352 -5.5652 5.3928 17 1 -2.7691 -4.8885 5.2784 18 6 -2.1619 -6.9051 5.7269 19 7 -1.1862 -7.6345 6.2039 20 14 -3.8578 -7.6522 5.4917 21 1 -4.7789 -6.6258 4.9412 22 1 -3.7688 -8.7944 4.5470 23 1 -4.3736 -8.1306 6.7996 24 6 0.4101 -5.9918 4.8440 25 6 1.6924 -5.5253 4.6648 26 7 2.8344 -1.8334 1.2258 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 4.3824 -3.6568 2.4354 35 1 1.2101 -2.2446 5.3369 36 1 -1.0926 -3.0379 5.6554 37 1 -1.3432 -8.5633 6.4351 38 1 0.1911 -7.0407 4.7089 39 1 2.4803 -6.2102 4.3881 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364048717.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:46 Heat of formation + Delta-G solvation = 49.627276 kcal Electronic energy + Delta-G solvation = -26745.493503 eV Core-core repulsion = 22817.259723 eV Total energy + Delta-G solvation = -3928.233779 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.26624 -39.41437 -38.38517 -37.86538 -36.96855 -36.31009 -35.84619 -33.44974 -32.11867 -31.83870 -31.30356 -28.28011 -27.67674 -26.05066 -24.18657 -23.35213 -23.00222 -22.40543 -20.41209 -19.45178 -19.21322 -18.82072 -18.33526 -17.99415 -17.69724 -17.18300 -16.43146 -15.83999 -15.50278 -15.25870 -15.12811 -15.02103 -14.62055 -14.18314 -13.99662 -13.82982 -13.64171 -13.53490 -13.37254 -13.28140 -13.20011 -13.11995 -13.05666 -12.98240 -12.90704 -12.60833 -12.47540 -12.11257 -12.02163 -11.83969 -11.60460 -11.54866 -11.37403 -11.23759 -10.53273 -9.84488 -9.57163 -8.90380 -6.68946 -0.76350 -0.10917 0.42906 0.70155 1.05348 1.12464 1.34798 1.40089 1.52756 1.71408 2.10527 2.43076 2.64262 2.97416 3.05243 3.44122 3.51256 3.77055 3.81503 3.97546 4.27765 4.29897 4.37666 4.50712 4.64650 4.65825 4.76641 4.82914 4.83753 4.91809 5.07767 5.20300 5.21035 5.21643 5.31894 5.49718 5.54879 5.58841 5.74208 5.90431 6.12883 6.45150 6.64795 6.77729 7.10032 8.04980 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011797 B = 0.003839 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.003491 B = 7291.648033 C = 9046.155790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.144 3.856 3 C -0.160 4.160 4 N -0.178 5.178 5 N 0.015 4.985 6 N -0.345 5.345 7 C 0.430 3.570 8 N -0.992 5.992 9 S 2.719 3.281 10 O -0.973 6.973 11 O -0.963 6.963 12 C -0.798 4.798 13 C 0.013 3.987 14 C -0.260 4.260 15 C 0.114 3.886 16 C -0.460 4.460 17 H 0.092 0.908 18 C 0.034 3.966 19 N -0.793 5.793 20 Si 0.994 3.006 21 H -0.253 1.253 22 H -0.260 1.260 23 H -0.261 1.261 24 C -0.207 4.207 25 C -0.020 4.020 26 N -0.325 5.325 27 H 0.065 0.935 28 H 0.127 0.873 29 H 0.052 0.948 30 H 0.143 0.857 31 H 0.060 0.940 32 H 0.126 0.874 33 H 0.066 0.934 34 H 0.450 0.550 35 H 0.123 0.877 36 H 0.108 0.892 37 H 0.300 0.700 38 H 0.115 0.885 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.667 10.506 -15.068 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.046 3.954 3 C -0.218 4.218 4 N -0.096 5.096 5 N 0.021 4.979 6 N -0.224 5.224 7 C 0.056 3.944 8 N -0.748 5.748 9 S 2.816 3.184 10 O -0.964 6.964 11 O -0.953 6.953 12 C -0.893 4.893 13 C -0.007 4.007 14 C -0.281 4.281 15 C 0.111 3.889 16 C -0.487 4.487 17 H 0.110 0.890 18 C -0.186 4.186 19 N -0.416 5.416 20 Si 0.813 3.187 21 H -0.176 1.176 22 H -0.184 1.184 23 H -0.186 1.186 24 C -0.227 4.227 25 C -0.040 4.040 26 N -0.175 5.175 27 H 0.085 0.915 28 H 0.145 0.855 29 H 0.071 0.929 30 H 0.161 0.839 31 H 0.079 0.921 32 H 0.144 0.856 33 H 0.085 0.915 34 H 0.290 0.710 35 H 0.141 0.859 36 H 0.126 0.874 37 H 0.111 0.889 38 H 0.132 0.868 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.063 10.899 -14.290 18.089 hybrid contribution -0.533 -1.477 -0.166 1.579 sum 1.531 9.421 -14.456 17.323 Atomic orbital electron populations 1.22292 0.90614 1.03472 1.05853 1.22479 0.96843 0.94419 0.81672 1.22272 1.02012 0.91684 1.05842 1.54128 1.30902 1.17152 1.07371 1.78245 1.13093 1.17179 0.89433 1.75509 1.15855 1.04359 1.26665 1.21123 0.94428 0.90791 0.88103 1.53013 1.51201 1.38087 1.32456 1.00855 0.73951 0.72490 0.71116 1.93530 1.66521 1.52998 1.83301 1.93531 1.86912 1.47394 1.67457 1.29299 1.21766 1.02687 1.35548 1.20466 0.92252 0.97482 0.90546 1.21226 0.96350 0.96315 1.14194 1.18218 0.93904 0.91930 0.84873 1.20291 0.93552 0.96011 1.38847 0.88968 1.27066 1.04006 0.96726 0.90802 1.69857 1.36166 1.10008 1.25566 0.84973 0.75602 0.78682 0.79471 1.17624 1.18385 1.18577 1.21364 0.93117 0.99987 1.08263 1.20509 0.96642 0.92877 0.93979 1.78773 1.17555 1.05193 1.16001 0.91542 0.85460 0.92898 0.83935 0.92061 0.85614 0.91491 0.70992 0.85923 0.87370 0.88854 0.86751 0.86012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.41 71.98 0.68 -1.33 16 2 C 0.14 2.04 3.97 44.99 0.18 2.22 16 3 C -0.16 -1.55 9.41 71.98 0.68 -0.87 16 4 N -0.18 -4.61 4.06 -169.39 -0.69 -5.30 16 5 N 0.01 0.48 12.99 37.02 0.48 0.96 16 6 N -0.34 -13.01 10.59 -58.92 -0.62 -13.64 16 7 C 0.43 14.94 8.88 260.81 2.32 17.26 16 8 N -0.99 -32.18 5.90 -58.88 -0.35 -32.52 16 9 S 2.72 107.97 5.59 -56.49 -0.32 107.66 16 10 O -0.97 -40.28 17.26 -128.00 -2.21 -42.49 16 11 O -0.96 -42.35 16.22 -128.00 -2.08 -44.42 16 12 C -0.80 -36.78 5.93 22.46 0.13 -36.65 16 13 C 0.01 0.60 9.32 22.22 0.21 0.81 16 14 C -0.26 -13.12 9.80 22.73 0.22 -12.90 16 15 C 0.11 6.08 5.58 -21.29 -0.12 5.96 16 16 C -0.46 -23.30 9.05 23.46 0.21 -23.09 16 17 H 0.09 4.41 7.91 -2.91 -0.02 4.39 16 18 C 0.03 1.58 5.14 85.26 0.44 2.01 16 19 N -0.79 -38.63 10.95 21.83 0.24 -38.39 16 20 Si 0.99 34.46 29.60 68.60 2.03 36.49 16 21 H -0.25 -8.55 7.11 99.48 0.71 -7.84 16 22 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 23 H -0.26 -8.67 7.11 99.48 0.71 -7.97 16 24 C -0.21 -10.80 8.70 22.73 0.20 -10.60 16 25 C -0.02 -0.95 9.49 22.22 0.21 -0.74 16 26 N -0.33 -9.81 12.79 -58.91 -0.75 -10.57 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.13 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.45 11.07 8.95 -96.74 -0.87 10.21 16 35 H 0.12 5.62 7.14 -2.91 -0.02 5.60 16 36 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 37 H 0.30 12.88 8.30 -92.71 -0.77 12.11 16 38 H 0.11 6.03 6.16 -2.91 -0.02 6.01 16 39 H 0.12 5.24 7.60 -2.91 -0.02 5.22 16 Total: -1.00 -71.07 353.05 1.33 -69.74 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.24 Total: 30.41 kcal Atomic # 6 Polarization: -63.26 SS G_CDS: 5.35 Total: -57.91 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -1.69 Total: -99.46 kcal Atomic # 8 Polarization: -82.63 SS G_CDS: -4.29 Total: -86.91 kcal Atomic # 14 Polarization: 34.46 SS G_CDS: 2.03 Total: 36.49 kcal Atomic # 16 Polarization: 107.97 SS G_CDS: -0.32 Total: 107.66 kcal Total: -71.07 1.33 -69.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364048717.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.363 kcal (2) G-P(sol) polarization free energy of solvation -71.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds