Wall clock time and date at job start Tue Mar 31 2020 19:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46756 * 2 1 4 4 N 1.46499 * 109.46941 * 119.99640 * 2 1 3 5 5 N 1.28944 * 126.47493 * 299.97888 * 4 2 1 6 6 N 1.28572 * 109.63140 * 180.02562 * 5 4 2 7 7 C 1.33384 * 109.89255 * 359.97438 * 6 5 4 8 8 N 1.39631 * 126.25741 * 180.02562 * 7 6 5 9 9 S 1.65594 * 120.00125 * 344.26328 * 8 7 6 10 10 O 1.42103 * 106.40350 * 177.59973 * 9 8 7 11 11 O 1.42105 * 106.40157 * 310.52068 * 9 8 7 12 12 C 1.76199 * 107.21991 * 64.05896 * 9 8 7 13 13 C 1.37641 * 120.13210 * 244.05066 * 12 9 8 14 14 C 1.38605 * 120.25128 * 180.02562 * 13 12 9 15 15 C 1.38655 * 120.50221 * 359.96940 * 14 13 12 16 16 C 1.37603 * 120.24810 * 0.03082 * 15 14 13 17 17 C 1.40700 * 120.12558 * 63.77229 * 12 9 8 18 18 C 1.41399 * 120.24432 * 359.97438 * 17 12 9 19 19 H 1.07991 * 119.99749 * 331.60670 * 18 17 12 20 20 C 1.39943 * 119.99871 * 151.60449 * 18 17 12 21 21 N 1.30822 * 120.00244 * 346.98735 * 20 18 17 22 22 Si 1.86803 * 119.99724 * 166.98339 * 20 18 17 23 23 H 1.48503 * 109.47071 * 94.97544 * 22 20 18 24 24 H 1.48505 * 109.46651 * 214.96991 * 22 20 18 25 25 H 1.48493 * 109.47176 * 334.97044 * 22 20 18 26 26 N 1.31682 * 107.48610 * 0.02562 * 7 6 5 27 27 H 1.09000 * 109.47362 * 299.99736 * 1 2 3 28 28 H 1.08992 * 109.47032 * 60.00271 * 1 2 3 29 29 H 1.08998 * 109.46705 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47071 * 239.99740 * 2 1 3 31 31 H 1.08996 * 109.47492 * 300.00011 * 3 2 1 32 32 H 1.09000 * 109.46969 * 60.00023 * 3 2 1 33 33 H 1.08998 * 109.46817 * 179.97438 * 3 2 1 34 34 H 0.97003 * 119.99814 * 164.25882 * 8 7 6 35 35 H 1.08007 * 119.87160 * 359.97438 * 13 12 9 36 36 H 1.07998 * 119.75112 * 179.97438 * 14 13 12 37 37 H 1.07999 * 119.87842 * 179.97438 * 15 14 13 38 38 H 1.08001 * 120.12487 * 179.97438 * 16 15 14 39 39 H 0.97003 * 120.00164 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 7 1.7854 -0.3603 2.4207 6 7 2.3715 -1.1885 3.2104 7 6 3.0225 -2.1104 2.4994 8 7 3.7721 -3.1711 3.0119 9 16 4.2423 -3.1617 4.5996 10 8 4.9291 -4.3857 4.8220 11 8 4.8265 -1.8883 4.8376 12 6 2.7782 -3.2279 5.5777 13 6 2.4491 -2.1753 6.4011 14 6 1.2983 -2.2250 7.1720 15 6 0.4657 -3.3327 7.1229 16 6 0.7748 -4.3966 6.3069 17 6 1.9378 -4.3547 5.5155 18 6 2.2623 -5.4393 4.6684 19 1 2.8356 -5.2693 3.7691 20 6 1.8406 -6.7330 4.9954 21 7 1.3748 -6.9865 6.1913 22 14 1.9426 -8.0979 3.7240 23 1 3.2118 -8.8477 3.9036 24 1 0.7930 -9.0220 3.8967 25 1 1.9040 -7.5090 2.3614 26 7 2.8290 -1.8373 1.2259 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6767 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 4.0173 -3.9136 2.4378 35 1 3.0906 -1.3076 6.4474 36 1 1.0480 -1.3946 7.8156 37 1 -0.4283 -3.3609 7.7282 38 1 0.1251 -5.2586 6.2706 39 1 1.0828 -7.8833 6.4180 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364953755.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:50 Heat of formation + Delta-G solvation = 54.134742 kcal Electronic energy + Delta-G solvation = -27556.132418 eV Core-core repulsion = 23628.094097 eV Total energy + Delta-G solvation = -3928.038321 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.24193 -39.37348 -38.30947 -37.86897 -36.92472 -36.32344 -35.66712 -33.43586 -32.05904 -31.82579 -31.31508 -28.27783 -27.37428 -26.02900 -24.16694 -23.49691 -22.93229 -22.35001 -20.36124 -19.54683 -19.21210 -18.71928 -18.13287 -17.83532 -17.62552 -17.13154 -16.36076 -16.02821 -15.49853 -15.18695 -15.10821 -14.95345 -14.62687 -14.46352 -13.85685 -13.71717 -13.51244 -13.34565 -13.29854 -13.27335 -13.12707 -13.08316 -13.04803 -12.90637 -12.81836 -12.56225 -12.46697 -12.14433 -12.10755 -11.83039 -11.64567 -11.58734 -11.17980 -11.12746 -10.46045 -9.81432 -9.40489 -8.81076 -6.63566 -0.63885 -0.10327 0.54223 0.73209 1.02240 1.13507 1.35381 1.47600 1.52409 1.72009 2.14251 2.61539 2.75575 2.95351 3.04236 3.45055 3.64604 3.77507 3.84323 3.98156 4.30221 4.37926 4.50931 4.52403 4.64290 4.65906 4.74711 4.76843 4.83049 4.96042 5.14482 5.20259 5.21497 5.28681 5.33942 5.50664 5.56111 5.73704 5.83396 6.03509 6.06366 6.45976 6.64646 6.83560 7.11699 8.15487 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011741 B = 0.004729 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.329133 B = 5919.708401 C = 6371.811364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 C -0.161 4.161 4 N -0.178 5.178 5 N 0.015 4.985 6 N -0.345 5.345 7 C 0.435 3.565 8 N -0.994 5.994 9 S 2.712 3.288 10 O -0.967 6.967 11 O -0.984 6.984 12 C -0.771 4.771 13 C 0.007 3.993 14 C -0.247 4.247 15 C -0.070 4.070 16 C -0.187 4.187 17 C 0.164 3.836 18 C -0.483 4.483 19 H 0.087 0.913 20 C 0.042 3.958 21 N -0.802 5.802 22 Si 0.973 3.027 23 H -0.261 1.261 24 H -0.257 1.257 25 H -0.249 1.249 26 N -0.328 5.328 27 H 0.065 0.935 28 H 0.128 0.872 29 H 0.054 0.946 30 H 0.142 0.858 31 H 0.127 0.873 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.446 0.554 35 H 0.118 0.882 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.660 9.385 -14.234 17.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 C -0.219 4.219 4 N -0.096 5.096 5 N 0.021 4.979 6 N -0.224 5.224 7 C 0.061 3.939 8 N -0.748 5.748 9 S 2.811 3.189 10 O -0.957 6.957 11 O -0.974 6.974 12 C -0.868 4.868 13 C -0.013 4.013 14 C -0.267 4.267 15 C -0.089 4.089 16 C -0.207 4.207 17 C 0.160 3.840 18 C -0.512 4.512 19 H 0.105 0.895 20 C -0.176 4.176 21 N -0.425 5.425 22 Si 0.792 3.208 23 H -0.186 1.186 24 H -0.181 1.181 25 H -0.172 1.172 26 N -0.179 5.179 27 H 0.084 0.916 28 H 0.146 0.854 29 H 0.073 0.927 30 H 0.160 0.840 31 H 0.146 0.854 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.286 0.714 35 H 0.136 0.864 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.132 0.868 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.168 9.819 -13.771 17.207 hybrid contribution -0.167 -1.663 -0.149 1.678 sum -3.335 8.156 -13.920 16.474 Atomic orbital electron populations 1.22282 0.90304 1.03564 1.05850 1.22495 0.97083 0.94303 0.81642 1.22280 1.01912 0.91830 1.05882 1.54123 1.31358 1.16774 1.07360 1.78200 1.13199 1.17085 0.89422 1.75466 1.14651 1.05478 1.26800 1.21078 0.93726 0.90915 0.88177 1.53060 1.64006 1.26292 1.31468 1.00949 0.74420 0.72095 0.71477 1.93556 1.73108 1.46004 1.83064 1.93464 1.76731 1.43356 1.83848 1.29684 1.24747 1.07502 1.24852 1.20418 0.95264 0.94248 0.91337 1.20850 0.98351 1.00374 1.07156 1.21245 0.98248 0.93208 0.96167 1.21480 0.98471 0.98901 1.01866 1.17302 0.88751 0.89070 0.88918 1.20077 1.30443 0.92610 1.08034 0.89524 1.26762 0.91168 1.02213 0.97504 1.69814 1.28471 1.24416 1.19821 0.85314 0.79602 0.76937 0.78947 1.18562 1.18071 1.17166 1.78753 1.18434 1.04846 1.15830 0.91554 0.85393 0.92670 0.84005 0.85427 0.91492 0.92363 0.71424 0.86443 0.85499 0.85856 0.86805 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.41 71.98 0.68 -1.30 16 2 C 0.14 2.22 3.97 44.99 0.18 2.40 16 3 C -0.16 -1.83 9.41 71.98 0.68 -1.15 16 4 N -0.18 -5.03 4.06 -169.39 -0.69 -5.72 16 5 N 0.02 0.53 12.99 37.02 0.48 1.01 16 6 N -0.35 -14.28 11.45 -58.92 -0.67 -14.95 16 7 C 0.44 17.19 8.76 260.81 2.28 19.48 16 8 N -0.99 -39.37 4.94 -58.88 -0.29 -39.66 16 9 S 2.71 125.90 4.70 -56.49 -0.27 125.64 16 10 O -0.97 -48.58 16.68 -128.00 -2.13 -50.72 16 11 O -0.98 -47.36 16.61 -128.00 -2.13 -49.49 16 12 C -0.77 -38.68 5.46 22.73 0.12 -38.56 16 13 C 0.01 0.35 9.53 22.22 0.21 0.56 16 14 C -0.25 -10.89 10.05 22.46 0.23 -10.66 16 15 C -0.07 -3.17 10.02 22.22 0.22 -2.94 16 16 C -0.19 -9.56 8.67 22.73 0.20 -9.37 16 17 C 0.16 8.69 5.55 -21.29 -0.12 8.57 16 18 C -0.48 -24.91 7.68 23.46 0.18 -24.73 16 19 H 0.09 4.16 5.69 -2.92 -0.02 4.14 16 20 C 0.04 2.05 5.21 85.26 0.44 2.50 16 21 N -0.80 -39.94 10.92 21.83 0.24 -39.70 16 22 Si 0.97 36.37 29.58 68.60 2.03 38.40 16 23 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 24 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 25 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 26 N -0.33 -11.05 12.79 -58.91 -0.75 -11.80 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.45 14.89 8.68 -96.74 -0.84 14.05 16 35 H 0.12 5.26 7.33 -2.91 -0.02 5.24 16 36 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 37 H 0.12 4.71 8.06 -2.91 -0.02 4.68 16 38 H 0.11 5.90 6.26 -2.91 -0.02 5.88 16 39 H 0.30 13.16 8.30 -92.71 -0.77 12.39 16 Total: -1.00 -71.79 349.12 1.39 -70.40 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.27 Total: 31.81 kcal Atomic # 6 Polarization: -60.52 SS G_CDS: 5.31 Total: -55.21 kcal Atomic # 7 Polarization: -109.14 SS G_CDS: -1.69 Total: -110.83 kcal Atomic # 8 Polarization: -95.94 SS G_CDS: -4.26 Total: -100.21 kcal Atomic # 14 Polarization: 36.37 SS G_CDS: 2.03 Total: 38.40 kcal Atomic # 16 Polarization: 125.90 SS G_CDS: -0.27 Total: 125.64 kcal Total: -71.79 1.39 -70.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364953755.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.531 kcal (2) G-P(sol) polarization free energy of solvation -71.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds