Wall clock time and date at job start Tue Mar 31 2020 20:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47105 * 2 1 4 4 N 1.46508 * 109.46795 * 240.00737 * 2 1 3 5 5 S 1.65598 * 119.99894 * 94.99910 * 4 2 1 6 6 O 1.42100 * 106.39857 * 178.53831 * 5 4 2 7 7 O 1.42101 * 106.40290 * 311.45580 * 5 4 2 8 8 C 1.76197 * 107.21687 * 65.00003 * 5 4 2 9 9 C 1.38659 * 119.87515 * 269.72114 * 8 5 4 10 10 C 1.38611 * 120.50113 * 179.72214 * 9 8 5 11 11 C 1.37644 * 120.24724 * 0.55889 * 10 9 8 12 12 C 1.40698 * 119.74503 * 359.72057 * 11 10 9 13 13 C 1.41396 * 120.24383 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99459 * 150.21842 * 13 12 11 15 15 C 1.39941 * 120.00349 * 330.22486 * 13 12 11 16 16 N 1.30815 * 120.00552 * 161.72350 * 15 13 12 17 17 Si 1.86802 * 119.99695 * 341.72432 * 15 13 12 18 18 H 1.48494 * 109.47289 * 95.41281 * 17 15 13 19 19 H 1.48502 * 109.46961 * 215.41131 * 17 15 13 20 20 H 1.48500 * 109.47139 * 335.41147 * 17 15 13 21 21 C 1.37597 * 119.87691 * 90.00281 * 8 5 4 22 22 C 1.50699 * 109.47198 * 120.00732 * 2 1 3 23 23 N 1.31071 * 126.65879 * 74.68367 * 22 2 1 24 24 N 1.28847 * 107.98705 * 179.89186 * 23 22 2 25 25 N 1.28741 * 109.39763 * 0.38097 * 24 23 22 26 26 N 1.29022 * 108.80573 * 359.76249 * 25 24 23 27 27 C 1.46493 * 126.43392 * 179.97438 * 26 25 24 28 28 H 1.09006 * 109.47179 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46619 * 299.99210 * 1 2 3 30 30 H 1.08997 * 109.47005 * 59.99422 * 1 2 3 31 31 H 0.97002 * 120.00005 * 274.99590 * 4 2 1 32 32 H 1.07997 * 119.74672 * 0.02562 * 9 8 5 33 33 H 1.07997 * 119.88031 * 180.25835 * 10 9 8 34 34 H 1.08002 * 120.12644 * 179.74698 * 11 10 9 35 35 H 0.96995 * 120.00755 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.12881 * 359.96816 * 21 8 5 37 37 H 1.09006 * 109.47493 * 270.02831 * 27 26 25 38 38 H 1.09006 * 109.46980 * 30.02551 * 27 26 25 39 39 H 1.09002 * 109.47221 * 150.02188 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 16 2.4121 0.1775 -2.5505 6 8 2.8775 -0.7631 -3.5086 7 8 1.3245 1.0595 -2.7921 8 6 3.7927 1.1912 -2.1371 9 6 3.5869 2.4675 -1.6358 10 6 4.6634 3.2738 -1.3009 11 6 5.9509 2.8187 -1.4739 12 6 6.1718 1.5275 -1.9873 13 6 7.4899 1.0491 -2.1688 14 1 7.6965 -0.0080 -2.0888 15 6 8.5268 1.9452 -2.4521 16 7 9.7710 1.5845 -2.2705 17 14 8.1340 3.6566 -3.0895 18 1 8.1057 4.6133 -1.9542 19 1 9.1757 4.0736 -4.0623 20 1 6.8085 3.6435 -3.7588 21 6 5.0710 0.7155 -2.3185 22 6 2.0324 -0.7106 1.2304 23 7 2.0314 -2.0040 1.4423 24 7 2.5431 -2.2170 2.6054 25 7 2.8632 -1.0925 3.1442 26 7 2.5638 -0.1397 2.3273 27 6 2.7641 1.2940 2.5519 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 2.1110 -1.6561 -1.1952 32 1 2.5801 2.8342 -1.5006 33 1 4.4916 4.2647 -0.9073 34 1 6.7883 3.4502 -1.2162 35 1 10.4897 2.2055 -2.4672 36 1 5.2291 -0.2774 -2.7129 37 1 1.8778 1.7147 3.0270 38 1 3.6286 1.4431 3.1988 39 1 2.9350 1.7910 1.5969 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364988236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:16 Heat of formation + Delta-G solvation = 63.777734 kcal Electronic energy + Delta-G solvation = -27375.831617 eV Core-core repulsion = 23448.211447 eV Total energy + Delta-G solvation = -3927.620169 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.30875 -38.10707 -37.29629 -36.68946 -35.75359 -35.57559 -33.93775 -32.23397 -30.90314 -30.34408 -29.91395 -28.58205 -25.57132 -24.90067 -23.41974 -22.57708 -21.70455 -21.06430 -19.51401 -18.32471 -17.88987 -17.37485 -17.13143 -16.74556 -16.46984 -15.50535 -15.13372 -14.95512 -14.70086 -14.15134 -14.01382 -13.94811 -13.63586 -13.33659 -13.01797 -12.97326 -12.70594 -12.40879 -12.31357 -12.07396 -11.89633 -11.85078 -11.81960 -11.66444 -11.62312 -11.20058 -11.18887 -11.00677 -10.93272 -10.55908 -10.28075 -10.19673 -10.00348 -9.73975 -9.37140 -8.46481 -8.05488 -7.22092 -4.78894 0.61819 1.08800 1.71666 1.81004 2.10886 2.24187 2.87714 3.01666 3.08913 3.17354 3.52642 3.73024 3.94819 4.02461 4.17203 4.29642 4.59796 4.62603 4.76471 4.86012 4.98630 5.04152 5.12432 5.23590 5.49266 5.56579 5.62130 5.71554 5.80870 5.92673 5.98540 6.04680 6.29170 6.39745 6.70056 6.83364 6.93016 7.02338 7.20571 7.46447 7.61175 8.04073 8.26549 8.46282 8.47752 9.79276 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012665 B = 0.004442 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.205872 B = 6301.758154 C = 7233.414283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.245 3.755 3 H 0.111 0.889 4 N -1.109 6.109 5 S 2.687 3.313 6 O -0.958 6.958 7 O -0.963 6.963 8 C -0.629 4.629 9 C -0.173 4.173 10 C -0.089 4.089 11 C -0.201 4.201 12 C 0.073 3.927 13 C -0.438 4.438 14 H 0.096 0.904 15 C 0.083 3.917 16 N -0.793 5.793 17 Si 0.908 3.092 18 H -0.268 1.268 19 H -0.285 1.285 20 H -0.243 1.243 21 C -0.099 4.099 22 C 0.179 3.821 23 N -0.291 5.291 24 N -0.075 5.075 25 N -0.092 5.092 26 N -0.299 5.299 27 C 0.070 3.930 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.426 0.574 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.290 0.710 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.523 3.710 6.984 15.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.133 3.867 3 H 0.129 0.871 4 N -0.867 5.867 5 S 2.781 3.219 6 O -0.948 6.948 7 O -0.953 6.953 8 C -0.720 4.720 9 C -0.194 4.194 10 C -0.109 4.109 11 C -0.220 4.220 12 C 0.069 3.931 13 C -0.466 4.466 14 H 0.114 0.886 15 C -0.138 4.138 16 N -0.416 5.416 17 Si 0.734 3.266 18 H -0.194 1.194 19 H -0.211 1.211 20 H -0.166 1.166 21 C -0.120 4.120 22 C -0.101 4.101 23 N -0.141 5.141 24 N -0.069 5.069 25 N -0.078 5.078 26 N -0.101 5.101 27 C -0.071 4.071 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.262 0.738 32 H 0.131 0.869 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.100 0.900 36 H 0.138 0.862 37 H 0.120 0.880 38 H 0.130 0.870 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.407 2.652 6.942 15.328 hybrid contribution 0.879 1.596 -0.101 1.825 sum -12.528 4.247 6.840 14.892 Atomic orbital electron populations 1.22364 0.91725 1.04479 1.04175 1.19016 0.95460 0.94310 0.77929 0.87149 1.55795 1.82201 1.20320 1.28403 1.01939 0.74337 0.73387 0.72192 1.93586 1.82143 1.62322 1.56786 1.93539 1.52544 1.66023 1.83197 1.29951 1.14430 1.09959 1.17649 1.20044 0.97954 0.93526 1.07915 1.20693 0.92957 0.97891 0.99326 1.21306 0.95942 0.98424 1.06365 1.17795 0.93422 0.91517 0.90391 1.19579 0.89669 0.97231 1.40122 0.88601 1.26198 0.94267 1.00887 0.92451 1.69667 1.00607 1.38203 1.33126 0.86342 0.80201 0.80590 0.79505 1.19367 1.21148 1.16562 1.20887 0.90419 1.00380 1.00270 1.26145 0.99977 0.90789 0.93144 1.74912 1.17686 1.11348 1.10178 1.78623 1.11363 1.15411 1.01482 1.78889 1.18630 0.92235 1.18022 1.48387 1.39444 1.10617 1.11607 1.22580 1.05794 0.72326 1.06431 0.90582 0.91217 0.88853 0.73836 0.86928 0.87795 0.87567 0.89965 0.86182 0.88047 0.86970 0.86974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 9.50 37.16 0.35 -1.11 16 2 C 0.24 2.64 3.16 -69.08 -0.22 2.42 16 3 H 0.11 1.00 5.96 -51.93 -0.31 0.70 16 4 N -1.11 -14.16 5.46 -5.88 -0.03 -14.20 16 5 S 2.69 43.23 5.65 -107.50 -0.61 42.63 16 6 O -0.96 -18.38 17.27 -57.17 -0.99 -19.36 16 7 O -0.96 -16.03 16.52 -57.17 -0.94 -16.98 16 8 C -0.63 -11.64 5.81 -39.66 -0.23 -11.87 16 9 C -0.17 -2.97 8.92 -39.29 -0.35 -3.33 16 10 C -0.09 -1.61 10.02 -39.66 -0.40 -2.01 16 11 C -0.20 -4.25 7.18 -38.87 -0.28 -4.53 16 12 C 0.07 1.69 5.11 -106.82 -0.55 1.15 16 13 C -0.44 -11.06 9.57 -37.74 -0.36 -11.42 16 14 H 0.10 2.55 8.06 -52.48 -0.42 2.12 16 15 C 0.08 2.03 5.40 -17.35 -0.09 1.93 16 16 N -0.79 -19.83 13.93 55.55 0.77 -19.06 16 17 Si 0.91 19.14 24.52 -169.99 -4.17 14.97 16 18 H -0.27 -5.34 6.71 56.52 0.38 -4.97 16 19 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.24 -5.28 6.86 56.52 0.39 -4.89 16 21 C -0.10 -2.12 9.26 -38.87 -0.36 -2.48 16 22 C 0.18 2.22 6.94 -155.44 -1.08 1.15 16 23 N -0.29 -4.33 12.15 32.70 0.40 -3.93 16 24 N -0.08 -1.19 13.43 60.35 0.81 -0.38 16 25 N -0.09 -1.30 13.29 60.35 0.80 -0.50 16 26 N -0.30 -3.41 3.75 -65.03 -0.24 -3.66 16 27 C 0.07 0.46 11.21 59.84 0.67 1.13 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.84 7.64 -51.93 -0.40 0.44 16 31 H 0.43 5.15 8.66 -34.47 -0.30 4.85 16 32 H 0.11 1.60 7.59 -52.49 -0.40 1.20 16 33 H 0.10 1.53 8.06 -52.49 -0.42 1.10 16 34 H 0.11 2.23 4.73 -52.49 -0.25 1.98 16 35 H 0.29 6.51 8.30 -40.82 -0.34 6.17 16 36 H 0.12 2.54 7.60 -52.49 -0.40 2.15 16 37 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.11 0.65 7.01 -51.93 -0.36 0.28 16 LS Contribution 344.88 15.07 5.20 5.20 Total: -1.00 -32.07 344.88 -6.01 -38.08 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -4.12 Total: 6.16 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: -2.89 Total: -28.97 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 2.51 Total: -41.72 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -1.93 Total: -36.34 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.17 Total: 14.97 kcal Atomic # 16 Polarization: 43.23 SS G_CDS: -0.61 Total: 42.63 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.07 -6.01 -38.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364988236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.859 kcal (2) G-P(sol) polarization free energy of solvation -32.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds