Wall clock time and date at job start Tue Mar 31 2020 19:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46756 * 2 1 4 4 N 1.46499 * 109.46941 * 119.99640 * 2 1 3 5 5 N 1.28944 * 126.47493 * 299.97888 * 4 2 1 6 6 N 1.28572 * 109.63140 * 180.02562 * 5 4 2 7 7 C 1.33384 * 109.89255 * 359.97438 * 6 5 4 8 8 N 1.39631 * 126.25741 * 180.02562 * 7 6 5 9 9 S 1.65594 * 120.00125 * 344.26328 * 8 7 6 10 10 O 1.42103 * 106.40350 * 177.59973 * 9 8 7 11 11 O 1.42105 * 106.40157 * 310.52068 * 9 8 7 12 12 C 1.76199 * 107.21991 * 64.05896 * 9 8 7 13 13 C 1.37641 * 120.13210 * 244.05066 * 12 9 8 14 14 C 1.38605 * 120.25128 * 180.02562 * 13 12 9 15 15 C 1.38655 * 120.50221 * 359.96940 * 14 13 12 16 16 C 1.37603 * 120.24810 * 0.03082 * 15 14 13 17 17 C 1.40700 * 120.12558 * 63.77229 * 12 9 8 18 18 C 1.41399 * 120.24432 * 359.97438 * 17 12 9 19 19 H 1.07991 * 119.99749 * 331.60670 * 18 17 12 20 20 C 1.39943 * 119.99871 * 151.60449 * 18 17 12 21 21 N 1.30822 * 120.00244 * 346.98735 * 20 18 17 22 22 Si 1.86803 * 119.99724 * 166.98339 * 20 18 17 23 23 H 1.48503 * 109.47071 * 94.97544 * 22 20 18 24 24 H 1.48505 * 109.46651 * 214.96991 * 22 20 18 25 25 H 1.48493 * 109.47176 * 334.97044 * 22 20 18 26 26 N 1.31682 * 107.48610 * 0.02562 * 7 6 5 27 27 H 1.09000 * 109.47362 * 299.99736 * 1 2 3 28 28 H 1.08992 * 109.47032 * 60.00271 * 1 2 3 29 29 H 1.08998 * 109.46705 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47071 * 239.99740 * 2 1 3 31 31 H 1.08996 * 109.47492 * 300.00011 * 3 2 1 32 32 H 1.09000 * 109.46969 * 60.00023 * 3 2 1 33 33 H 1.08998 * 109.46817 * 179.97438 * 3 2 1 34 34 H 0.97003 * 119.99814 * 164.25882 * 8 7 6 35 35 H 1.08007 * 119.87160 * 359.97438 * 13 12 9 36 36 H 1.07998 * 119.75112 * 179.97438 * 14 13 12 37 37 H 1.07999 * 119.87842 * 179.97438 * 15 14 13 38 38 H 1.08001 * 120.12487 * 179.97438 * 16 15 14 39 39 H 0.97003 * 120.00164 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 7 1.7854 -0.3603 2.4207 6 7 2.3715 -1.1885 3.2104 7 6 3.0225 -2.1104 2.4994 8 7 3.7721 -3.1711 3.0119 9 16 4.2423 -3.1617 4.5996 10 8 4.9291 -4.3857 4.8220 11 8 4.8265 -1.8883 4.8376 12 6 2.7782 -3.2279 5.5777 13 6 2.4491 -2.1753 6.4011 14 6 1.2983 -2.2250 7.1720 15 6 0.4657 -3.3327 7.1229 16 6 0.7748 -4.3966 6.3069 17 6 1.9378 -4.3547 5.5155 18 6 2.2623 -5.4393 4.6684 19 1 2.8356 -5.2693 3.7691 20 6 1.8406 -6.7330 4.9954 21 7 1.3748 -6.9865 6.1913 22 14 1.9426 -8.0979 3.7240 23 1 3.2118 -8.8477 3.9036 24 1 0.7930 -9.0220 3.8967 25 1 1.9040 -7.5090 2.3614 26 7 2.8290 -1.8373 1.2259 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6767 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 4.0173 -3.9136 2.4378 35 1 3.0906 -1.3076 6.4474 36 1 1.0480 -1.3946 7.8156 37 1 -0.4283 -3.3609 7.7282 38 1 0.1251 -5.2586 6.2706 39 1 1.0828 -7.8833 6.4180 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364953755.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:51 Heat of formation + Delta-G solvation = 75.384946 kcal Electronic energy + Delta-G solvation = -27555.210940 eV Core-core repulsion = 23628.094097 eV Total energy + Delta-G solvation = -3927.116843 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.88749 -37.55696 -36.87911 -36.34696 -35.06941 -34.98505 -33.87653 -32.12851 -30.56334 -30.20534 -29.49205 -27.69400 -25.54682 -24.85264 -22.73119 -21.73953 -21.17400 -21.10103 -18.76249 -17.74461 -17.71792 -17.21600 -16.80081 -16.47079 -15.92975 -15.40164 -14.79907 -14.52462 -14.30684 -13.80501 -13.69480 -13.32184 -13.16779 -12.95045 -12.73363 -12.68205 -12.24044 -12.12657 -11.90585 -11.73900 -11.62251 -11.50010 -11.30703 -11.28220 -11.21151 -11.15149 -11.13588 -10.76717 -10.53930 -10.43570 -10.28510 -9.86127 -9.42726 -9.42336 -8.93908 -7.97973 -7.54585 -7.04071 -4.76577 1.08322 1.22095 1.88853 2.37364 2.61597 2.78271 2.95444 2.99138 3.14379 3.24907 3.75700 4.06422 4.40325 4.44571 4.49727 4.59862 4.62178 4.79190 5.13262 5.15269 5.27030 5.34596 5.42214 5.50176 5.68136 5.77820 5.85881 6.11009 6.17083 6.31541 6.39611 6.47412 6.75692 6.90394 7.04077 7.13964 7.33391 7.55260 7.67951 7.87252 7.89939 8.29430 8.48434 8.49486 8.67498 9.89085 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011741 B = 0.004729 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.329133 B = 5919.708401 C = 6371.811364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.163 3.837 3 C -0.166 4.166 4 N -0.204 5.204 5 N 0.020 4.980 6 N -0.303 5.303 7 C 0.455 3.545 8 N -0.999 5.999 9 S 2.686 3.314 10 O -0.943 6.943 11 O -0.971 6.971 12 C -0.754 4.754 13 C 0.020 3.980 14 C -0.246 4.246 15 C -0.071 4.071 16 C -0.160 4.160 17 C 0.188 3.812 18 C -0.453 4.453 19 H 0.080 0.920 20 C 0.083 3.917 21 N -0.772 5.772 22 Si 0.912 3.088 23 H -0.262 1.262 24 H -0.272 1.272 25 H -0.257 1.257 26 N -0.332 5.332 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.119 0.881 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.435 0.565 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.123 0.877 39 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.798 8.583 -12.160 15.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.062 3.938 3 C -0.225 4.225 4 N -0.119 5.119 5 N 0.025 4.975 6 N -0.183 5.183 7 C 0.081 3.919 8 N -0.750 5.750 9 S 2.786 3.214 10 O -0.933 6.933 11 O -0.961 6.961 12 C -0.852 4.852 13 C 0.000 4.000 14 C -0.266 4.266 15 C -0.090 4.090 16 C -0.180 4.180 17 C 0.184 3.816 18 C -0.482 4.482 19 H 0.098 0.902 20 C -0.139 4.139 21 N -0.395 5.395 22 Si 0.735 3.265 23 H -0.186 1.186 24 H -0.196 1.196 25 H -0.180 1.180 26 N -0.182 5.182 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.137 0.863 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.272 0.728 35 H 0.128 0.872 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.141 0.859 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.282 8.995 -11.708 14.940 hybrid contribution -0.370 -1.603 -0.673 1.778 sum -2.652 7.392 -12.381 14.661 Atomic orbital electron populations 1.22246 0.91910 1.03992 1.04359 1.21681 0.95792 0.93276 0.83049 1.22243 1.02521 0.93306 1.04389 1.53446 1.33702 1.18160 1.06570 1.78291 1.13138 1.17410 0.88649 1.75520 1.13186 1.04400 1.25226 1.21018 0.92846 0.90619 0.87458 1.53630 1.63688 1.25464 1.32249 1.01879 0.75243 0.72968 0.71302 1.93597 1.72532 1.45045 1.82172 1.93492 1.76525 1.42917 1.83182 1.29450 1.24426 1.07398 1.23928 1.20161 0.94489 0.94157 0.91201 1.20469 0.99046 0.99663 1.07451 1.20905 0.97344 0.93956 0.96833 1.21407 0.98191 0.98139 1.00299 1.16989 0.88135 0.88314 0.88208 1.19755 1.29162 0.91774 1.07466 0.90185 1.25897 0.91881 1.00360 0.95719 1.69783 1.28030 1.23307 1.18414 0.86212 0.79279 0.79799 0.81228 1.18624 1.19627 1.18016 1.78820 1.18323 1.04024 1.17037 0.90485 0.89472 0.91317 0.86330 0.89454 0.90489 0.91416 0.72815 0.87210 0.88615 0.88828 0.85906 0.90091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 9.41 37.16 0.35 -0.90 16 2 C 0.16 1.48 3.97 -67.93 -0.27 1.21 16 3 C -0.17 -1.18 9.41 37.16 0.35 -0.83 16 4 N -0.20 -3.00 4.06 -4.89 -0.02 -3.02 16 5 N 0.02 0.35 12.99 60.35 0.78 1.13 16 6 N -0.30 -6.23 11.45 30.02 0.34 -5.89 16 7 C 0.45 8.96 8.76 -320.88 -2.81 6.15 16 8 N -1.00 -19.57 4.94 30.04 0.15 -19.42 16 9 S 2.69 61.24 4.70 -107.50 -0.51 60.73 16 10 O -0.94 -23.21 16.68 -57.17 -0.95 -24.16 16 11 O -0.97 -23.05 16.61 -57.17 -0.95 -24.00 16 12 C -0.75 -18.56 5.46 -38.87 -0.21 -18.77 16 13 C 0.02 0.47 9.53 -39.66 -0.38 0.09 16 14 C -0.25 -5.51 10.05 -39.29 -0.39 -5.91 16 15 C -0.07 -1.63 10.02 -39.66 -0.40 -2.03 16 16 C -0.16 -4.02 8.67 -38.87 -0.34 -4.36 16 17 C 0.19 4.87 5.55 -106.82 -0.59 4.28 16 18 C -0.45 -11.44 7.68 -37.74 -0.29 -11.73 16 19 H 0.08 1.88 5.69 -52.49 -0.30 1.58 16 20 C 0.08 2.00 5.21 -17.34 -0.09 1.91 16 21 N -0.77 -18.94 10.92 55.55 0.61 -18.33 16 22 Si 0.91 17.90 29.58 -169.99 -5.03 12.87 16 23 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 24 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 25 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 26 N -0.33 -5.73 12.79 30.03 0.38 -5.34 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.43 7.18 8.68 -34.47 -0.30 6.88 16 35 H 0.11 2.44 7.33 -52.48 -0.38 2.06 16 36 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 38 H 0.12 3.09 6.26 -52.49 -0.33 2.76 16 39 H 0.29 6.32 8.30 -40.82 -0.34 5.98 16 LS Contribution 349.12 15.07 5.26 5.26 Total: -1.00 -32.54 349.12 -9.25 -41.80 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -4.25 Total: 9.25 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: -5.07 Total: -30.89 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: 2.25 Total: -50.86 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: -1.90 Total: -48.16 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 16 Polarization: 61.24 SS G_CDS: -0.51 Total: 60.73 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.54 -9.25 -41.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364953755.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.180 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds