Wall clock time and date at job start Tue Mar 31 2020 20:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46953 * 2 1 4 4 N 1.46496 * 109.46986 * 119.99109 * 2 1 3 5 5 S 1.65600 * 120.00572 * 265.00182 * 4 2 1 6 6 O 1.42097 * 106.40227 * 311.46495 * 5 4 2 7 7 O 1.42098 * 106.40314 * 178.53832 * 5 4 2 8 8 C 1.76200 * 107.21533 * 65.00321 * 5 4 2 9 9 C 1.38657 * 119.87534 * 269.97735 * 8 5 4 10 10 C 1.38611 * 120.50450 * 180.02562 * 9 8 5 11 11 C 1.37644 * 120.24502 * 0.02562 * 10 9 8 12 12 C 1.40691 * 119.74527 * 359.97438 * 11 10 9 13 13 C 1.41396 * 120.24245 * 180.02562 * 12 11 10 14 14 H 1.08009 * 119.99598 * 150.21707 * 13 12 11 15 15 C 1.39943 * 120.00268 * 330.22360 * 13 12 11 16 16 N 1.30825 * 119.99976 * 161.72740 * 15 13 12 17 17 Si 1.86793 * 119.99780 * 341.72399 * 15 13 12 18 18 H 1.48503 * 109.47344 * 95.41200 * 17 15 13 19 19 H 1.48503 * 109.46947 * 215.41231 * 17 15 13 20 20 H 1.48503 * 109.47306 * 335.41258 * 17 15 13 21 21 C 1.37596 * 119.87915 * 90.00065 * 8 5 4 22 22 C 1.50699 * 109.47307 * 239.99567 * 2 1 3 23 23 N 1.31067 * 126.65840 * 285.02330 * 22 2 1 24 24 N 1.28846 * 107.98659 * 179.97438 * 23 22 2 25 25 N 1.28730 * 109.39841 * 359.97438 * 24 23 22 26 26 N 1.29022 * 108.81310 * 359.75170 * 25 24 23 27 27 C 1.46499 * 126.44426 * 180.24432 * 26 25 24 28 28 H 1.08996 * 109.46991 * 60.00674 * 1 2 3 29 29 H 1.09000 * 109.46804 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47237 * 300.00282 * 1 2 3 31 31 H 0.97008 * 119.99776 * 85.00734 * 4 2 1 32 32 H 1.08003 * 119.74856 * 0.02562 * 9 8 5 33 33 H 1.08002 * 119.87783 * 179.97438 * 10 9 8 34 34 H 1.07997 * 120.12108 * 180.02562 * 11 10 9 35 35 H 0.97000 * 119.99656 * 180.02562 * 16 15 13 36 36 H 1.08001 * 120.12593 * 0.25677 * 21 8 5 37 37 H 1.08999 * 109.46905 * 270.18126 * 27 26 25 38 38 H 1.09002 * 109.47044 * 30.17770 * 27 26 25 39 39 H 1.09000 * 109.47168 * 150.17464 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6904 1.1963 5 16 2.4121 0.1774 2.5505 6 8 3.2435 1.2446 2.1156 7 8 2.8123 -0.7694 3.5316 8 6 0.9274 0.9149 3.1474 9 6 0.5530 2.1730 2.7005 10 6 -0.6120 2.7657 3.1618 11 6 -1.4107 2.1096 4.0708 12 6 -1.0408 0.8326 4.5312 13 6 -1.8537 0.1490 5.4645 14 1 -1.8821 -0.9307 5.4670 15 6 -2.6216 0.8713 6.3849 16 7 -3.6241 0.2942 6.9960 17 14 -2.2151 2.6594 6.7408 18 1 -3.0625 3.5376 5.8948 19 1 -2.4761 2.9506 8.1734 20 1 -0.7834 2.9115 6.4372 21 6 0.1439 0.2405 4.0555 22 6 2.0324 -0.7105 -1.2304 23 7 2.0363 -2.0043 -1.4401 24 7 2.5435 -2.2169 -2.6053 25 7 2.8627 -1.0923 -3.1444 26 7 2.5580 -0.1391 -2.3299 27 6 2.7514 1.2951 -2.5574 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 2.1110 -1.6560 1.1950 32 1 1.1740 2.6952 1.9876 33 1 -0.8937 3.7462 2.8073 34 1 -2.3182 2.5730 4.4285 35 1 -4.1565 0.7950 7.6336 36 1 0.4397 -0.7374 4.4056 37 1 3.7367 1.5905 -2.1968 38 1 2.6763 1.5072 -3.6240 39 1 1.9852 1.8547 -2.0209 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364988230.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:12 Heat of formation + Delta-G solvation = 39.152135 kcal Electronic energy + Delta-G solvation = -27032.552472 eV Core-core repulsion = 23103.864456 eV Total energy + Delta-G solvation = -3928.688016 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.30845 -39.67323 -38.50605 -37.84880 -36.99533 -36.64944 -35.60393 -33.27946 -32.52374 -31.84397 -30.77026 -29.27285 -27.21052 -25.80322 -24.36944 -24.04671 -22.72415 -22.53068 -20.78955 -19.76875 -19.07139 -18.38933 -18.14373 -18.03628 -17.73419 -16.98540 -16.65369 -16.32058 -15.68231 -15.55767 -14.96571 -14.80098 -14.64807 -14.60399 -14.41861 -14.08521 -13.76968 -13.68856 -13.44137 -13.36553 -13.26340 -13.20203 -13.13929 -12.91125 -12.75019 -12.64614 -12.47035 -12.18973 -12.02493 -11.88678 -11.75239 -11.56151 -11.28164 -11.05039 -10.78234 -9.95398 -9.62783 -8.93415 -6.56151 -0.69776 0.11083 0.21152 0.70789 1.02224 1.05494 1.23217 1.39509 1.45877 1.94941 2.07198 2.43964 2.65540 2.71001 3.17662 3.33691 3.35820 3.65181 3.91519 4.05652 4.19717 4.24023 4.29234 4.31553 4.40408 4.50790 4.61635 4.74028 4.78368 4.83693 4.85878 4.92275 5.10341 5.14229 5.31908 5.37634 5.47858 5.67818 5.80900 5.82725 6.04642 6.29538 6.62736 6.72885 7.45150 8.15103 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020396 B = 0.003314 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.514038 B = 8447.442911 C = 8504.404566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.238 3.762 3 H 0.148 0.852 4 N -1.104 6.104 5 S 2.718 3.282 6 O -0.969 6.969 7 O -0.991 6.991 8 C -0.629 4.629 9 C -0.132 4.132 10 C -0.091 4.091 11 C -0.202 4.202 12 C 0.056 3.944 13 C -0.486 4.486 14 H 0.057 0.943 15 C 0.046 3.954 16 N -0.846 5.846 17 Si 0.958 3.042 18 H -0.246 1.246 19 H -0.280 1.280 20 H -0.251 1.251 21 C -0.119 4.119 22 C 0.183 3.817 23 N -0.317 5.317 24 N -0.109 5.109 25 N -0.099 5.099 26 N -0.288 5.288 27 C 0.050 3.950 28 H 0.099 0.901 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.429 0.571 32 H 0.157 0.843 33 H 0.148 0.852 34 H 0.106 0.894 35 H 0.295 0.705 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.130 0.870 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.064 9.661 -16.821 21.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.128 3.872 3 H 0.165 0.835 4 N -0.864 5.864 5 S 2.811 3.189 6 O -0.958 6.958 7 O -0.982 6.982 8 C -0.718 4.718 9 C -0.153 4.153 10 C -0.110 4.110 11 C -0.221 4.221 12 C 0.052 3.948 13 C -0.515 4.515 14 H 0.075 0.925 15 C -0.169 4.169 16 N -0.472 5.472 17 Si 0.780 3.220 18 H -0.170 1.170 19 H -0.206 1.206 20 H -0.175 1.175 21 C -0.140 4.140 22 C -0.097 4.097 23 N -0.168 5.168 24 N -0.103 5.103 25 N -0.086 5.086 26 N -0.091 5.091 27 C -0.089 4.089 28 H 0.118 0.882 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.266 0.734 32 H 0.175 0.825 33 H 0.166 0.834 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.126 0.874 37 H 0.137 0.863 38 H 0.149 0.851 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.958 8.704 -17.070 21.151 hybrid contribution -1.154 0.279 1.198 1.687 sum 7.804 8.983 -15.871 19.837 Atomic orbital electron populations 1.22456 0.91134 1.04502 1.05376 1.19401 0.95852 0.95531 0.76426 0.83481 1.55482 1.83868 1.20889 1.26209 1.00941 0.73619 0.72570 0.71814 1.93515 1.64569 1.55997 1.81758 1.93548 1.82037 1.63202 1.59378 1.30224 1.21980 1.07737 1.11901 1.20685 0.98146 0.93274 1.03185 1.21184 0.94184 0.99740 0.95858 1.21530 1.01301 0.97415 1.01891 1.17886 0.91321 0.92890 0.92655 1.19510 1.21652 0.95185 1.15191 0.92469 1.26846 0.91636 1.04464 0.93940 1.69721 1.13510 1.41448 1.22535 0.85600 0.81321 0.77423 0.77611 1.17023 1.20641 1.17474 1.20834 0.93940 1.00038 0.99158 1.26178 0.99827 0.90163 0.93579 1.74876 1.18291 1.13314 1.10272 1.78621 1.12990 1.16600 1.02064 1.78781 1.18634 0.92539 1.18612 1.48802 1.37908 1.11933 1.10420 1.23212 1.07791 0.69352 1.08530 0.88227 0.91734 0.89663 0.73418 0.82530 0.83389 0.87615 0.89480 0.87356 0.86250 0.85122 0.84212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.04 9.50 71.98 0.68 -2.35 16 2 C 0.24 4.21 3.20 44.25 0.14 4.35 16 3 H 0.15 1.60 6.56 -2.39 -0.02 1.59 16 4 N -1.10 -25.56 5.46 -172.52 -0.94 -26.51 16 5 S 2.72 80.34 5.71 -56.49 -0.32 80.02 16 6 O -0.97 -28.32 16.60 -128.00 -2.13 -30.45 16 7 O -0.99 -37.27 17.26 -128.00 -2.21 -39.48 16 8 C -0.63 -21.19 5.05 22.22 0.11 -21.08 16 9 C -0.13 -3.83 8.59 22.46 0.19 -3.64 16 10 C -0.09 -2.85 10.02 22.22 0.22 -2.62 16 11 C -0.20 -8.12 7.18 22.73 0.16 -7.96 16 12 C 0.06 2.60 5.10 -21.29 -0.11 2.49 16 13 C -0.49 -25.86 9.57 23.46 0.22 -25.63 16 14 H 0.06 3.32 8.06 -2.91 -0.02 3.30 16 15 C 0.05 2.35 5.40 85.26 0.46 2.81 16 16 N -0.85 -44.70 13.93 21.83 0.30 -44.40 16 17 Si 0.96 39.39 24.52 68.60 1.68 41.07 16 18 H -0.25 -9.10 6.71 99.48 0.67 -8.43 16 19 H -0.28 -11.07 7.11 99.48 0.71 -10.37 16 20 H -0.25 -10.49 6.86 99.48 0.68 -9.81 16 21 C -0.12 -5.01 9.26 22.73 0.21 -4.80 16 22 C 0.18 3.73 6.94 138.13 0.96 4.69 16 23 N -0.32 -8.65 12.14 -50.45 -0.61 -9.27 16 24 N -0.11 -3.13 13.43 37.01 0.50 -2.63 16 25 N -0.10 -2.30 13.29 37.02 0.49 -1.81 16 26 N -0.29 -4.73 3.75 -359.65 -1.35 -6.08 16 27 C 0.05 0.20 11.04 127.77 1.41 1.61 16 28 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.08 1.72 6.17 -2.39 -0.01 1.70 16 31 H 0.43 9.90 8.65 -96.74 -0.84 9.07 16 32 H 0.16 3.20 7.60 -2.91 -0.02 3.17 16 33 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 34 H 0.11 4.24 4.73 -2.91 -0.01 4.22 16 35 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 36 H 0.11 4.71 7.60 -2.91 -0.02 4.69 16 37 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.13 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.14 -0.27 7.41 -2.39 -0.02 -0.28 16 Total: -1.00 -73.98 343.36 0.31 -73.67 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.22 Total: 18.02 kcal Atomic # 6 Polarization: -56.82 SS G_CDS: 4.67 Total: -52.15 kcal Atomic # 7 Polarization: -89.09 SS G_CDS: -1.61 Total: -90.70 kcal Atomic # 8 Polarization: -65.60 SS G_CDS: -4.33 Total: -69.93 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 1.68 Total: 41.07 kcal Atomic # 16 Polarization: 80.34 SS G_CDS: -0.32 Total: 80.02 kcal Total: -73.98 0.31 -73.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364988230.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.820 kcal (2) G-P(sol) polarization free energy of solvation -73.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds