Wall clock time and date at job start Tue Mar 31 2020 20:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46986 * 2 1 4 4 N 1.46507 * 109.46897 * 119.99753 * 2 1 3 5 5 S 1.65593 * 119.99908 * 266.25654 * 4 2 1 6 6 O 1.42100 * 106.40477 * 312.60672 * 5 4 2 7 7 O 1.42103 * 106.40092 * 179.68456 * 5 4 2 8 8 C 1.76204 * 107.21867 * 66.14988 * 5 4 2 9 9 C 1.37645 * 120.12366 * 244.73284 * 8 5 4 10 10 C 1.38613 * 120.24442 * 180.31743 * 9 8 5 11 11 C 1.38658 * 120.50165 * 359.67468 * 10 9 8 12 12 C 1.37598 * 120.24961 * 359.97438 * 11 10 9 13 13 C 1.40693 * 120.13099 * 64.42682 * 8 5 4 14 14 C 1.41390 * 120.24378 * 359.97438 * 13 8 5 15 15 H 1.08004 * 119.99971 * 329.25899 * 14 13 8 16 16 C 1.39943 * 120.00522 * 149.25618 * 14 13 8 17 17 N 1.30827 * 119.99512 * 336.30097 * 16 14 13 18 18 Si 1.86797 * 120.00438 * 156.29753 * 16 14 13 19 19 H 1.48500 * 109.47038 * 184.99899 * 18 16 14 20 20 H 1.48504 * 109.47102 * 304.99751 * 18 16 14 21 21 H 1.48503 * 109.47227 * 64.99539 * 18 16 14 22 22 C 1.50696 * 109.47435 * 239.99602 * 2 1 3 23 23 N 1.31070 * 126.66042 * 283.23965 * 22 2 1 24 24 N 1.28849 * 107.98814 * 179.89574 * 23 22 2 25 25 N 1.28729 * 109.39723 * 0.37266 * 24 23 22 26 26 N 1.29024 * 108.81046 * 359.77049 * 25 24 23 27 27 C 1.46503 * 126.43792 * 179.97438 * 26 25 24 28 28 H 1.08997 * 109.46986 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47210 * 300.00093 * 1 2 3 30 30 H 1.09008 * 109.46687 * 60.00107 * 1 2 3 31 31 H 0.96995 * 119.99701 * 86.25708 * 4 2 1 32 32 H 1.07995 * 119.88074 * 0.02562 * 9 8 5 33 33 H 1.08003 * 119.75309 * 179.69350 * 10 9 8 34 34 H 1.07999 * 119.87519 * 180.02562 * 11 10 9 35 35 H 1.08000 * 120.12465 * 180.02562 * 12 11 10 36 36 H 0.96999 * 120.00471 * 354.30809 * 17 16 14 37 37 H 1.09000 * 109.46770 * 273.76161 * 27 26 25 38 38 H 1.09004 * 109.47164 * 33.75710 * 27 26 25 39 39 H 1.08995 * 109.46880 * 153.76307 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 16 2.3825 0.1741 2.5607 6 8 3.1768 1.2742 2.1386 7 8 2.8152 -0.7702 3.5305 8 6 0.8735 0.8531 3.1663 9 6 0.6895 2.2170 3.1883 10 6 -0.4940 2.7541 3.6703 11 6 -1.5074 1.9261 4.1287 12 6 -1.3480 0.5595 4.1093 13 6 -0.1503 0.0031 3.6231 14 6 0.0248 -1.3997 3.5986 15 1 0.6428 -1.8536 2.8380 16 6 -0.6027 -2.2002 4.5599 17 7 -0.9493 -1.6876 5.7126 18 14 -0.9454 -4.0003 4.1972 19 1 -1.7194 -4.5923 5.3177 20 1 -1.7293 -4.1116 2.9408 21 1 0.3401 -4.7279 4.0446 22 6 2.0324 -0.7105 -1.2304 23 7 2.0663 -2.0059 -1.4270 24 7 2.5602 -2.2178 -2.5980 25 7 2.8495 -1.0915 -3.1502 26 7 2.5388 -0.1381 -2.3383 27 6 2.7062 1.2975 -2.5773 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 2.1282 -1.6543 1.1890 32 1 1.4718 2.8713 2.8333 33 1 -0.6280 3.8256 3.6886 34 1 -2.4255 2.3554 4.5017 35 1 -2.1388 -0.0835 4.4665 36 1 -0.6986 -0.7770 5.9336 37 1 3.7133 1.5988 -2.2889 38 1 2.5524 1.5102 -3.6353 39 1 1.9777 1.8517 -1.9855 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364063806.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:05 Heat of formation + Delta-G solvation = 33.338470 kcal Electronic energy + Delta-G solvation = -27908.681502 eV Core-core repulsion = 23979.741387 eV Total energy + Delta-G solvation = -3928.940115 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.31455 -39.60554 -38.30315 -37.77605 -36.76952 -36.65862 -35.83209 -33.25034 -31.95613 -31.26907 -30.70731 -29.29661 -27.12970 -25.79831 -24.35270 -23.52615 -23.00088 -22.54986 -20.49368 -20.03580 -19.01039 -18.43687 -18.21681 -18.01881 -17.49786 -16.62624 -16.36274 -15.81402 -15.65049 -15.42656 -15.06713 -14.94363 -14.62224 -14.49515 -14.36568 -14.03384 -13.76403 -13.49205 -13.29092 -13.22445 -13.08609 -12.98478 -12.93658 -12.73979 -12.70470 -12.57971 -12.22031 -12.15067 -11.99205 -11.89997 -11.57024 -11.41215 -11.13206 -10.97144 -10.58636 -9.95802 -9.57592 -9.28858 -6.66225 -0.37460 0.11385 0.45595 0.92061 1.01056 1.05104 1.51974 1.63741 1.77495 2.15773 2.29234 2.60758 2.68079 2.90451 3.17976 3.33717 3.64068 3.73209 3.94940 4.07734 4.20685 4.25477 4.28457 4.34747 4.40045 4.57436 4.69122 4.70913 4.78083 4.86133 4.93281 5.11676 5.15882 5.31876 5.35324 5.53152 5.64050 5.71439 5.90149 5.94200 6.03536 6.21816 6.57443 6.80232 7.44544 7.95220 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.005231 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.812682 B = 5351.502416 C = 6470.362439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.243 3.757 3 H 0.138 0.862 4 N -1.108 6.108 5 S 2.719 3.281 6 O -0.997 6.997 7 O -0.997 6.997 8 C -0.785 4.785 9 C 0.003 3.997 10 C -0.252 4.252 11 C -0.052 4.052 12 C -0.230 4.230 13 C 0.156 3.844 14 C -0.528 4.528 15 H 0.091 0.909 16 C 0.013 3.987 17 N -0.799 5.799 18 Si 1.096 2.904 19 H -0.270 1.270 20 H -0.252 1.252 21 H -0.264 1.264 22 C 0.185 3.815 23 N -0.317 5.317 24 N -0.107 5.107 25 N -0.098 5.098 26 N -0.289 5.289 27 C 0.051 3.949 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.423 0.577 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.123 0.877 35 H 0.094 0.906 36 H 0.288 0.712 37 H 0.118 0.882 38 H 0.134 0.866 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.776 8.387 -12.787 15.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.132 3.868 3 H 0.155 0.845 4 N -0.866 5.866 5 S 2.816 3.184 6 O -0.988 6.988 7 O -0.987 6.987 8 C -0.880 4.880 9 C -0.017 4.017 10 C -0.272 4.272 11 C -0.071 4.071 12 C -0.250 4.250 13 C 0.151 3.849 14 C -0.555 4.555 15 H 0.109 0.891 16 C -0.206 4.206 17 N -0.421 5.421 18 Si 0.913 3.087 19 H -0.194 1.194 20 H -0.176 1.176 21 H -0.188 1.188 22 C -0.095 4.095 23 N -0.167 5.167 24 N -0.101 5.101 25 N -0.084 5.084 26 N -0.092 5.092 27 C -0.087 4.087 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.259 0.741 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.141 0.859 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.136 0.864 38 H 0.152 0.848 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.231 6.183 -12.553 14.047 hybrid contribution -0.102 1.755 0.204 1.770 sum 1.129 7.939 -12.349 14.724 Atomic orbital electron populations 1.22360 0.91399 1.04301 1.04610 1.19254 0.95717 0.95120 0.76711 0.84495 1.55575 1.84066 1.20729 1.26215 1.00440 0.73983 0.72118 0.71828 1.93430 1.68160 1.54506 1.82659 1.93520 1.82119 1.63475 1.59625 1.29939 1.21003 1.02969 1.34103 1.20670 0.96636 0.92348 0.92050 1.20886 0.95609 0.99378 1.11295 1.21202 0.98318 0.93163 0.94384 1.21332 0.97910 0.95309 1.10440 1.17148 0.89396 0.92158 0.86189 1.21059 1.27807 0.92416 1.14212 0.89111 1.28184 0.90320 1.10741 0.91387 1.70557 1.32687 1.18575 1.20265 0.83281 0.78743 0.68689 0.77979 1.19399 1.17593 1.18827 1.26162 0.99909 0.90146 0.93307 1.74900 1.18172 1.13233 1.10386 1.78602 1.13439 1.16543 1.01524 1.78745 1.18565 0.92476 1.18641 1.48781 1.38310 1.11857 1.10212 1.23174 1.07723 0.69373 1.08440 0.91783 0.90378 0.88509 0.74091 0.84934 0.84998 0.85900 0.88808 0.90004 0.86383 0.84798 0.84712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 9.50 71.98 0.68 -3.41 16 2 C 0.24 6.13 3.18 44.24 0.14 6.27 16 3 H 0.14 2.67 6.48 -2.39 -0.02 2.66 16 4 N -1.11 -36.11 4.58 -172.52 -0.79 -36.90 16 5 S 2.72 107.19 4.96 -56.49 -0.28 106.91 16 6 O -1.00 -38.16 16.26 -128.00 -2.08 -40.24 16 7 O -1.00 -48.27 16.66 -128.00 -2.13 -50.40 16 8 C -0.79 -32.43 4.79 22.73 0.11 -32.32 16 9 C 0.00 0.10 9.54 22.22 0.21 0.31 16 10 C -0.25 -8.74 10.05 22.46 0.23 -8.52 16 11 C -0.05 -1.96 10.02 22.22 0.22 -1.74 16 12 C -0.23 -10.20 7.97 22.73 0.18 -10.02 16 13 C 0.16 7.16 4.88 -21.29 -0.10 7.05 16 14 C -0.53 -25.30 7.51 23.46 0.18 -25.13 16 15 H 0.09 4.15 5.87 -2.91 -0.02 4.13 16 16 C 0.01 0.63 4.95 85.26 0.42 1.05 16 17 N -0.80 -40.77 12.48 21.83 0.27 -40.50 16 18 Si 1.10 41.75 29.99 68.60 2.06 43.81 16 19 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 20 H -0.25 -8.79 7.11 99.48 0.71 -8.08 16 21 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 22 C 0.19 4.84 6.95 138.13 0.96 5.80 16 23 N -0.32 -10.26 12.09 -50.46 -0.61 -10.87 16 24 N -0.11 -3.50 13.43 37.01 0.50 -3.00 16 25 N -0.10 -2.63 13.29 37.02 0.49 -2.14 16 26 N -0.29 -6.05 3.75 -359.65 -1.35 -7.40 16 27 C 0.05 0.42 11.12 127.77 1.42 1.85 16 28 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.08 2.22 6.59 -2.39 -0.02 2.20 16 30 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.42 14.07 8.28 -96.75 -0.80 13.26 16 32 H 0.13 4.21 7.33 -2.91 -0.02 4.19 16 33 H 0.13 3.68 8.06 -2.91 -0.02 3.66 16 34 H 0.12 3.90 8.06 -2.91 -0.02 3.87 16 35 H 0.09 4.39 6.83 -2.91 -0.02 4.37 16 36 H 0.29 15.18 6.78 -92.71 -0.63 14.56 16 37 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.13 0.48 8.14 -2.38 -0.02 0.46 16 39 H 0.13 0.46 7.26 -2.39 -0.02 0.44 16 Total: -1.00 -69.40 343.36 1.19 -68.21 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: 0.46 Total: 31.32 kcal Atomic # 6 Polarization: -63.46 SS G_CDS: 4.65 Total: -58.81 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -1.49 Total: -100.81 kcal Atomic # 8 Polarization: -86.43 SS G_CDS: -4.21 Total: -90.64 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.06 Total: 43.81 kcal Atomic # 16 Polarization: 107.19 SS G_CDS: -0.28 Total: 106.91 kcal Total: -69.40 1.19 -68.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364063806.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.552 kcal (2) G-P(sol) polarization free energy of solvation -69.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds