Wall clock time and date at job start Tue Mar 31 2020 20:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46986 * 2 1 4 4 N 1.46507 * 109.46897 * 119.99753 * 2 1 3 5 5 S 1.65593 * 119.99908 * 266.25654 * 4 2 1 6 6 O 1.42100 * 106.40477 * 312.60672 * 5 4 2 7 7 O 1.42103 * 106.40092 * 179.68456 * 5 4 2 8 8 C 1.76204 * 107.21867 * 66.14988 * 5 4 2 9 9 C 1.37645 * 120.12366 * 244.73284 * 8 5 4 10 10 C 1.38613 * 120.24442 * 180.31743 * 9 8 5 11 11 C 1.38658 * 120.50165 * 359.67468 * 10 9 8 12 12 C 1.37598 * 120.24961 * 359.97438 * 11 10 9 13 13 C 1.40693 * 120.13099 * 64.42682 * 8 5 4 14 14 C 1.41390 * 120.24378 * 359.97438 * 13 8 5 15 15 H 1.08004 * 119.99971 * 329.25899 * 14 13 8 16 16 C 1.39943 * 120.00522 * 149.25618 * 14 13 8 17 17 N 1.30827 * 119.99512 * 336.30097 * 16 14 13 18 18 Si 1.86797 * 120.00438 * 156.29753 * 16 14 13 19 19 H 1.48500 * 109.47038 * 184.99899 * 18 16 14 20 20 H 1.48504 * 109.47102 * 304.99751 * 18 16 14 21 21 H 1.48503 * 109.47227 * 64.99539 * 18 16 14 22 22 C 1.50696 * 109.47435 * 239.99602 * 2 1 3 23 23 N 1.31070 * 126.66042 * 283.23965 * 22 2 1 24 24 N 1.28849 * 107.98814 * 179.89574 * 23 22 2 25 25 N 1.28729 * 109.39723 * 0.37266 * 24 23 22 26 26 N 1.29024 * 108.81046 * 359.77049 * 25 24 23 27 27 C 1.46503 * 126.43792 * 179.97438 * 26 25 24 28 28 H 1.08997 * 109.46986 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47210 * 300.00093 * 1 2 3 30 30 H 1.09008 * 109.46687 * 60.00107 * 1 2 3 31 31 H 0.96995 * 119.99701 * 86.25708 * 4 2 1 32 32 H 1.07995 * 119.88074 * 0.02562 * 9 8 5 33 33 H 1.08003 * 119.75309 * 179.69350 * 10 9 8 34 34 H 1.07999 * 119.87519 * 180.02562 * 11 10 9 35 35 H 1.08000 * 120.12465 * 180.02562 * 12 11 10 36 36 H 0.96999 * 120.00471 * 354.30809 * 17 16 14 37 37 H 1.09000 * 109.46770 * 273.76161 * 27 26 25 38 38 H 1.09004 * 109.47164 * 33.75710 * 27 26 25 39 39 H 1.08995 * 109.46880 * 153.76307 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 16 2.3825 0.1741 2.5607 6 8 3.1768 1.2742 2.1386 7 8 2.8152 -0.7702 3.5305 8 6 0.8735 0.8531 3.1663 9 6 0.6895 2.2170 3.1883 10 6 -0.4940 2.7541 3.6703 11 6 -1.5074 1.9261 4.1287 12 6 -1.3480 0.5595 4.1093 13 6 -0.1503 0.0031 3.6231 14 6 0.0248 -1.3997 3.5986 15 1 0.6428 -1.8536 2.8380 16 6 -0.6027 -2.2002 4.5599 17 7 -0.9493 -1.6876 5.7126 18 14 -0.9454 -4.0003 4.1972 19 1 -1.7194 -4.5923 5.3177 20 1 -1.7293 -4.1116 2.9408 21 1 0.3401 -4.7279 4.0446 22 6 2.0324 -0.7105 -1.2304 23 7 2.0663 -2.0059 -1.4270 24 7 2.5602 -2.2178 -2.5980 25 7 2.8495 -1.0915 -3.1502 26 7 2.5388 -0.1381 -2.3383 27 6 2.7062 1.2975 -2.5773 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 2.1282 -1.6543 1.1890 32 1 1.4718 2.8713 2.8333 33 1 -0.6280 3.8256 3.6886 34 1 -2.4255 2.3554 4.5017 35 1 -2.1388 -0.0835 4.4665 36 1 -0.6986 -0.7770 5.9336 37 1 3.7133 1.5988 -2.2889 38 1 2.5524 1.5102 -3.6353 39 1 1.9777 1.8517 -1.9855 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364063806.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:06 Heat of formation + Delta-G solvation = 56.060511 kcal Electronic energy + Delta-G solvation = -27907.696201 eV Core-core repulsion = 23979.741387 eV Total energy + Delta-G solvation = -3927.954813 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.24830 -37.97815 -36.88946 -36.32497 -35.69635 -35.06140 -34.16076 -32.08800 -30.32646 -29.70505 -29.47337 -28.55246 -25.44685 -24.70367 -23.33115 -21.92871 -21.54099 -21.26330 -19.01790 -18.37996 -17.80021 -17.35437 -16.92767 -16.72894 -15.98861 -15.03582 -14.78990 -14.61423 -14.21597 -14.00914 -13.92013 -13.75256 -13.49651 -13.37436 -12.92878 -12.76214 -12.46194 -12.27710 -12.12249 -11.75988 -11.54782 -11.42650 -11.32360 -11.30266 -11.22461 -11.17289 -10.99393 -10.96584 -10.61629 -10.50119 -10.19924 -9.92838 -9.76020 -9.30728 -9.13511 -8.33209 -7.92021 -7.53719 -4.92486 1.03458 1.30123 1.86757 2.10111 2.19211 2.56205 3.08948 3.16045 3.27066 3.57722 3.73379 3.85360 4.08134 4.26352 4.45415 4.56173 4.63218 4.89400 4.96531 5.00033 5.11221 5.29636 5.32597 5.48791 5.61429 5.80613 5.85929 5.92428 5.95518 6.11501 6.20042 6.39932 6.52579 6.77241 7.01445 7.17428 7.20723 7.33479 7.45877 7.53739 7.72453 7.87615 8.24482 8.47760 8.54278 9.73411 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.005231 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.812682 B = 5351.502416 C = 6470.362439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.244 3.756 3 H 0.110 0.890 4 N -1.111 6.111 5 S 2.699 3.301 6 O -0.998 6.998 7 O -0.954 6.954 8 C -0.781 4.781 9 C 0.011 3.989 10 C -0.261 4.261 11 C -0.056 4.056 12 C -0.205 4.205 13 C 0.166 3.834 14 C -0.493 4.493 15 H 0.089 0.911 16 C 0.045 3.955 17 N -0.769 5.769 18 Si 1.059 2.941 19 H -0.270 1.270 20 H -0.269 1.269 21 H -0.267 1.267 22 C 0.189 3.811 23 N -0.289 5.289 24 N -0.076 5.076 25 N -0.099 5.099 26 N -0.306 5.306 27 C 0.073 3.927 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.423 0.577 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.303 0.697 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.800 5.945 -11.047 12.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.132 3.868 3 H 0.128 0.872 4 N -0.867 5.867 5 S 2.797 3.203 6 O -0.988 6.988 7 O -0.944 6.944 8 C -0.877 4.877 9 C -0.009 4.009 10 C -0.282 4.282 11 C -0.075 4.075 12 C -0.225 4.225 13 C 0.161 3.839 14 C -0.520 4.520 15 H 0.107 0.893 16 C -0.180 4.180 17 N -0.390 5.390 18 Si 0.881 3.119 19 H -0.195 1.195 20 H -0.194 1.194 21 H -0.192 1.192 22 C -0.092 4.092 23 N -0.138 5.138 24 N -0.070 5.070 25 N -0.085 5.085 26 N -0.108 5.108 27 C -0.068 4.068 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.081 0.919 31 H 0.258 0.742 32 H 0.127 0.873 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.127 0.873 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.127 0.873 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.261 3.702 -10.798 11.484 hybrid contribution -0.171 2.218 -0.212 2.234 sum 1.090 5.920 -11.010 12.548 Atomic orbital electron populations 1.22409 0.91832 1.04985 1.03824 1.18982 0.95383 0.94305 0.78095 0.87229 1.55891 1.84031 1.20791 1.26023 1.01200 0.74518 0.72648 0.71959 1.93442 1.68252 1.54492 1.82638 1.93573 1.81354 1.62200 1.57306 1.29731 1.21290 1.02136 1.34550 1.20303 0.95587 0.92746 0.92268 1.20441 0.96544 0.97627 1.13573 1.20843 0.96957 0.94013 0.95661 1.21324 0.98128 0.94200 1.08832 1.16946 0.88835 0.91920 0.86240 1.20925 1.26093 0.91667 1.13323 0.89323 1.27116 0.91070 1.07964 0.91872 1.70456 1.30030 1.19260 1.19254 0.83709 0.78546 0.72160 0.77470 1.19465 1.19396 1.19180 1.26323 0.99469 0.90626 0.92740 1.74985 1.17376 1.11467 1.10003 1.78620 1.11876 1.15361 1.01093 1.78836 1.18957 0.92318 1.18377 1.48415 1.40400 1.10399 1.11572 1.22507 1.05867 0.72505 1.05967 0.90246 0.88685 0.91943 0.74164 0.87300 0.88519 0.88612 0.87256 0.88323 0.87966 0.87341 0.87251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 9.50 37.16 0.35 -1.90 16 2 C 0.24 3.34 3.18 -69.08 -0.22 3.12 16 3 H 0.11 1.27 6.48 -51.93 -0.34 0.93 16 4 N -1.11 -18.52 4.58 -5.88 -0.03 -18.55 16 5 S 2.70 54.24 4.96 -107.50 -0.53 53.71 16 6 O -1.00 -20.20 16.26 -57.17 -0.93 -21.13 16 7 O -0.95 -22.75 16.66 -57.17 -0.95 -23.71 16 8 C -0.78 -16.52 4.79 -38.87 -0.19 -16.71 16 9 C 0.01 0.21 9.54 -39.66 -0.38 -0.16 16 10 C -0.26 -5.00 10.05 -39.29 -0.39 -5.39 16 11 C -0.06 -1.11 10.02 -39.66 -0.40 -1.50 16 12 C -0.21 -4.52 7.97 -38.87 -0.31 -4.83 16 13 C 0.17 3.77 4.88 -106.83 -0.52 3.25 16 14 C -0.49 -11.51 7.51 -37.74 -0.28 -11.79 16 15 H 0.09 1.96 5.87 -52.48 -0.31 1.65 16 16 C 0.05 1.05 4.95 -17.34 -0.09 0.97 16 17 N -0.77 -18.84 12.48 55.55 0.69 -18.15 16 18 Si 1.06 20.22 29.99 -169.99 -5.10 15.12 16 19 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 20 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 21 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 22 C 0.19 2.63 6.95 -155.44 -1.08 1.55 16 23 N -0.29 -4.75 12.09 32.70 0.40 -4.36 16 24 N -0.08 -1.25 13.43 60.35 0.81 -0.44 16 25 N -0.10 -1.41 13.29 60.35 0.80 -0.61 16 26 N -0.31 -3.61 3.75 -65.03 -0.24 -3.85 16 27 C 0.07 0.45 11.12 59.85 0.67 1.11 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.09 1.42 6.59 -51.93 -0.34 1.08 16 30 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 31 H 0.42 6.97 8.28 -34.47 -0.29 6.68 16 32 H 0.11 1.95 7.33 -52.49 -0.38 1.56 16 33 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 34 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.11 2.47 6.83 -52.49 -0.36 2.11 16 36 H 0.30 7.62 6.78 -40.82 -0.28 7.34 16 37 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.11 0.45 7.26 -51.93 -0.38 0.08 16 LS Contribution 343.36 15.07 5.17 5.17 Total: -1.00 -31.23 343.36 -6.75 -37.98 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -4.00 Total: 11.09 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: -2.84 Total: -32.28 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 2.43 Total: -45.95 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -1.88 Total: -44.84 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.10 Total: 15.12 kcal Atomic # 16 Polarization: 54.24 SS G_CDS: -0.53 Total: 53.71 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.23 -6.75 -37.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364063806.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.036 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds